Wall clock time and date at job start Fri Apr 10 2020 18:01:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86795 * 120.00067 * 2 1 4 4 H 1.48508 * 109.46960 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47129 * 299.99392 * 3 2 1 6 6 H 1.48498 * 109.47357 * 60.00049 * 3 2 1 7 7 C 1.38819 * 119.99791 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00119 * 197.36460 * 7 2 1 9 9 N 1.36940 * 120.00247 * 17.36888 * 7 2 1 10 10 C 1.46926 * 120.63156 * 207.69036 * 9 7 2 11 11 C 1.53189 * 108.77335 * 233.58490 * 10 9 7 12 12 C 1.53043 * 109.31384 * 305.36607 * 11 10 9 13 13 C 1.53038 * 109.53584 * 61.36745 * 12 11 10 14 14 H 1.08999 * 109.52759 * 58.60384 * 13 12 11 15 15 N 1.46507 * 109.49341 * 178.68246 * 13 12 11 16 16 C 1.34777 * 119.99821 * 204.83658 * 15 13 12 17 17 O 1.21278 * 120.00019 * 359.97438 * 16 15 13 18 18 C 1.50699 * 119.99802 * 179.97438 * 16 15 13 19 19 C 1.53001 * 109.46865 * 180.02562 * 18 16 15 20 20 H 1.08995 * 110.54312 * 52.15418 * 19 18 16 21 21 C 1.54225 * 110.60698 * 175.00181 * 19 18 16 22 22 C 1.51317 * 103.55990 * 118.51635 * 21 19 18 23 23 O 1.21224 * 125.39690 * 180.02562 * 22 21 19 24 24 N 1.33881 * 109.20425 * 0.02562 * 22 21 19 25 25 C 1.33885 * 114.47487 * 0.02562 * 24 22 21 26 26 O 1.21221 * 125.39192 * 180.02562 * 25 24 22 27 27 C 1.46927 * 120.62765 * 27.66676 * 9 7 2 28 28 H 0.96996 * 119.99870 * 359.97438 * 1 2 3 29 29 H 1.08996 * 109.58229 * 353.37262 * 10 9 7 30 30 H 1.08996 * 109.58410 * 113.79882 * 10 9 7 31 31 H 1.09003 * 109.49821 * 65.31945 * 11 10 9 32 32 H 1.09000 * 109.49408 * 185.37901 * 11 10 9 33 33 H 1.08992 * 109.46063 * 301.34404 * 12 11 10 34 34 H 1.09000 * 109.45534 * 181.38396 * 12 11 10 35 35 H 0.96992 * 119.99796 * 24.83808 * 15 13 12 36 36 H 1.08992 * 109.47126 * 299.99880 * 18 16 15 37 37 H 1.09002 * 109.46867 * 60.00501 * 18 16 15 38 38 H 1.08998 * 110.60938 * 237.03302 * 21 19 18 39 39 H 1.09003 * 110.60391 * 0.02562 * 21 19 18 40 40 H 0.96993 * 122.76231 * 179.97438 * 24 22 21 41 41 H 1.09007 * 109.58721 * 6.62879 * 27 9 7 42 42 H 1.09002 * 109.70595 * 246.27022 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3963 -1.2126 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0534 -1.2235 0.2797 9 7 1.3724 -2.3613 -0.3530 10 6 1.8192 -3.6548 0.1819 11 6 2.0742 -4.6104 -0.9879 12 6 0.8185 -4.6904 -1.8592 13 6 0.5008 -3.3054 -2.4274 14 1 1.3491 -2.9476 -3.0109 15 7 -0.6831 -3.3891 -3.2864 16 6 -0.8708 -2.4820 -4.2654 17 8 -0.0600 -1.5962 -4.4349 18 6 -2.0882 -2.5685 -5.1494 19 6 -2.0591 -1.4293 -6.1703 20 1 -1.1049 -1.4119 -6.6969 21 6 -3.2273 -1.5646 -7.1681 22 6 -4.0278 -0.2990 -6.9509 23 8 -5.0433 -0.0005 -7.5417 24 7 -3.4367 0.4387 -6.0029 25 6 -2.3214 -0.1007 -5.4952 26 8 -1.6322 0.3957 -4.6304 27 6 0.2279 -2.3349 -1.2739 28 1 -0.4850 0.8400 0.0004 29 1 2.7398 -3.5173 0.7488 30 1 1.0467 -4.0685 0.8301 31 1 2.9081 -4.2406 -1.5846 32 1 2.3139 -5.6014 -0.6024 33 1 -0.0206 -5.0366 -1.2559 34 1 0.9890 -5.3887 -2.6785 35 1 -1.3316 -4.0974 -3.1506 36 1 -2.0901 -3.5247 -5.6725 37 1 -2.9873 -2.4866 -4.5386 38 1 -2.8544 -1.6118 -8.1912 39 1 -3.8294 -2.4433 -6.9369 40 1 -3.7871 1.2939 -5.7087 41 1 0.0987 -1.3266 -1.6675 42 1 -0.6758 -2.6397 -0.7460 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001009762543.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:16 Heat of formation + Delta-G solvation = -83.453157 kcal Electronic energy + Delta-G solvation = -26376.314808 eV Core-core repulsion = 22550.006033 eV Total energy + Delta-G solvation = -3826.308775 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.152 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.92524 -39.45650 -38.53814 -37.25915 -35.92497 -34.08966 -33.62361 -32.61950 -30.07124 -29.56967 -28.06107 -25.23189 -25.17716 -22.37314 -22.04513 -21.79989 -20.82589 -19.85260 -19.21544 -17.97165 -17.14305 -16.72054 -16.48736 -16.20565 -15.46298 -15.39086 -14.88262 -14.50072 -14.14583 -14.00269 -13.89807 -13.74120 -13.45391 -13.16329 -13.01383 -12.70196 -12.41920 -12.25951 -12.12018 -11.79998 -11.50388 -10.96981 -10.79268 -10.69968 -10.66587 -10.45336 -10.35625 -10.18848 -10.01836 -9.90275 -9.88253 -9.47344 -9.29335 -8.47233 -8.36562 -6.60258 -5.69357 -3.12493 1.42151 2.64277 2.67453 3.06309 3.44264 3.48479 3.55459 3.57460 3.89058 4.05618 4.20939 4.45193 4.60217 4.88935 5.07493 5.09451 5.28453 5.33969 5.39666 5.45129 5.58229 5.62682 5.67201 5.73740 5.88155 6.11134 6.16104 6.36391 6.43889 6.53543 6.54097 6.73047 6.80232 6.97759 7.00115 7.20607 7.35384 7.80496 7.83317 7.89573 7.97092 8.54424 8.70604 9.29325 9.93531 10.47763 11.38575 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.014422 B = 0.004437 C = 0.003556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.055799 B = 6308.946102 C = 7872.060869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.009 3.991 3 Si 0.900 3.100 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.291 1.291 7 C -0.259 4.259 8 H 0.066 0.934 9 N -0.589 5.589 10 C 0.142 3.858 11 C -0.131 4.131 12 C -0.115 4.115 13 C 0.118 3.882 14 H 0.081 0.919 15 N -0.723 5.723 16 C 0.500 3.500 17 O -0.508 6.508 18 C -0.128 4.128 19 C -0.108 4.108 20 H 0.133 0.867 21 C -0.155 4.155 22 C 0.531 3.469 23 O -0.496 6.496 24 N -0.685 5.685 25 C 0.516 3.484 26 O -0.425 6.425 27 C 0.167 3.833 28 H 0.253 0.747 29 H 0.055 0.945 30 H 0.017 0.983 31 H 0.060 0.940 32 H 0.054 0.946 33 H 0.058 0.942 34 H 0.049 0.951 35 H 0.390 0.610 36 H 0.109 0.891 37 H 0.096 0.904 38 H 0.123 0.877 39 H 0.122 0.878 40 H 0.414 0.586 41 H 0.097 0.903 42 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.132 -10.097 -13.634 18.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.190 4.190 3 Si 0.730 3.270 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.218 1.218 7 C -0.389 4.389 8 H 0.084 0.916 9 N -0.311 5.311 10 C 0.016 3.984 11 C -0.171 4.171 12 C -0.153 4.153 13 C 0.013 3.987 14 H 0.099 0.901 15 N -0.374 5.374 16 C 0.284 3.716 17 O -0.382 6.382 18 C -0.168 4.168 19 C -0.130 4.130 20 H 0.150 0.850 21 C -0.195 4.195 22 C 0.319 3.681 23 O -0.368 6.368 24 N -0.352 5.352 25 C 0.300 3.700 26 O -0.290 6.290 27 C 0.040 3.960 28 H 0.063 0.937 29 H 0.073 0.927 30 H 0.035 0.965 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.223 0.777 36 H 0.127 0.873 37 H 0.114 0.886 38 H 0.141 0.859 39 H 0.140 0.860 40 H 0.253 0.747 41 H 0.115 0.885 42 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges -6.673 -9.002 -13.593 17.617 hybrid contribution -0.245 0.930 0.251 0.994 sum -6.917 -8.072 -13.342 17.059 Atomic orbital electron populations 1.70003 1.05354 1.25448 1.53155 1.25008 0.95225 0.98420 1.00362 0.86270 0.79362 0.84158 0.77239 1.20228 1.21354 1.21824 1.19163 0.92715 0.84830 1.42155 0.91629 1.43975 1.36045 1.01575 1.49550 1.20950 0.97670 0.86963 0.92856 1.22003 0.97007 0.99271 0.98809 1.21668 0.98850 0.96121 0.98680 1.21938 0.87075 0.96673 0.92996 0.90078 1.46027 1.26420 1.31048 1.33927 1.20253 0.87573 0.82314 0.81473 1.90830 1.44992 1.32426 1.69911 1.21607 0.99058 0.98979 0.97170 1.21818 1.01620 0.93101 0.96470 0.84965 1.22600 0.96661 0.97600 1.02590 1.20746 0.83751 0.86082 0.77509 1.90801 1.22900 1.74664 1.48481 1.44898 1.27339 1.24480 1.38457 1.20738 0.79466 0.87524 0.82246 1.91021 1.47036 1.64859 1.26065 1.21092 0.88508 0.99222 0.87222 0.93716 0.92682 0.96518 0.92150 0.92714 0.92368 0.93192 0.77691 0.87317 0.88567 0.85933 0.85970 0.74695 0.88491 0.96796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.53 11.19 55.49 0.62 -26.91 16 2 C 0.01 0.27 4.91 -17.43 -0.09 0.19 16 3 Si 0.90 23.26 29.59 -169.99 -5.03 18.23 16 4 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.64 7.11 56.52 0.40 -7.24 16 6 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 7 C -0.26 -7.45 9.59 -15.06 -0.14 -7.59 16 8 H 0.07 1.84 7.89 -52.48 -0.41 1.43 16 9 N -0.59 -15.21 2.99 -172.32 -0.52 -15.73 16 10 C 0.14 2.97 6.52 -3.71 -0.02 2.95 16 11 C -0.13 -2.21 6.08 -26.61 -0.16 -2.37 16 12 C -0.11 -1.81 5.35 -26.69 -0.14 -1.95 16 13 C 0.12 2.27 2.60 -67.81 -0.18 2.09 16 14 H 0.08 1.78 7.58 -51.93 -0.39 1.39 16 15 N -0.72 -10.91 5.08 -53.69 -0.27 -11.18 16 16 C 0.50 7.81 7.49 -10.99 -0.08 7.72 16 17 O -0.51 -10.65 13.63 -15.63 -0.21 -10.86 16 18 C -0.13 -1.18 5.01 -27.88 -0.14 -1.32 16 19 C -0.11 -1.02 2.68 -90.83 -0.24 -1.26 16 20 H 0.13 1.25 7.89 -51.93 -0.41 0.84 16 21 C -0.15 -0.94 6.67 -26.94 -0.18 -1.12 16 22 C 0.53 5.13 8.55 -11.08 -0.09 5.04 16 23 O -0.50 -6.31 18.02 5.61 0.10 -6.21 16 24 N -0.68 -7.27 5.48 -11.39 -0.06 -7.34 16 25 C 0.52 6.95 7.72 -11.08 -0.09 6.86 16 26 O -0.43 -8.39 15.90 -15.58 -0.25 -8.63 16 27 C 0.17 4.11 4.88 -3.71 -0.02 4.09 16 28 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 29 H 0.05 1.13 7.93 -51.93 -0.41 0.72 16 30 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.39 4.37 8.60 -40.82 -0.35 4.02 16 36 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.10 0.79 8.12 -51.93 -0.42 0.37 16 38 H 0.12 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.12 0.46 7.74 -51.93 -0.40 0.06 16 40 H 0.41 4.04 8.96 -40.82 -0.37 3.68 16 41 H 0.10 2.87 6.04 -51.92 -0.31 2.56 16 42 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 345.46 15.07 5.21 5.21 Total: -1.00 -38.82 345.46 -7.99 -46.81 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -6.00 Total: 3.26 kcal Atomic # 6 Polarization: 14.92 SS G_CDS: -1.58 Total: 13.34 kcal Atomic # 7 Polarization: -60.92 SS G_CDS: -0.23 Total: -61.15 kcal Atomic # 8 Polarization: -25.34 SS G_CDS: -0.36 Total: -25.70 kcal Atomic # 14 Polarization: 23.26 SS G_CDS: -5.03 Total: 18.23 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -38.82 -7.99 -46.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009762543.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.640 kcal (2) G-P(sol) polarization free energy of solvation -38.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds