Wall clock time and date at job start Fri Apr 10 2020 18:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86805 * 119.99639 * 2 1 4 4 H 1.48497 * 109.46928 * 239.99706 * 3 2 1 5 5 H 1.48500 * 109.46770 * 120.00367 * 3 2 1 6 6 H 1.48492 * 109.47261 * 0.02562 * 3 2 1 7 7 C 1.38805 * 120.00040 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99665 * 155.02462 * 7 2 1 9 9 N 1.36939 * 120.00142 * 335.03066 * 7 2 1 10 10 C 1.46928 * 120.62907 * 152.50281 * 9 7 2 11 11 C 1.53191 * 108.77557 * 126.36988 * 10 9 7 12 12 C 1.53040 * 109.31682 * 54.62949 * 11 10 9 13 13 C 1.53041 * 109.53852 * 298.64077 * 12 11 10 14 14 H 1.09005 * 109.49589 * 301.37741 * 13 12 11 15 15 N 1.46500 * 109.49807 * 181.31276 * 13 12 11 16 16 C 1.34776 * 120.00004 * 154.99903 * 15 13 12 17 17 O 1.21286 * 119.99621 * 359.97438 * 16 15 13 18 18 C 1.50695 * 120.00050 * 180.02562 * 16 15 13 19 19 C 1.53238 * 109.62222 * 299.07185 * 18 16 15 20 20 C 1.50583 * 109.17388 * 184.67514 * 19 18 16 21 21 O 1.21223 * 119.36572 * 209.07645 * 20 19 18 22 22 N 1.34142 * 121.27648 * 29.08389 * 20 19 18 23 23 C 1.34141 * 122.59208 * 359.44675 * 22 20 19 24 24 O 1.21220 * 119.36369 * 180.54569 * 23 22 20 25 25 C 1.50590 * 121.27748 * 0.57433 * 23 22 20 26 26 C 1.46922 * 120.63030 * 332.21786 * 9 7 2 27 27 H 0.96999 * 119.99790 * 174.25738 * 1 2 3 28 28 H 1.09004 * 109.58191 * 246.14991 * 10 9 7 29 29 H 1.09000 * 109.58891 * 6.43350 * 10 9 7 30 30 H 1.08996 * 109.49842 * 174.58364 * 11 10 9 31 31 H 1.09001 * 109.49718 * 294.64906 * 11 10 9 32 32 H 1.09001 * 109.45737 * 58.65687 * 12 11 10 33 33 H 1.08995 * 109.46436 * 178.62877 * 12 11 10 34 34 H 0.96996 * 120.00167 * 334.99825 * 15 13 12 35 35 H 1.08998 * 109.62119 * 59.63146 * 18 16 15 36 36 H 1.09001 * 109.52606 * 304.57064 * 19 18 16 37 37 H 1.09011 * 109.51981 * 64.75995 * 19 18 16 38 38 H 0.97005 * 118.70972 * 179.48059 * 22 20 19 39 39 H 1.09000 * 109.52328 * 210.97695 * 25 23 22 40 40 H 1.09003 * 109.57545 * 90.81324 * 25 23 22 41 41 H 1.08997 * 109.58703 * 353.42553 * 26 9 7 42 42 H 1.09000 * 109.58443 * 113.84407 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 3.1040 1.6964 1.2125 6 1 1.2852 2.7465 0.0006 7 6 2.0103 -1.2021 0.0005 8 1 3.0146 -1.2459 -0.3944 9 7 1.4216 -2.3324 0.5017 10 6 1.8123 -3.6607 0.0100 11 6 2.2022 -4.5343 1.2065 12 6 1.0529 -4.5510 2.2170 13 6 0.7937 -3.1293 2.7209 14 1 1.7006 -2.7349 3.1794 15 7 -0.2855 -3.1508 3.7113 16 6 -0.3649 -2.1797 4.6426 17 8 0.4574 -1.2884 4.6609 18 6 -1.4748 -2.2021 5.6617 19 6 -2.8290 -2.1159 4.9498 20 6 -3.9240 -2.0232 5.9794 21 8 -5.0231 -2.4635 5.7195 22 7 -3.7067 -1.4627 7.1785 23 6 -2.5140 -0.9650 7.5381 24 8 -2.3804 -0.4800 8.6410 25 6 -1.3381 -0.9965 6.5979 26 6 0.3919 -2.2402 1.5455 27 1 -0.4850 -0.8358 -0.0841 28 1 0.9740 -4.1162 -0.5172 29 1 2.6611 -3.5647 -0.6671 30 1 2.4017 -5.5502 0.8656 31 1 3.0962 -4.1268 1.6785 32 1 0.1531 -4.9358 1.7371 33 1 1.3181 -5.1915 3.0581 34 1 -0.9430 -3.8638 3.6969 35 1 -1.4208 -3.1235 6.2414 36 1 -2.8509 -1.2306 4.3144 37 1 -2.9771 -3.0071 4.3397 38 1 -4.4408 -1.4157 7.8108 39 1 -0.4153 -1.0835 7.1715 40 1 -1.3162 -0.0791 6.0096 41 1 0.3053 -1.2075 1.8832 42 1 -0.5646 -2.5775 1.1461 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001008864574.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:00 Heat of formation + Delta-G solvation = -125.326755 kcal Electronic energy + Delta-G solvation = -26335.102857 eV Core-core repulsion = 22506.978307 eV Total energy + Delta-G solvation = -3828.124551 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.152 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.68925 -40.98927 -40.00572 -39.18474 -36.60379 -35.99350 -34.96534 -34.48368 -31.71514 -30.72534 -29.84517 -27.09018 -26.31595 -24.31266 -23.85833 -23.47804 -21.47964 -20.91048 -20.39047 -19.39369 -18.93620 -18.49225 -18.15879 -17.08596 -16.98034 -16.50169 -16.18975 -15.97997 -15.80037 -15.58384 -15.50209 -15.24855 -15.18282 -14.76678 -14.50975 -14.20476 -13.99279 -13.55702 -13.46395 -13.04468 -12.55957 -12.53266 -12.44802 -12.37407 -12.00286 -11.95531 -11.81105 -11.80977 -11.64646 -11.43851 -11.40225 -11.23662 -10.79648 -10.46303 -10.14940 -8.90429 -8.23598 -5.39485 0.34802 1.50696 1.54920 1.62118 1.63774 1.68666 1.80537 2.10284 2.64269 2.82664 3.20767 3.27538 3.38645 3.52756 3.66782 3.86038 3.91621 4.06484 4.09396 4.20354 4.33836 4.38843 4.48672 4.52003 4.71580 4.75021 4.81557 4.84952 4.96376 5.03013 5.13234 5.14505 5.18120 5.26069 5.44228 5.59355 5.69407 5.84594 6.21486 6.40675 6.56844 6.70357 7.07509 7.28547 7.78722 8.21214 9.00241 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.014392 B = 0.004111 C = 0.003641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.011305 B = 6809.794557 C = 7688.886178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.068 4.068 3 Si 1.104 2.896 4 H -0.271 1.271 5 H -0.288 1.288 6 H -0.291 1.291 7 C -0.359 4.359 8 H 0.048 0.952 9 N -0.617 5.617 10 C 0.137 3.863 11 C -0.123 4.123 12 C -0.107 4.107 13 C 0.136 3.864 14 H 0.054 0.946 15 N -0.704 5.704 16 C 0.517 3.483 17 O -0.574 6.574 18 C -0.092 4.092 19 C -0.134 4.134 20 C 0.545 3.455 21 O -0.528 6.528 22 N -0.668 5.668 23 C 0.545 3.455 24 O -0.532 6.532 25 C -0.124 4.124 26 C 0.156 3.844 27 H 0.255 0.745 28 H 0.023 0.977 29 H 0.047 0.953 30 H 0.096 0.904 31 H 0.048 0.952 32 H 0.078 0.922 33 H 0.091 0.909 34 H 0.417 0.583 35 H 0.151 0.849 36 H 0.118 0.882 37 H 0.144 0.856 38 H 0.418 0.582 39 H 0.124 0.876 40 H 0.116 0.884 41 H 0.037 0.963 42 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.721 -11.575 12.148 17.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.266 4.266 3 Si 0.929 3.071 4 H -0.197 1.197 5 H -0.215 1.215 6 H -0.217 1.217 7 C -0.488 4.488 8 H 0.066 0.934 9 N -0.342 5.342 10 C 0.012 3.988 11 C -0.162 4.162 12 C -0.145 4.145 13 C 0.030 3.970 14 H 0.072 0.928 15 N -0.356 5.356 16 C 0.303 3.697 17 O -0.452 6.452 18 C -0.114 4.114 19 C -0.174 4.174 20 C 0.335 3.665 21 O -0.402 6.402 22 N -0.332 5.332 23 C 0.335 3.665 24 O -0.406 6.406 25 C -0.164 4.164 26 C 0.029 3.971 27 H 0.065 0.935 28 H 0.041 0.959 29 H 0.065 0.935 30 H 0.114 0.886 31 H 0.067 0.933 32 H 0.097 0.903 33 H 0.109 0.891 34 H 0.255 0.745 35 H 0.169 0.831 36 H 0.136 0.864 37 H 0.162 0.838 38 H 0.259 0.741 39 H 0.142 0.858 40 H 0.134 0.866 41 H 0.055 0.945 42 H 0.029 0.971 Dipole moment (debyes) X Y Z Total from point charges -4.604 -9.297 12.475 16.225 hybrid contribution -0.416 -1.404 -0.160 1.473 sum -5.020 -10.701 12.315 17.069 Atomic orbital electron populations 1.70898 1.07396 1.29354 1.50239 1.26961 0.96652 1.04405 0.98548 0.83004 0.74153 0.72826 0.77108 1.19700 1.21474 1.21668 1.20180 0.97362 0.90065 1.41231 0.93374 1.44285 1.46527 1.02284 1.41149 1.21158 0.97392 0.85058 0.95196 1.21888 0.97779 1.00348 0.96177 1.21648 0.99699 0.93623 0.99525 1.21270 0.89754 0.97708 0.88285 0.92795 1.45859 1.31087 1.28297 1.30402 1.20676 0.85984 0.81167 0.81880 1.90802 1.43574 1.36825 1.74006 1.21424 0.92125 1.02453 0.95376 1.22022 0.89335 1.09131 0.96898 1.20828 0.89567 0.74188 0.81875 1.90815 1.26290 1.45206 1.77883 1.44790 1.14786 1.55423 1.18242 1.20890 0.83960 0.74362 0.87282 1.90796 1.84050 1.42777 1.23001 1.21772 0.96597 1.00947 0.97069 1.20990 0.90032 0.98114 0.87985 0.93532 0.95892 0.93455 0.88570 0.93274 0.90303 0.89065 0.74499 0.83137 0.86401 0.83788 0.74146 0.85770 0.86598 0.94455 0.97131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.09 12.41 21.65 0.27 -56.83 16 2 C -0.07 -3.95 4.69 84.86 0.40 -3.56 16 3 Si 1.10 52.63 29.99 68.60 2.06 54.69 16 4 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 5 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 6 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 7 C -0.36 -20.28 9.49 84.03 0.80 -19.48 16 8 H 0.05 2.73 7.94 -2.91 -0.02 2.71 16 9 N -0.62 -30.26 2.86 -699.94 -2.00 -32.26 16 10 C 0.14 5.28 6.52 86.36 0.56 5.85 16 11 C -0.12 -3.49 6.08 30.67 0.19 -3.31 16 12 C -0.11 -2.63 5.36 30.62 0.16 -2.47 16 13 C 0.14 4.49 2.59 44.92 0.12 4.61 16 14 H 0.05 2.16 7.58 -2.38 -0.02 2.15 16 15 N -0.70 -16.46 5.00 -442.85 -2.21 -18.67 16 16 C 0.52 13.12 7.12 87.66 0.62 13.75 16 17 O -0.57 -21.43 15.61 -3.05 -0.05 -21.48 16 18 C -0.09 -1.37 2.66 -11.38 -0.03 -1.40 16 19 C -0.13 -1.87 5.24 29.89 0.16 -1.72 16 20 C 0.55 9.02 7.74 87.72 0.68 9.70 16 21 O -0.53 -12.23 17.87 -2.85 -0.05 -12.28 16 22 N -0.67 -10.26 5.09 -428.64 -2.18 -12.45 16 23 C 0.54 9.98 7.74 87.72 0.68 10.66 16 24 O -0.53 -13.49 17.87 -2.84 -0.05 -13.54 16 25 C -0.12 -2.20 4.70 29.90 0.14 -2.06 16 26 C 0.16 6.97 4.24 86.22 0.37 7.33 16 27 H 0.25 15.61 6.72 -92.71 -0.62 14.99 16 28 H 0.02 0.86 8.14 -2.38 -0.02 0.84 16 29 H 0.05 1.87 7.93 -2.39 -0.02 1.86 16 30 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.42 5.97 8.19 -92.71 -0.76 5.21 16 35 H 0.15 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.12 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.14 1.41 7.77 -2.38 -0.02 1.40 16 38 H 0.42 5.74 8.79 -92.70 -0.81 4.93 16 39 H 0.12 2.24 8.14 -2.39 -0.02 2.23 16 40 H 0.12 2.37 7.98 -2.39 -0.02 2.35 16 41 H 0.04 2.03 6.30 -2.39 -0.02 2.02 16 42 H 0.01 0.48 7.87 -2.39 -0.02 0.46 16 Total: -1.00 -81.26 344.39 0.26 -81.01 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: -0.36 Total: 13.90 kcal Atomic # 6 Polarization: 13.07 SS G_CDS: 4.84 Total: 17.91 kcal Atomic # 7 Polarization: -114.07 SS G_CDS: -6.13 Total: -120.20 kcal Atomic # 8 Polarization: -47.15 SS G_CDS: -0.15 Total: -47.30 kcal Atomic # 14 Polarization: 52.63 SS G_CDS: 2.06 Total: 54.69 kcal Total: -81.26 0.26 -81.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008864574.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.319 kcal (2) G-P(sol) polarization free energy of solvation -81.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds