Wall clock time and date at job start Fri Apr 10 2020 17:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 119.99887 * 2 1 4 4 H 1.48504 * 109.46998 * 354.58433 * 3 2 1 5 5 H 1.48496 * 109.47063 * 234.58459 * 3 2 1 6 6 H 1.48504 * 109.46801 * 114.58391 * 3 2 1 7 7 C 1.38807 * 120.00144 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00263 * 8.38855 * 7 2 1 9 9 N 1.36935 * 120.00078 * 188.39742 * 7 2 1 10 10 C 1.47429 * 125.64983 * 29.01536 * 9 7 2 11 11 C 1.55133 * 104.72084 * 155.82406 * 10 9 7 12 12 C 1.55155 * 101.48693 * 37.29784 * 11 10 9 13 13 C 1.47024 * 125.64590 * 209.33232 * 9 7 2 14 14 H 1.08996 * 109.88213 * 300.43146 * 13 9 7 15 15 C 1.53000 * 109.88134 * 61.44899 * 13 9 7 16 16 N 1.46498 * 109.46970 * 300.63679 * 15 13 9 17 17 C 1.34775 * 120.00301 * 173.92669 * 16 15 13 18 18 O 1.21284 * 119.99814 * 0.02562 * 17 16 15 19 19 C 1.50697 * 120.00483 * 179.97438 * 17 16 15 20 20 C 1.53242 * 109.62260 * 299.07763 * 19 17 16 21 21 C 1.50582 * 109.17099 * 184.67851 * 20 19 17 22 22 O 1.21233 * 119.35733 * 209.07611 * 21 20 19 23 23 N 1.34137 * 121.28423 * 29.07466 * 21 20 19 24 24 C 1.34143 * 122.58630 * 359.45147 * 23 21 20 25 25 O 1.21230 * 119.36004 * 180.54262 * 24 23 21 26 26 C 1.50591 * 121.27964 * 0.57677 * 24 23 21 27 27 H 0.96999 * 120.00086 * 184.86630 * 1 2 3 28 28 H 1.09000 * 110.36570 * 274.75493 * 10 9 7 29 29 H 1.09000 * 110.36467 * 37.07945 * 10 9 7 30 30 H 1.08998 * 111.19246 * 279.19410 * 11 10 9 31 31 H 1.09000 * 110.90617 * 155.27832 * 11 10 9 32 32 H 1.09002 * 110.71986 * 205.97110 * 12 11 10 33 33 H 1.08994 * 110.87495 * 82.76433 * 12 11 10 34 34 H 1.08993 * 109.47822 * 60.64063 * 15 13 9 35 35 H 1.09003 * 109.46885 * 180.63952 * 15 13 9 36 36 H 0.97001 * 120.00224 * 353.92103 * 16 15 13 37 37 H 1.09001 * 109.61995 * 59.63068 * 19 17 16 38 38 H 1.08998 * 109.51936 * 304.56627 * 20 19 17 39 39 H 1.08999 * 109.52055 * 64.75240 * 20 19 17 40 40 H 0.96999 * 118.71162 * 179.43648 * 23 21 20 41 41 H 1.08996 * 109.51864 * 210.97307 * 26 24 23 42 42 H 1.08994 * 109.57605 * 90.81560 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2905 2.7434 -0.1321 5 1 3.2003 1.6408 -1.1410 6 1 3.0021 1.7552 1.2732 7 6 2.0103 -1.2021 0.0005 8 1 1.4790 -2.1325 -0.1355 9 7 3.3686 -1.2083 0.1737 10 6 4.1426 -0.2096 0.9333 11 6 5.4385 -0.9516 1.3536 12 6 5.7151 -1.8241 0.1008 13 6 4.2974 -2.2086 -0.3725 14 1 4.0376 -3.1989 0.0014 15 6 4.2347 -2.1968 -1.9012 16 7 2.8688 -2.4987 -2.3362 17 6 2.5452 -2.4232 -3.6424 18 8 3.3851 -2.1056 -4.4577 19 6 1.1403 -2.7343 -4.0900 20 6 0.7931 -4.1819 -3.7265 21 6 -0.5669 -4.5179 -4.2788 22 8 -1.2524 -5.3408 -3.7107 23 7 -1.0347 -3.9243 -5.3870 24 6 -0.3361 -2.9979 -6.0601 25 8 -0.8197 -2.4918 -7.0499 26 6 1.0375 -2.5749 -5.6106 27 1 -0.4850 -0.8370 0.0713 28 1 4.3806 0.6463 0.3017 29 1 3.5868 0.1109 1.8144 30 1 5.2692 -1.5731 2.2329 31 1 6.2518 -0.2467 1.5261 32 1 6.2866 -2.7129 0.3684 33 1 6.2349 -1.2494 -0.6657 34 1 4.5240 -1.2125 -2.2692 35 1 4.9171 -2.9482 -2.2986 36 1 2.1972 -2.7532 -1.6842 37 1 0.4418 -2.0541 -3.6026 38 1 1.5364 -4.8536 -4.1559 39 1 0.7838 -4.2930 -2.6422 40 1 -1.9126 -4.1750 -5.7147 41 1 1.2036 -1.5318 -5.8797 42 1 1.7884 -3.1998 -6.0940 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028201267.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:45 Heat of formation + Delta-G solvation = -90.376466 kcal Electronic energy + Delta-G solvation = -26621.856356 eV Core-core repulsion = 22795.247364 eV Total energy + Delta-G solvation = -3826.608992 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.152 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.64916 -39.48497 -38.93788 -38.04391 -35.50528 -34.12993 -33.84771 -32.90736 -29.97699 -29.66100 -28.86551 -25.85503 -24.38703 -23.36976 -23.14249 -21.25307 -20.02685 -19.55003 -19.32920 -17.94546 -17.73631 -17.37485 -16.83681 -15.96891 -15.84594 -15.42068 -15.20923 -15.02464 -14.73110 -14.45411 -14.24332 -13.83645 -13.55223 -13.35439 -13.21287 -12.78549 -12.48140 -12.37815 -11.80326 -11.61106 -11.48728 -11.32159 -11.17967 -11.06447 -10.90623 -10.77950 -10.54011 -10.40464 -10.34220 -10.05912 -9.52636 -9.50924 -9.22887 -8.83507 -8.49288 -7.12942 -6.47615 -3.55508 1.34283 2.56186 2.64051 2.86594 3.32948 3.44000 3.50640 3.61606 3.81302 4.29178 4.43551 4.47482 4.60355 4.84500 4.85590 5.08973 5.17839 5.19145 5.22819 5.32718 5.41268 5.47145 5.66383 5.73053 5.76014 5.81196 5.85912 5.99621 6.02398 6.15961 6.20782 6.30020 6.55488 6.65633 6.66895 6.73309 6.92652 7.18231 7.60362 7.65459 7.98157 8.15205 8.57153 8.80491 9.35011 10.09637 10.97968 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.015756 B = 0.004555 C = 0.004203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.633762 B = 6145.652940 C = 6660.467169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.004 4.004 3 Si 1.062 2.938 4 H -0.300 1.300 5 H -0.291 1.291 6 H -0.284 1.284 7 C -0.325 4.325 8 H 0.068 0.932 9 N -0.603 5.603 10 C 0.108 3.892 11 C -0.131 4.131 12 C -0.124 4.124 13 C 0.143 3.857 14 H 0.044 0.956 15 C 0.115 3.885 16 N -0.692 5.692 17 C 0.520 3.480 18 O -0.555 6.555 19 C -0.115 4.115 20 C -0.133 4.133 21 C 0.532 3.468 22 O -0.500 6.500 23 N -0.676 5.676 24 C 0.530 3.470 25 O -0.503 6.503 26 C -0.121 4.121 27 H 0.263 0.737 28 H 0.025 0.975 29 H 0.060 0.940 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.053 0.947 36 H 0.411 0.589 37 H 0.119 0.881 38 H 0.117 0.883 39 H 0.121 0.879 40 H 0.412 0.588 41 H 0.123 0.877 42 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.612 -7.520 -4.746 11.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.206 4.206 3 Si 0.893 3.107 4 H -0.228 1.228 5 H -0.219 1.219 6 H -0.212 1.212 7 C -0.452 4.452 8 H 0.086 0.914 9 N -0.330 5.330 10 C -0.017 4.017 11 C -0.170 4.170 12 C -0.162 4.162 13 C 0.036 3.964 14 H 0.062 0.938 15 C -0.011 4.011 16 N -0.344 5.344 17 C 0.304 3.696 18 O -0.434 6.434 19 C -0.137 4.137 20 C -0.173 4.173 21 C 0.321 3.679 22 O -0.373 6.373 23 N -0.341 5.341 24 C 0.319 3.681 25 O -0.375 6.375 26 C -0.160 4.160 27 H 0.073 0.927 28 H 0.042 0.958 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.071 0.929 36 H 0.251 0.749 37 H 0.137 0.863 38 H 0.135 0.865 39 H 0.139 0.861 40 H 0.251 0.749 41 H 0.141 0.859 42 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 6.497 -5.769 -5.487 10.276 hybrid contribution -0.578 -1.767 0.276 1.880 sum 5.920 -7.536 -5.211 10.908 Atomic orbital electron populations 1.70936 1.05856 1.29648 1.49297 1.26147 0.96396 1.01274 0.96785 0.83903 0.73924 0.76152 0.76694 1.22770 1.21869 1.21156 1.19806 0.79851 0.94213 1.51362 0.91431 1.44829 1.02657 1.28077 1.57423 1.22224 0.91741 0.92548 0.95140 1.22769 0.98044 0.98761 0.97413 1.22517 0.96025 0.99713 0.97962 1.21336 0.90299 0.94462 0.90344 0.93789 1.21945 0.82340 1.00221 0.96590 1.46088 1.13760 1.67265 1.07304 1.19885 0.88543 0.77985 0.83150 1.90673 1.50600 1.49094 1.53057 1.21506 0.98248 0.97526 0.96424 1.21935 0.93557 0.96880 1.04960 1.20797 0.88900 0.79414 0.78781 1.90802 1.58159 1.31325 1.56980 1.44872 1.22470 1.39480 1.27280 1.21019 0.87867 0.76989 0.82260 1.90786 1.69766 1.52053 1.24902 1.21755 0.92479 1.06819 0.94985 0.92664 0.95788 0.92146 0.91374 0.91689 0.91462 0.91321 0.91769 0.92920 0.74940 0.86320 0.86521 0.86056 0.74904 0.85921 0.86188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.98 13.70 55.49 0.76 -25.22 16 2 C 0.00 -0.10 5.50 -17.43 -0.10 -0.20 16 3 Si 1.06 25.06 24.71 -169.99 -4.20 20.86 16 4 H -0.30 -7.41 7.11 56.52 0.40 -7.01 16 5 H -0.29 -6.84 7.05 56.52 0.40 -6.44 16 6 H -0.28 -6.16 5.58 56.52 0.32 -5.85 16 7 C -0.32 -7.78 8.49 -15.06 -0.13 -7.90 16 8 H 0.07 1.66 6.79 -52.49 -0.36 1.30 16 9 N -0.60 -12.56 2.87 -162.43 -0.47 -13.03 16 10 C 0.11 2.10 4.52 -2.41 -0.01 2.09 16 11 C -0.13 -1.94 7.10 -24.46 -0.17 -2.12 16 12 C -0.12 -1.71 6.48 -24.89 -0.16 -1.87 16 13 C 0.14 2.40 3.37 -66.95 -0.23 2.17 16 14 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 15 C 0.11 1.91 5.22 -4.04 -0.02 1.89 16 16 N -0.69 -11.42 4.72 -60.30 -0.28 -11.71 16 17 C 0.52 8.21 7.16 -10.99 -0.08 8.14 16 18 O -0.55 -10.15 15.93 5.55 0.09 -10.06 16 19 C -0.12 -1.45 2.66 -91.52 -0.24 -1.69 16 20 C -0.13 -1.40 5.24 -27.82 -0.15 -1.55 16 21 C 0.53 6.34 7.74 -11.33 -0.09 6.25 16 22 O -0.50 -7.51 17.88 5.60 0.10 -7.41 16 23 N -0.68 -7.46 5.09 -11.75 -0.06 -7.52 16 24 C 0.53 6.45 7.74 -11.32 -0.09 6.36 16 25 O -0.50 -7.64 17.88 5.60 0.10 -7.54 16 26 C -0.12 -1.39 4.70 -27.81 -0.13 -1.52 16 27 H 0.26 7.31 8.73 -40.82 -0.36 6.96 16 28 H 0.02 0.49 5.44 -51.93 -0.28 0.21 16 29 H 0.06 1.25 6.61 -51.93 -0.34 0.91 16 30 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.07 0.91 7.84 -51.93 -0.41 0.51 16 34 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 35 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.41 6.93 5.40 -40.82 -0.22 6.71 16 37 H 0.12 1.62 8.14 -51.93 -0.42 1.20 16 38 H 0.12 0.99 8.14 -51.93 -0.42 0.56 16 39 H 0.12 1.29 7.77 -51.93 -0.40 0.88 16 40 H 0.41 4.11 8.79 -40.82 -0.36 3.76 16 41 H 0.12 1.51 8.14 -51.93 -0.42 1.09 16 42 H 0.12 1.23 7.98 -51.93 -0.41 0.82 16 LS Contribution 337.02 15.07 5.08 5.08 Total: -1.00 -31.84 337.02 -6.30 -38.14 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: -5.83 Total: 8.35 kcal Atomic # 6 Polarization: 11.63 SS G_CDS: -1.59 Total: 10.04 kcal Atomic # 7 Polarization: -57.42 SS G_CDS: -0.05 Total: -57.47 kcal Atomic # 8 Polarization: -25.29 SS G_CDS: 0.29 Total: -25.00 kcal Atomic # 14 Polarization: 25.06 SS G_CDS: -4.20 Total: 20.86 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.84 -6.30 -38.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028201267.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.232 kcal (2) G-P(sol) polarization free energy of solvation -31.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds