Wall clock time and date at job start Fri Apr 10 2020 18:01:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86795 * 120.00067 * 2 1 4 4 H 1.48508 * 109.46960 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47129 * 299.99392 * 3 2 1 6 6 H 1.48498 * 109.47357 * 60.00049 * 3 2 1 7 7 C 1.38819 * 119.99791 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00119 * 197.36460 * 7 2 1 9 9 N 1.36940 * 120.00247 * 17.36888 * 7 2 1 10 10 C 1.46926 * 120.63156 * 207.69036 * 9 7 2 11 11 C 1.53189 * 108.77335 * 233.58490 * 10 9 7 12 12 C 1.53043 * 109.31384 * 305.36607 * 11 10 9 13 13 C 1.53038 * 109.53584 * 61.36745 * 12 11 10 14 14 H 1.08999 * 109.52759 * 58.60384 * 13 12 11 15 15 N 1.46507 * 109.49341 * 178.68246 * 13 12 11 16 16 C 1.34777 * 119.99821 * 204.83658 * 15 13 12 17 17 O 1.21278 * 120.00019 * 359.97438 * 16 15 13 18 18 C 1.50699 * 119.99802 * 179.97438 * 16 15 13 19 19 C 1.53001 * 109.46865 * 180.02562 * 18 16 15 20 20 H 1.08995 * 110.54312 * 52.15418 * 19 18 16 21 21 C 1.54225 * 110.60698 * 175.00181 * 19 18 16 22 22 C 1.51317 * 103.55990 * 118.51635 * 21 19 18 23 23 O 1.21224 * 125.39690 * 180.02562 * 22 21 19 24 24 N 1.33881 * 109.20425 * 0.02562 * 22 21 19 25 25 C 1.33885 * 114.47487 * 0.02562 * 24 22 21 26 26 O 1.21221 * 125.39192 * 180.02562 * 25 24 22 27 27 C 1.46927 * 120.62765 * 27.66676 * 9 7 2 28 28 H 0.96996 * 119.99870 * 359.97438 * 1 2 3 29 29 H 1.08996 * 109.58229 * 353.37262 * 10 9 7 30 30 H 1.08996 * 109.58410 * 113.79882 * 10 9 7 31 31 H 1.09003 * 109.49821 * 65.31945 * 11 10 9 32 32 H 1.09000 * 109.49408 * 185.37901 * 11 10 9 33 33 H 1.08992 * 109.46063 * 301.34404 * 12 11 10 34 34 H 1.09000 * 109.45534 * 181.38396 * 12 11 10 35 35 H 0.96992 * 119.99796 * 24.83808 * 15 13 12 36 36 H 1.08992 * 109.47126 * 299.99880 * 18 16 15 37 37 H 1.09002 * 109.46867 * 60.00501 * 18 16 15 38 38 H 1.08998 * 110.60938 * 237.03302 * 21 19 18 39 39 H 1.09003 * 110.60391 * 0.02562 * 21 19 18 40 40 H 0.96993 * 122.76231 * 179.97438 * 24 22 21 41 41 H 1.09007 * 109.58721 * 6.62879 * 27 9 7 42 42 H 1.09002 * 109.70595 * 246.27022 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3963 -1.2126 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0534 -1.2235 0.2797 9 7 1.3724 -2.3613 -0.3530 10 6 1.8192 -3.6548 0.1819 11 6 2.0742 -4.6104 -0.9879 12 6 0.8185 -4.6904 -1.8592 13 6 0.5008 -3.3054 -2.4274 14 1 1.3491 -2.9476 -3.0109 15 7 -0.6831 -3.3891 -3.2864 16 6 -0.8708 -2.4820 -4.2654 17 8 -0.0600 -1.5962 -4.4349 18 6 -2.0882 -2.5685 -5.1494 19 6 -2.0591 -1.4293 -6.1703 20 1 -1.1049 -1.4119 -6.6969 21 6 -3.2273 -1.5646 -7.1681 22 6 -4.0278 -0.2990 -6.9509 23 8 -5.0433 -0.0005 -7.5417 24 7 -3.4367 0.4387 -6.0029 25 6 -2.3214 -0.1007 -5.4952 26 8 -1.6322 0.3957 -4.6304 27 6 0.2279 -2.3349 -1.2739 28 1 -0.4850 0.8400 0.0004 29 1 2.7398 -3.5173 0.7488 30 1 1.0467 -4.0685 0.8301 31 1 2.9081 -4.2406 -1.5846 32 1 2.3139 -5.6014 -0.6024 33 1 -0.0206 -5.0366 -1.2559 34 1 0.9890 -5.3887 -2.6785 35 1 -1.3316 -4.0974 -3.1506 36 1 -2.0901 -3.5247 -5.6725 37 1 -2.9873 -2.4866 -4.5386 38 1 -2.8544 -1.6118 -8.1912 39 1 -3.8294 -2.4433 -6.9369 40 1 -3.7871 1.2939 -5.7087 41 1 0.0987 -1.3266 -1.6675 42 1 -0.6758 -2.6397 -0.7460 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001009762543.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:15 Heat of formation + Delta-G solvation = -115.143874 kcal Electronic energy + Delta-G solvation = -26377.689021 eV Core-core repulsion = 22550.006033 eV Total energy + Delta-G solvation = -3827.682988 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.152 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.82485 -40.73539 -39.63812 -38.83635 -36.96293 -35.72998 -34.51621 -34.36361 -31.92250 -30.90241 -29.13065 -27.24304 -26.15112 -23.96404 -23.62319 -22.64060 -21.91208 -21.19767 -20.64782 -18.93081 -18.74255 -18.15341 -17.53384 -17.27443 -16.99921 -16.54335 -16.37801 -15.84450 -15.54822 -15.34241 -15.19372 -15.02494 -14.81106 -14.60178 -14.16971 -14.03612 -13.81137 -13.64759 -13.36212 -12.99086 -12.93502 -12.69237 -12.44395 -12.22637 -12.16098 -12.06148 -11.69922 -11.66206 -11.55466 -11.39185 -11.22735 -11.00900 -10.61400 -10.57632 -9.93299 -8.70097 -7.91321 -5.36380 0.51284 1.34884 1.41284 1.48729 1.75682 1.82068 1.89444 2.33299 2.47402 3.18539 3.24163 3.26390 3.46249 3.73536 3.77376 3.99821 4.09609 4.18271 4.30883 4.43731 4.51401 4.59619 4.66563 4.69057 4.84442 4.85193 4.94050 4.96047 5.04837 5.10921 5.22661 5.27746 5.37851 5.53704 5.59100 5.61985 5.67697 5.85651 6.34388 6.34930 6.80270 6.89276 7.10762 7.56883 7.85522 8.32776 9.12484 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.014422 B = 0.004437 C = 0.003556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.055799 B = 6308.946102 C = 7872.060869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.049 4.049 3 Si 0.956 3.044 4 H -0.259 1.259 5 H -0.305 1.305 6 H -0.284 1.284 7 C -0.263 4.263 8 H 0.068 0.932 9 N -0.611 5.611 10 C 0.134 3.866 11 C -0.122 4.122 12 C -0.104 4.104 13 C 0.134 3.866 14 H 0.047 0.953 15 N -0.713 5.713 16 C 0.486 3.514 17 O -0.569 6.569 18 C -0.116 4.116 19 C -0.103 4.103 20 H 0.133 0.867 21 C -0.129 4.129 22 C 0.532 3.468 23 O -0.525 6.525 24 N -0.685 5.685 25 C 0.512 3.488 26 O -0.504 6.504 27 C 0.179 3.821 28 H 0.244 0.756 29 H 0.053 0.947 30 H 0.021 0.979 31 H 0.050 0.950 32 H 0.097 0.903 33 H 0.073 0.927 34 H 0.090 0.910 35 H 0.414 0.586 36 H 0.170 0.830 37 H 0.112 0.888 38 H 0.157 0.843 39 H 0.163 0.837 40 H 0.411 0.589 41 H 0.038 0.962 42 H -0.006 1.006 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.693 -13.937 -15.528 22.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.245 4.245 3 Si 0.785 3.215 4 H -0.183 1.183 5 H -0.232 1.232 6 H -0.210 1.210 7 C -0.394 4.394 8 H 0.086 0.914 9 N -0.335 5.335 10 C 0.009 3.991 11 C -0.162 4.162 12 C -0.142 4.142 13 C 0.027 3.973 14 H 0.065 0.935 15 N -0.366 5.366 16 C 0.274 3.726 17 O -0.447 6.447 18 C -0.155 4.155 19 C -0.125 4.125 20 H 0.151 0.849 21 C -0.168 4.168 22 C 0.323 3.677 23 O -0.400 6.400 24 N -0.350 5.350 25 C 0.300 3.700 26 O -0.374 6.374 27 C 0.052 3.948 28 H 0.053 0.947 29 H 0.071 0.929 30 H 0.039 0.961 31 H 0.068 0.932 32 H 0.116 0.884 33 H 0.092 0.908 34 H 0.109 0.891 35 H 0.251 0.749 36 H 0.187 0.813 37 H 0.131 0.869 38 H 0.174 0.826 39 H 0.181 0.819 40 H 0.250 0.750 41 H 0.057 0.943 42 H 0.012 0.988 Dipole moment (debyes) X Y Z Total from point charges -7.268 -12.927 -15.509 21.459 hybrid contribution -0.094 2.134 0.856 2.302 sum -7.362 -10.793 -14.653 19.631 Atomic orbital electron populations 1.70163 1.06720 1.25256 1.55238 1.25739 0.95957 1.01456 1.01321 0.85361 0.79202 0.80494 0.76438 1.18293 1.23241 1.21045 1.19524 0.93018 0.86287 1.40540 0.91393 1.44283 1.36038 1.02641 1.50574 1.21192 0.97413 0.85652 0.94803 1.21902 0.97284 0.99953 0.97024 1.21622 0.98754 0.94040 0.99817 1.21362 0.87592 0.97474 0.90900 0.93454 1.45859 1.25821 1.31853 1.33109 1.21506 0.88705 0.80802 0.81635 1.90819 1.47678 1.34646 1.71572 1.21734 0.95728 1.01604 0.96444 1.21901 1.03318 0.90414 0.96864 0.84879 1.22706 0.94497 0.96479 1.03118 1.21414 0.83266 0.86848 0.76163 1.90801 1.24346 1.75532 1.49287 1.45019 1.26789 1.24652 1.38498 1.21582 0.78743 0.88759 0.80918 1.90996 1.49608 1.67088 1.29753 1.20788 0.87677 0.97710 0.88619 0.94734 0.92852 0.96136 0.93162 0.88422 0.90830 0.89128 0.74912 0.81262 0.86943 0.82581 0.81932 0.75015 0.94308 0.98772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -60.51 11.19 21.65 0.24 -60.26 16 2 C -0.05 -3.02 4.91 84.86 0.42 -2.60 16 3 Si 0.96 50.06 29.59 68.60 2.03 52.09 16 4 H -0.26 -12.62 7.11 99.48 0.71 -11.91 16 5 H -0.30 -16.69 7.11 99.48 0.71 -15.98 16 6 H -0.28 -14.37 7.11 99.48 0.71 -13.67 16 7 C -0.26 -15.66 9.59 84.03 0.81 -14.86 16 8 H 0.07 3.91 7.89 -2.91 -0.02 3.88 16 9 N -0.61 -32.50 2.99 -699.09 -2.09 -34.59 16 10 C 0.13 5.53 6.52 86.36 0.56 6.09 16 11 C -0.12 -3.77 6.08 30.67 0.19 -3.58 16 12 C -0.10 -2.93 5.35 30.62 0.16 -2.76 16 13 C 0.13 5.09 2.60 45.07 0.12 5.21 16 14 H 0.05 2.14 7.58 -2.39 -0.02 2.12 16 15 N -0.71 -20.50 5.08 -442.16 -2.25 -22.74 16 16 C 0.49 14.87 7.49 87.66 0.66 15.53 16 17 O -0.57 -25.01 13.63 17.24 0.23 -24.78 16 18 C -0.12 -1.72 5.01 29.85 0.15 -1.57 16 19 C -0.10 -1.68 2.68 -10.93 -0.03 -1.71 16 20 H 0.13 2.26 7.89 -2.39 -0.02 2.24 16 21 C -0.13 -0.94 6.67 30.46 0.20 -0.74 16 22 C 0.53 9.16 8.55 87.99 0.75 9.91 16 23 O -0.52 -12.44 18.02 -2.86 -0.05 -12.49 16 24 N -0.68 -14.62 5.48 -427.78 -2.34 -16.96 16 25 C 0.51 14.17 7.72 87.99 0.68 14.85 16 26 O -0.50 -21.63 15.90 17.42 0.28 -21.36 16 27 C 0.18 9.23 4.88 86.36 0.42 9.65 16 28 H 0.24 15.65 8.31 -92.71 -0.77 14.88 16 29 H 0.05 2.16 7.93 -2.39 -0.02 2.14 16 30 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.10 2.24 8.14 -2.39 -0.02 2.23 16 33 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.41 7.85 8.60 -92.71 -0.80 7.05 16 36 H 0.17 0.55 8.14 -2.39 -0.02 0.53 16 37 H 0.11 1.41 8.12 -2.39 -0.02 1.39 16 38 H 0.16 0.30 8.14 -2.39 -0.02 0.28 16 39 H 0.16 0.05 7.74 -2.39 -0.02 0.03 16 40 H 0.41 8.62 8.96 -92.71 -0.83 7.79 16 41 H 0.04 2.46 6.04 -2.38 -0.01 2.44 16 42 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 Total: -1.00 -96.90 345.46 0.57 -96.33 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -0.57 Total: 11.36 kcal Atomic # 6 Polarization: 28.32 SS G_CDS: 5.09 Total: 33.41 kcal Atomic # 7 Polarization: -128.12 SS G_CDS: -6.44 Total: -134.56 kcal Atomic # 8 Polarization: -59.09 SS G_CDS: 0.46 Total: -58.63 kcal Atomic # 14 Polarization: 50.06 SS G_CDS: 2.03 Total: 52.09 kcal Total: -96.90 0.57 -96.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009762543.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.812 kcal (2) G-P(sol) polarization free energy of solvation -96.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds