Wall clock time and date at job start Fri Apr 10 2020 18:01:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86798 * 120.00501 * 2 1 4 4 H 1.48499 * 109.47331 * 239.99826 * 3 2 1 5 5 H 1.48500 * 109.46947 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47173 * 119.99513 * 3 2 1 7 7 C 1.38820 * 119.99827 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99901 * 163.07101 * 7 2 1 9 9 N 1.36937 * 119.99588 * 343.07737 * 7 2 1 10 10 C 1.46928 * 120.62706 * 151.85904 * 9 7 2 11 11 C 1.53193 * 108.76651 * 126.35770 * 10 9 7 12 12 C 1.53041 * 109.31156 * 54.65209 * 11 10 9 13 13 C 1.53037 * 109.53035 * 298.61690 * 12 11 10 14 14 H 1.09001 * 109.49940 * 301.42255 * 13 12 11 15 15 N 1.46501 * 109.50316 * 181.32241 * 13 12 11 16 16 C 1.34770 * 120.00421 * 154.99754 * 15 13 12 17 17 O 1.21286 * 119.99864 * 0.02562 * 16 15 13 18 18 C 1.50694 * 120.00267 * 180.02562 * 16 15 13 19 19 C 1.52997 * 109.47580 * 180.02562 * 18 16 15 20 20 H 1.09004 * 110.54115 * 56.38881 * 19 18 16 21 21 C 1.54230 * 110.61238 * 179.41092 * 19 18 16 22 22 C 1.51313 * 103.55424 * 118.51493 * 21 19 18 23 23 O 1.21226 * 125.39198 * 180.02562 * 22 21 19 24 24 N 1.33872 * 109.20707 * 0.02562 * 22 21 19 25 25 C 1.33875 * 114.47900 * 0.02562 * 24 22 21 26 26 O 1.21224 * 125.39690 * 180.02562 * 25 24 22 27 27 C 1.46925 * 120.63104 * 331.82887 * 9 7 2 28 28 H 0.97000 * 119.99811 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.58728 * 246.15313 * 10 9 7 30 30 H 1.09003 * 109.58835 * 6.43647 * 10 9 7 31 31 H 1.09001 * 109.50807 * 294.69653 * 11 10 9 32 32 H 1.08993 * 109.48854 * 174.60221 * 11 10 9 33 33 H 1.09002 * 109.46085 * 178.60433 * 12 11 10 34 34 H 1.09000 * 109.45785 * 58.62865 * 12 11 10 35 35 H 0.96998 * 119.99433 * 334.99937 * 15 13 12 36 36 H 1.09002 * 109.46862 * 300.00182 * 18 16 15 37 37 H 1.09000 * 109.47481 * 60.00018 * 18 16 15 38 38 H 1.08996 * 110.60324 * 237.04011 * 21 19 18 39 39 H 1.09004 * 110.59911 * 359.97438 * 21 19 18 40 40 H 0.97005 * 122.75756 * 179.97438 * 24 22 21 41 41 H 1.09001 * 109.57975 * 113.85178 * 27 9 7 42 42 H 1.08996 * 109.70720 * 353.49542 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0551 -1.2226 -0.2718 9 7 1.3699 -2.3622 0.3463 10 6 1.8141 -3.6530 -0.1972 11 6 2.0683 -4.6164 0.9664 12 6 0.8130 -4.7001 1.8378 13 6 0.4980 -3.3183 2.4152 14 1 1.3476 -2.9660 3.0000 15 7 -0.6854 -3.4054 3.2744 16 6 -0.8693 -2.5063 4.2613 17 8 -0.0553 -1.6247 4.4379 18 6 -2.0863 -2.5962 5.1455 19 6 -2.0532 -1.4654 6.1755 20 1 -1.9839 -0.4976 5.6788 21 6 -3.2965 -1.5240 7.0863 22 6 -2.7150 -1.7400 8.4665 23 8 -3.3563 -1.8453 9.4899 24 7 -1.3804 -1.7963 8.3783 25 6 -0.9000 -1.6528 7.1370 26 8 0.2730 -1.6719 6.8315 27 6 0.2261 -2.3398 1.2682 28 1 -0.4850 0.8401 -0.0004 29 1 1.0405 -4.0614 -0.8476 30 1 2.7334 -3.5132 -0.7660 31 1 2.9031 -4.2519 1.5651 32 1 2.3058 -5.6054 0.5745 33 1 0.9827 -5.4040 2.6526 34 1 -0.0271 -5.0408 1.2326 35 1 -1.3366 -4.1102 3.1329 36 1 -2.9856 -2.5060 4.5361 37 1 -2.0912 -3.5570 5.6603 38 1 -3.8472 -0.5844 7.0446 39 1 -3.9387 -2.3587 6.8053 40 1 -0.8085 -1.9294 9.1505 41 1 -0.6770 -2.6411 0.7373 42 1 0.0963 -1.3344 1.6685 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001009762542.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:14 Heat of formation + Delta-G solvation = -83.906138 kcal Electronic energy + Delta-G solvation = -26209.052725 eV Core-core repulsion = 22382.724307 eV Total energy + Delta-G solvation = -3826.328418 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.152 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.00110 -39.46051 -38.60222 -37.25956 -36.00371 -34.09663 -33.64732 -32.63580 -30.09289 -29.58653 -28.07661 -25.27212 -25.21408 -22.39830 -22.07143 -21.85098 -20.87482 -19.82231 -19.22890 -18.06380 -17.14429 -16.75132 -16.56304 -16.25363 -15.49180 -15.44153 -14.75283 -14.70883 -14.19667 -14.05099 -13.86087 -13.76650 -13.46744 -13.18709 -12.99665 -12.73258 -12.39548 -12.30726 -12.11990 -11.80283 -11.52167 -10.99560 -10.87148 -10.69918 -10.68060 -10.46134 -10.45764 -10.24268 -10.06382 -9.95577 -9.91416 -9.49253 -9.26731 -8.46230 -8.39897 -6.62621 -5.73720 -3.16842 1.34007 2.55896 2.58685 3.09079 3.42462 3.46627 3.49935 3.53802 3.86134 4.03154 4.17369 4.43685 4.56509 4.89401 5.05834 5.08663 5.30000 5.38348 5.38893 5.43809 5.57062 5.61540 5.65945 5.73753 5.79062 6.11647 6.16920 6.35947 6.44036 6.44889 6.54327 6.72877 6.80093 6.97536 7.00577 7.12115 7.33044 7.73384 7.74935 7.85110 7.97701 8.50668 8.72707 9.25709 9.89463 10.44400 11.34336 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.015912 B = 0.003877 C = 0.003391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.237082 B = 7220.102029 C = 8255.242705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.008 3.992 3 Si 0.902 3.098 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.256 4.256 8 H 0.065 0.935 9 N -0.589 5.589 10 C 0.143 3.857 11 C -0.131 4.131 12 C -0.115 4.115 13 C 0.118 3.882 14 H 0.081 0.919 15 N -0.723 5.723 16 C 0.497 3.503 17 O -0.503 6.503 18 C -0.127 4.127 19 C -0.109 4.109 20 H 0.135 0.865 21 C -0.155 4.155 22 C 0.532 3.468 23 O -0.494 6.494 24 N -0.686 5.686 25 C 0.521 3.479 26 O -0.434 6.434 27 C 0.169 3.831 28 H 0.253 0.747 29 H 0.018 0.982 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.054 0.946 33 H 0.049 0.951 34 H 0.058 0.942 35 H 0.390 0.610 36 H 0.112 0.888 37 H 0.093 0.907 38 H 0.124 0.876 39 H 0.123 0.877 40 H 0.412 0.588 41 H 0.015 0.985 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.496 -8.779 12.094 17.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.191 4.191 3 Si 0.732 3.268 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.386 4.386 8 H 0.083 0.917 9 N -0.311 5.311 10 C 0.016 3.984 11 C -0.171 4.171 12 C -0.153 4.153 13 C 0.012 3.988 14 H 0.100 0.900 15 N -0.375 5.375 16 C 0.281 3.719 17 O -0.377 6.377 18 C -0.168 4.168 19 C -0.131 4.131 20 H 0.153 0.847 21 C -0.195 4.195 22 C 0.320 3.680 23 O -0.367 6.367 24 N -0.352 5.352 25 C 0.306 3.694 26 O -0.300 6.300 27 C 0.042 3.958 28 H 0.063 0.937 29 H 0.035 0.965 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.223 0.777 36 H 0.130 0.870 37 H 0.111 0.889 38 H 0.142 0.858 39 H 0.141 0.859 40 H 0.252 0.748 41 H 0.034 0.966 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -7.759 -7.993 12.400 16.669 hybrid contribution 0.299 0.396 0.335 0.599 sum -7.461 -7.596 12.735 16.600 Atomic orbital electron populations 1.70005 1.05321 1.25558 1.53540 1.25012 0.95262 0.98410 1.00431 0.86380 0.79025 0.83324 0.78116 1.20922 1.21634 1.20857 1.19109 0.92552 0.84830 1.42089 0.91730 1.43954 1.36090 1.01718 1.49386 1.20953 0.97710 0.86892 0.92830 1.22002 0.97062 0.99268 0.98785 1.21667 0.98830 0.96194 0.98647 1.21944 0.87222 0.96696 0.92899 0.90040 1.46012 1.26308 1.31752 1.33390 1.20263 0.87468 0.82794 0.81374 1.90861 1.44364 1.33225 1.69207 1.21604 0.99678 0.98551 0.96935 1.21835 0.91888 1.03791 0.95601 0.84747 1.22605 0.98710 1.07240 0.90936 1.20780 0.81911 0.73530 0.91825 1.90805 1.64274 1.46663 1.34937 1.44908 1.10423 1.67259 1.12642 1.20741 0.90675 0.75183 0.82791 1.90940 1.17300 1.42473 1.79297 1.21067 0.88618 0.98846 0.87291 0.93682 0.96453 0.92668 0.92141 0.92709 0.93242 0.92341 0.77723 0.87016 0.88868 0.85771 0.85882 0.74847 0.96647 0.88796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.59 11.19 55.49 0.62 -25.97 16 2 C 0.01 0.22 4.92 -17.43 -0.09 0.14 16 3 Si 0.90 22.59 29.59 -169.99 -5.03 17.56 16 4 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 6 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 7 C -0.26 -7.24 9.58 -15.06 -0.14 -7.38 16 8 H 0.06 1.79 7.89 -52.49 -0.41 1.37 16 9 N -0.59 -14.98 2.99 -172.31 -0.52 -15.50 16 10 C 0.14 2.96 6.52 -3.71 -0.02 2.94 16 11 C -0.13 -2.24 6.08 -26.61 -0.16 -2.40 16 12 C -0.12 -1.84 5.35 -26.69 -0.14 -1.98 16 13 C 0.12 2.26 2.60 -67.81 -0.18 2.09 16 14 H 0.08 1.85 7.58 -51.93 -0.39 1.45 16 15 N -0.72 -10.94 5.08 -53.69 -0.27 -11.21 16 16 C 0.50 7.79 7.47 -10.99 -0.08 7.71 16 17 O -0.50 -10.61 13.23 -17.46 -0.23 -10.84 16 18 C -0.13 -1.17 5.04 -27.89 -0.14 -1.31 16 19 C -0.11 -1.02 2.72 -90.83 -0.25 -1.26 16 20 H 0.13 1.38 8.03 -51.93 -0.42 0.96 16 21 C -0.16 -0.93 6.67 -26.94 -0.18 -1.11 16 22 C 0.53 4.74 8.55 -11.09 -0.09 4.65 16 23 O -0.49 -5.94 18.02 5.60 0.10 -5.84 16 24 N -0.69 -6.34 5.48 -11.40 -0.06 -6.40 16 25 C 0.52 6.30 7.71 -11.09 -0.09 6.21 16 26 O -0.43 -7.50 15.42 -17.41 -0.27 -7.77 16 27 C 0.17 4.05 4.88 -3.71 -0.02 4.04 16 28 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 29 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.05 1.13 7.93 -51.93 -0.41 0.71 16 31 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.39 4.37 8.60 -40.82 -0.35 4.02 16 36 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.12 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.12 0.46 7.74 -51.93 -0.40 0.05 16 40 H 0.41 3.29 8.96 -40.82 -0.37 2.92 16 41 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.09 2.66 6.06 -51.93 -0.31 2.34 16 LS Contribution 344.80 15.07 5.20 5.20 Total: -1.00 -37.48 344.80 -8.05 -45.53 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -6.01 Total: 2.93 kcal Atomic # 6 Polarization: 13.90 SS G_CDS: -1.58 Total: 12.32 kcal Atomic # 7 Polarization: -58.85 SS G_CDS: -0.23 Total: -59.08 kcal Atomic # 8 Polarization: -24.05 SS G_CDS: -0.40 Total: -24.45 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.03 Total: 17.56 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -37.48 -8.05 -45.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009762542.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.376 kcal (2) G-P(sol) polarization free energy of solvation -37.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds