Wall clock time and date at job start Fri Apr 10 2020 18:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86798 * 120.00501 * 2 1 4 4 H 1.48499 * 109.47331 * 239.99826 * 3 2 1 5 5 H 1.48500 * 109.46947 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47173 * 119.99513 * 3 2 1 7 7 C 1.38820 * 119.99827 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99901 * 163.07101 * 7 2 1 9 9 N 1.36937 * 119.99588 * 343.07737 * 7 2 1 10 10 C 1.46928 * 120.62706 * 151.85904 * 9 7 2 11 11 C 1.53193 * 108.76651 * 126.35770 * 10 9 7 12 12 C 1.53041 * 109.31156 * 54.65209 * 11 10 9 13 13 C 1.53037 * 109.53035 * 298.61690 * 12 11 10 14 14 H 1.09001 * 109.49940 * 301.42255 * 13 12 11 15 15 N 1.46501 * 109.50316 * 181.32241 * 13 12 11 16 16 C 1.34770 * 120.00421 * 154.99754 * 15 13 12 17 17 O 1.21286 * 119.99864 * 0.02562 * 16 15 13 18 18 C 1.50694 * 120.00267 * 180.02562 * 16 15 13 19 19 C 1.52997 * 109.47580 * 180.02562 * 18 16 15 20 20 H 1.09004 * 110.54115 * 56.38881 * 19 18 16 21 21 C 1.54230 * 110.61238 * 179.41092 * 19 18 16 22 22 C 1.51313 * 103.55424 * 118.51493 * 21 19 18 23 23 O 1.21226 * 125.39198 * 180.02562 * 22 21 19 24 24 N 1.33872 * 109.20707 * 0.02562 * 22 21 19 25 25 C 1.33875 * 114.47900 * 0.02562 * 24 22 21 26 26 O 1.21224 * 125.39690 * 180.02562 * 25 24 22 27 27 C 1.46925 * 120.63104 * 331.82887 * 9 7 2 28 28 H 0.97000 * 119.99811 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.58728 * 246.15313 * 10 9 7 30 30 H 1.09003 * 109.58835 * 6.43647 * 10 9 7 31 31 H 1.09001 * 109.50807 * 294.69653 * 11 10 9 32 32 H 1.08993 * 109.48854 * 174.60221 * 11 10 9 33 33 H 1.09002 * 109.46085 * 178.60433 * 12 11 10 34 34 H 1.09000 * 109.45785 * 58.62865 * 12 11 10 35 35 H 0.96998 * 119.99433 * 334.99937 * 15 13 12 36 36 H 1.09002 * 109.46862 * 300.00182 * 18 16 15 37 37 H 1.09000 * 109.47481 * 60.00018 * 18 16 15 38 38 H 1.08996 * 110.60324 * 237.04011 * 21 19 18 39 39 H 1.09004 * 110.59911 * 359.97438 * 21 19 18 40 40 H 0.97005 * 122.75756 * 179.97438 * 24 22 21 41 41 H 1.09001 * 109.57975 * 113.85178 * 27 9 7 42 42 H 1.08996 * 109.70720 * 353.49542 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0551 -1.2226 -0.2718 9 7 1.3699 -2.3622 0.3463 10 6 1.8141 -3.6530 -0.1972 11 6 2.0683 -4.6164 0.9664 12 6 0.8130 -4.7001 1.8378 13 6 0.4980 -3.3183 2.4152 14 1 1.3476 -2.9660 3.0000 15 7 -0.6854 -3.4054 3.2744 16 6 -0.8693 -2.5063 4.2613 17 8 -0.0553 -1.6247 4.4379 18 6 -2.0863 -2.5962 5.1455 19 6 -2.0532 -1.4654 6.1755 20 1 -1.9839 -0.4976 5.6788 21 6 -3.2965 -1.5240 7.0863 22 6 -2.7150 -1.7400 8.4665 23 8 -3.3563 -1.8453 9.4899 24 7 -1.3804 -1.7963 8.3783 25 6 -0.9000 -1.6528 7.1370 26 8 0.2730 -1.6719 6.8315 27 6 0.2261 -2.3398 1.2682 28 1 -0.4850 0.8401 -0.0004 29 1 1.0405 -4.0614 -0.8476 30 1 2.7334 -3.5132 -0.7660 31 1 2.9031 -4.2519 1.5651 32 1 2.3058 -5.6054 0.5745 33 1 0.9827 -5.4040 2.6526 34 1 -0.0271 -5.0408 1.2326 35 1 -1.3366 -4.1102 3.1329 36 1 -2.9856 -2.5060 4.5361 37 1 -2.0912 -3.5570 5.6603 38 1 -3.8472 -0.5844 7.0446 39 1 -3.9387 -2.3587 6.8053 40 1 -0.8085 -1.9294 9.1505 41 1 -0.6770 -2.6411 0.7373 42 1 0.0963 -1.3344 1.6685 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001009762542.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:13 Heat of formation + Delta-G solvation = -113.511680 kcal Electronic energy + Delta-G solvation = -26210.336517 eV Core-core repulsion = 22382.724307 eV Total energy + Delta-G solvation = -3827.612210 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.152 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.82687 -40.72757 -39.62026 -38.81475 -36.94252 -35.71529 -34.50500 -34.35653 -31.91301 -30.90035 -29.13055 -27.22263 -26.14125 -23.95504 -23.62363 -22.64533 -21.92433 -21.17600 -20.63618 -18.93765 -18.73089 -18.11042 -17.55707 -17.24716 -17.00892 -16.58982 -16.29653 -15.76423 -15.65905 -15.32811 -15.16951 -14.95707 -14.83967 -14.53739 -14.13756 -14.05008 -13.81245 -13.67893 -13.36099 -12.92817 -12.92182 -12.66327 -12.45045 -12.23091 -12.18205 -12.06038 -11.69662 -11.66217 -11.56690 -11.37554 -11.23228 -10.98770 -10.58281 -10.54197 -9.91564 -8.66230 -7.88570 -5.33992 0.51121 1.39941 1.46052 1.50423 1.75035 1.82303 1.91597 2.32360 2.50194 3.18519 3.25792 3.27610 3.44540 3.72671 3.78994 3.98867 4.11438 4.16919 4.27377 4.40171 4.52503 4.58624 4.66457 4.73080 4.83446 4.85768 4.93340 4.95334 5.07305 5.09243 5.21170 5.27242 5.37636 5.54112 5.59128 5.63600 5.66518 5.85667 6.33462 6.38352 6.81019 6.90562 7.14011 7.58178 7.87001 8.35336 9.15876 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.015912 B = 0.003877 C = 0.003391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.237082 B = 7220.102029 C = 8255.242705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.045 4.045 3 Si 0.958 3.042 4 H -0.268 1.268 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.269 4.269 8 H 0.063 0.937 9 N -0.612 5.612 10 C 0.136 3.864 11 C -0.123 4.123 12 C -0.106 4.106 13 C 0.132 3.868 14 H 0.039 0.961 15 N -0.713 5.713 16 C 0.484 3.516 17 O -0.566 6.566 18 C -0.115 4.115 19 C -0.109 4.109 20 H 0.122 0.878 21 C -0.133 4.133 22 C 0.536 3.464 23 O -0.523 6.523 24 N -0.680 5.680 25 C 0.521 3.479 26 O -0.497 6.497 27 C 0.182 3.818 28 H 0.249 0.751 29 H 0.024 0.976 30 H 0.051 0.949 31 H 0.045 0.955 32 H 0.096 0.904 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.414 0.586 36 H 0.153 0.847 37 H 0.129 0.871 38 H 0.149 0.851 39 H 0.162 0.838 40 H 0.415 0.585 41 H 0.003 0.997 42 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.486 -10.962 12.486 19.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.241 4.241 3 Si 0.786 3.214 4 H -0.193 1.193 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.400 4.400 8 H 0.081 0.919 9 N -0.336 5.336 10 C 0.011 3.989 11 C -0.163 4.163 12 C -0.144 4.144 13 C 0.025 3.975 14 H 0.057 0.943 15 N -0.367 5.367 16 C 0.271 3.729 17 O -0.443 6.443 18 C -0.154 4.154 19 C -0.131 4.131 20 H 0.140 0.860 21 C -0.172 4.172 22 C 0.326 3.674 23 O -0.398 6.398 24 N -0.345 5.345 25 C 0.308 3.692 26 O -0.367 6.367 27 C 0.055 3.945 28 H 0.058 0.942 29 H 0.042 0.958 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.114 0.886 33 H 0.100 0.900 34 H 0.097 0.903 35 H 0.251 0.749 36 H 0.171 0.829 37 H 0.147 0.853 38 H 0.167 0.833 39 H 0.180 0.820 40 H 0.254 0.746 41 H 0.021 0.979 42 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -9.797 -10.240 12.799 19.096 hybrid contribution 0.945 1.055 0.230 1.435 sum -8.853 -9.185 13.029 18.235 Atomic orbital electron populations 1.70137 1.06421 1.25679 1.54941 1.25709 0.96086 1.01228 1.01039 0.85482 0.77896 0.79879 0.78097 1.19328 1.21559 1.21657 1.19436 0.92796 0.86422 1.41302 0.91944 1.44253 1.36234 1.02660 1.50416 1.21163 0.97517 0.85714 0.94503 1.21907 0.97150 1.00016 0.97199 1.21622 0.98936 0.94229 0.99572 1.21372 0.87482 0.97534 0.91071 0.94291 1.45844 1.25649 1.32542 1.32628 1.21524 0.88632 0.81349 0.81429 1.90849 1.47005 1.35669 1.70788 1.21709 0.97438 1.00112 0.96189 1.21876 0.92213 1.03391 0.95570 0.86050 1.22676 0.97221 1.10117 0.87205 1.21253 0.81272 0.72231 0.92644 1.90808 1.64559 1.48070 1.36341 1.44908 1.11059 1.66435 1.12114 1.21265 0.90496 0.73540 0.83855 1.90918 1.19954 1.45466 1.80360 1.20781 0.87905 0.97499 0.88313 0.94243 0.95776 0.92994 0.93642 0.88561 0.90022 0.90343 0.74915 0.82889 0.85347 0.83318 0.82034 0.74595 0.97869 0.93848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.78 11.19 21.65 0.24 -56.54 16 2 C -0.04 -2.63 4.92 84.86 0.42 -2.22 16 3 Si 0.96 47.94 29.59 68.60 2.03 49.97 16 4 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 5 H -0.29 -14.32 7.11 99.48 0.71 -13.62 16 6 H -0.29 -14.70 7.11 99.48 0.71 -14.00 16 7 C -0.27 -15.71 9.58 84.04 0.81 -14.90 16 8 H 0.06 3.56 7.89 -2.91 -0.02 3.54 16 9 N -0.61 -31.93 2.99 -699.07 -2.09 -34.02 16 10 C 0.14 5.58 6.52 86.36 0.56 6.14 16 11 C -0.12 -3.93 6.08 30.67 0.19 -3.75 16 12 C -0.11 -3.09 5.35 30.62 0.16 -2.92 16 13 C 0.13 5.10 2.60 45.07 0.12 5.22 16 14 H 0.04 1.84 7.58 -2.39 -0.02 1.83 16 15 N -0.71 -20.68 5.08 -442.17 -2.25 -22.93 16 16 C 0.48 14.92 7.47 87.66 0.65 15.58 16 17 O -0.57 -25.06 13.23 18.95 0.25 -24.81 16 18 C -0.11 -1.73 5.04 29.85 0.15 -1.58 16 19 C -0.11 -1.80 2.72 -10.93 -0.03 -1.83 16 20 H 0.12 2.41 8.03 -2.38 -0.02 2.40 16 21 C -0.13 -1.04 6.67 30.46 0.20 -0.84 16 22 C 0.54 8.27 8.55 87.99 0.75 9.02 16 23 O -0.52 -11.51 18.02 -2.86 -0.05 -11.56 16 24 N -0.68 -11.99 5.48 -427.81 -2.34 -14.33 16 25 C 0.52 12.52 7.71 87.99 0.68 13.20 16 26 O -0.50 -18.08 15.42 19.14 0.30 -17.79 16 27 C 0.18 9.02 4.88 86.36 0.42 9.44 16 28 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 29 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.05 2.11 7.93 -2.39 -0.02 2.09 16 31 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 33 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.41 7.93 8.60 -92.71 -0.80 7.13 16 36 H 0.15 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.13 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.15 0.60 8.14 -2.39 -0.02 0.58 16 39 H 0.16 0.16 7.74 -2.39 -0.02 0.14 16 40 H 0.41 6.61 8.96 -92.70 -0.83 5.78 16 41 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 42 H 0.04 2.59 6.06 -2.39 -0.01 2.57 16 Total: -1.00 -90.37 344.80 0.60 -89.77 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -0.57 Total: 11.67 kcal Atomic # 6 Polarization: 25.48 SS G_CDS: 5.08 Total: 30.56 kcal Atomic # 7 Polarization: -121.38 SS G_CDS: -6.44 Total: -127.82 kcal Atomic # 8 Polarization: -54.65 SS G_CDS: 0.49 Total: -54.16 kcal Atomic # 14 Polarization: 47.94 SS G_CDS: 2.03 Total: 49.97 kcal Total: -90.37 0.60 -89.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009762542.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.742 kcal (2) G-P(sol) polarization free energy of solvation -90.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds