Wall clock time and date at job start Fri Apr 10 2020 17:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 119.99887 * 2 1 4 4 H 1.48504 * 109.46998 * 354.58433 * 3 2 1 5 5 H 1.48496 * 109.47063 * 234.58459 * 3 2 1 6 6 H 1.48504 * 109.46801 * 114.58391 * 3 2 1 7 7 C 1.38807 * 120.00144 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00263 * 8.38855 * 7 2 1 9 9 N 1.36935 * 120.00078 * 188.39742 * 7 2 1 10 10 C 1.47429 * 125.64983 * 29.01536 * 9 7 2 11 11 C 1.55133 * 104.72084 * 155.82406 * 10 9 7 12 12 C 1.55155 * 101.48693 * 37.29784 * 11 10 9 13 13 C 1.47024 * 125.64590 * 209.33232 * 9 7 2 14 14 H 1.08996 * 109.88213 * 300.43146 * 13 9 7 15 15 C 1.53000 * 109.88134 * 61.44899 * 13 9 7 16 16 N 1.46498 * 109.46970 * 300.63679 * 15 13 9 17 17 C 1.34775 * 120.00301 * 173.92669 * 16 15 13 18 18 O 1.21284 * 119.99814 * 0.02562 * 17 16 15 19 19 C 1.50697 * 120.00483 * 179.97438 * 17 16 15 20 20 C 1.53242 * 109.62260 * 299.07763 * 19 17 16 21 21 C 1.50582 * 109.17099 * 184.67851 * 20 19 17 22 22 O 1.21233 * 119.35733 * 209.07611 * 21 20 19 23 23 N 1.34137 * 121.28423 * 29.07466 * 21 20 19 24 24 C 1.34143 * 122.58630 * 359.45147 * 23 21 20 25 25 O 1.21230 * 119.36004 * 180.54262 * 24 23 21 26 26 C 1.50591 * 121.27964 * 0.57677 * 24 23 21 27 27 H 0.96999 * 120.00086 * 184.86630 * 1 2 3 28 28 H 1.09000 * 110.36570 * 274.75493 * 10 9 7 29 29 H 1.09000 * 110.36467 * 37.07945 * 10 9 7 30 30 H 1.08998 * 111.19246 * 279.19410 * 11 10 9 31 31 H 1.09000 * 110.90617 * 155.27832 * 11 10 9 32 32 H 1.09002 * 110.71986 * 205.97110 * 12 11 10 33 33 H 1.08994 * 110.87495 * 82.76433 * 12 11 10 34 34 H 1.08993 * 109.47822 * 60.64063 * 15 13 9 35 35 H 1.09003 * 109.46885 * 180.63952 * 15 13 9 36 36 H 0.97001 * 120.00224 * 353.92103 * 16 15 13 37 37 H 1.09001 * 109.61995 * 59.63068 * 19 17 16 38 38 H 1.08998 * 109.51936 * 304.56627 * 20 19 17 39 39 H 1.08999 * 109.52055 * 64.75240 * 20 19 17 40 40 H 0.96999 * 118.71162 * 179.43648 * 23 21 20 41 41 H 1.08996 * 109.51864 * 210.97307 * 26 24 23 42 42 H 1.08994 * 109.57605 * 90.81560 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2905 2.7434 -0.1321 5 1 3.2003 1.6408 -1.1410 6 1 3.0021 1.7552 1.2732 7 6 2.0103 -1.2021 0.0005 8 1 1.4790 -2.1325 -0.1355 9 7 3.3686 -1.2083 0.1737 10 6 4.1426 -0.2096 0.9333 11 6 5.4385 -0.9516 1.3536 12 6 5.7151 -1.8241 0.1008 13 6 4.2974 -2.2086 -0.3725 14 1 4.0376 -3.1989 0.0014 15 6 4.2347 -2.1968 -1.9012 16 7 2.8688 -2.4987 -2.3362 17 6 2.5452 -2.4232 -3.6424 18 8 3.3851 -2.1056 -4.4577 19 6 1.1403 -2.7343 -4.0900 20 6 0.7931 -4.1819 -3.7265 21 6 -0.5669 -4.5179 -4.2788 22 8 -1.2524 -5.3408 -3.7107 23 7 -1.0347 -3.9243 -5.3870 24 6 -0.3361 -2.9979 -6.0601 25 8 -0.8197 -2.4918 -7.0499 26 6 1.0375 -2.5749 -5.6106 27 1 -0.4850 -0.8370 0.0713 28 1 4.3806 0.6463 0.3017 29 1 3.5868 0.1109 1.8144 30 1 5.2692 -1.5731 2.2329 31 1 6.2518 -0.2467 1.5261 32 1 6.2866 -2.7129 0.3684 33 1 6.2349 -1.2494 -0.6657 34 1 4.5240 -1.2125 -2.2692 35 1 4.9171 -2.9482 -2.2986 36 1 2.1972 -2.7532 -1.6842 37 1 0.4418 -2.0541 -3.6026 38 1 1.5364 -4.8536 -4.1559 39 1 0.7838 -4.2930 -2.6422 40 1 -1.9126 -4.1750 -5.7147 41 1 1.2036 -1.5318 -5.8797 42 1 1.7884 -3.1998 -6.0940 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028201267.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:44 Heat of formation + Delta-G solvation = -115.251915 kcal Electronic energy + Delta-G solvation = -26622.935036 eV Core-core repulsion = 22795.247364 eV Total energy + Delta-G solvation = -3827.687673 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.152 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.69431 -40.78573 -40.02734 -39.44234 -36.61522 -35.47809 -34.91466 -34.72203 -31.61163 -30.95980 -29.88391 -27.09820 -25.87746 -24.72816 -24.29378 -22.59252 -21.38169 -20.80276 -20.41900 -19.55057 -18.94944 -18.45453 -18.05321 -17.30135 -17.01949 -16.75869 -16.63188 -16.28192 -15.80438 -15.52850 -15.39888 -15.36521 -15.02997 -14.99089 -14.48295 -14.06979 -13.80244 -13.49003 -13.27693 -12.93123 -12.71181 -12.62795 -12.56795 -12.35802 -12.11515 -12.04567 -11.95773 -11.46444 -11.45996 -11.43487 -11.24451 -11.15510 -10.77390 -10.66206 -9.87541 -8.92721 -8.47256 -5.48986 0.31942 1.43547 1.51529 1.54390 1.60729 1.67500 1.69833 2.29202 2.56755 2.82448 3.22785 3.28153 3.34090 3.43126 3.56028 3.86135 3.91779 4.04264 4.08512 4.22010 4.31458 4.36212 4.47500 4.51311 4.69208 4.73226 4.79240 4.79726 4.86554 4.93600 5.05898 5.08124 5.19178 5.31504 5.52117 5.60328 5.66250 5.76634 6.18286 6.27173 6.64014 6.67347 6.88639 7.26090 7.51858 8.25151 8.98787 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.015756 B = 0.004555 C = 0.004203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.633762 B = 6145.652940 C = 6660.467169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.963 5.963 2 C -0.058 4.058 3 Si 1.087 2.913 4 H -0.322 1.322 5 H -0.292 1.292 6 H -0.257 1.257 7 C -0.286 4.286 8 H 0.060 0.940 9 N -0.622 5.622 10 C 0.095 3.905 11 C -0.119 4.119 12 C -0.115 4.115 13 C 0.139 3.861 14 H 0.054 0.946 15 C 0.117 3.883 16 N -0.698 5.698 17 C 0.521 3.479 18 O -0.578 6.578 19 C -0.106 4.106 20 C -0.125 4.125 21 C 0.542 3.458 22 O -0.530 6.530 23 N -0.668 5.668 24 C 0.542 3.458 25 O -0.532 6.532 26 C -0.114 4.114 27 H 0.253 0.747 28 H 0.017 0.983 29 H 0.041 0.959 30 H 0.076 0.924 31 H 0.092 0.908 32 H 0.102 0.898 33 H 0.076 0.924 34 H 0.039 0.961 35 H 0.079 0.921 36 H 0.409 0.591 37 H 0.105 0.895 38 H 0.147 0.853 39 H 0.123 0.877 40 H 0.417 0.583 41 H 0.115 0.885 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.274 -8.891 -4.510 13.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.607 5.607 2 C -0.253 4.253 3 Si 0.917 3.083 4 H -0.251 1.251 5 H -0.220 1.220 6 H -0.182 1.182 7 C -0.416 4.416 8 H 0.077 0.923 9 N -0.349 5.349 10 C -0.030 4.030 11 C -0.158 4.158 12 C -0.153 4.153 13 C 0.033 3.967 14 H 0.071 0.929 15 C -0.009 4.009 16 N -0.349 5.349 17 C 0.307 3.693 18 O -0.459 6.459 19 C -0.128 4.128 20 C -0.165 4.165 21 C 0.332 3.668 22 O -0.404 6.404 23 N -0.333 5.333 24 C 0.332 3.668 25 O -0.406 6.406 26 C -0.154 4.154 27 H 0.062 0.938 28 H 0.034 0.966 29 H 0.059 0.941 30 H 0.095 0.905 31 H 0.110 0.890 32 H 0.120 0.880 33 H 0.094 0.906 34 H 0.057 0.943 35 H 0.097 0.903 36 H 0.247 0.753 37 H 0.123 0.877 38 H 0.164 0.836 39 H 0.141 0.859 40 H 0.258 0.742 41 H 0.133 0.867 42 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 9.219 -7.161 -5.233 12.793 hybrid contribution -1.326 -1.420 0.205 1.954 sum 7.893 -8.582 -5.028 12.697 Atomic orbital electron populations 1.70999 1.06994 1.29030 1.53670 1.26809 0.96447 1.03633 0.98435 0.83582 0.73034 0.73752 0.77888 1.25109 1.21957 1.18209 1.19775 0.81600 0.93241 1.46947 0.92273 1.45016 1.02246 1.29126 1.58485 1.22320 0.93805 0.92736 0.94109 1.22727 0.96027 0.98969 0.98030 1.22554 0.94201 1.01077 0.97488 1.21554 0.91371 0.93552 0.90257 0.92865 1.21908 0.82810 0.99690 0.96473 1.46154 1.13863 1.67303 1.07602 1.20249 0.89326 0.77135 0.82631 1.90663 1.51645 1.50075 1.53495 1.21376 0.95892 0.98601 0.96889 1.21941 0.93402 0.95866 1.05244 1.20934 0.88936 0.78606 0.78336 1.90803 1.58975 1.32813 1.57820 1.44774 1.22667 1.38908 1.26905 1.21013 0.87780 0.76441 0.81577 1.90784 1.70390 1.53155 1.26310 1.21720 0.92556 1.06840 0.94250 0.93758 0.96579 0.94063 0.90533 0.88961 0.87996 0.90558 0.94264 0.90303 0.75259 0.87712 0.83553 0.85881 0.74238 0.86713 0.84204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -56.28 13.70 21.65 0.30 -55.98 16 2 C -0.06 -3.07 5.50 84.86 0.47 -2.61 16 3 Si 1.09 51.33 24.71 68.60 1.69 53.03 16 4 H -0.32 -16.23 7.11 99.48 0.71 -15.52 16 5 H -0.29 -13.60 7.05 99.48 0.70 -12.90 16 6 H -0.26 -10.80 5.58 99.48 0.56 -10.24 16 7 C -0.29 -13.68 8.49 84.03 0.71 -12.96 16 8 H 0.06 2.91 6.79 -2.91 -0.02 2.89 16 9 N -0.62 -24.91 2.87 -667.80 -1.91 -26.83 16 10 C 0.09 3.48 4.52 86.93 0.39 3.87 16 11 C -0.12 -3.04 7.10 32.06 0.23 -2.81 16 12 C -0.11 -2.66 6.48 31.79 0.21 -2.45 16 13 C 0.14 4.25 3.37 45.34 0.15 4.40 16 14 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 15 C 0.12 3.61 5.22 86.38 0.45 4.06 16 16 N -0.70 -22.10 4.72 -463.07 -2.18 -24.29 16 17 C 0.52 15.82 7.16 87.66 0.63 16.45 16 18 O -0.58 -20.34 15.93 -3.04 -0.05 -20.39 16 19 C -0.11 -2.56 2.66 -11.38 -0.03 -2.59 16 20 C -0.12 -2.42 5.24 29.89 0.16 -2.26 16 21 C 0.54 12.27 7.74 87.72 0.68 12.95 16 22 O -0.53 -15.45 17.88 -2.89 -0.05 -15.50 16 23 N -0.67 -14.13 5.09 -428.63 -2.18 -16.31 16 24 C 0.54 12.72 7.74 87.72 0.68 13.40 16 25 O -0.53 -15.92 17.88 -2.88 -0.05 -15.97 16 26 C -0.11 -2.50 4.70 29.90 0.14 -2.36 16 27 H 0.25 14.63 8.73 -92.71 -0.81 13.82 16 28 H 0.02 0.64 5.44 -2.39 -0.01 0.63 16 29 H 0.04 1.65 6.61 -2.39 -0.02 1.64 16 30 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.09 1.89 8.14 -2.39 -0.02 1.88 16 32 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.08 1.69 7.84 -2.39 -0.02 1.67 16 34 H 0.04 1.42 8.10 -2.39 -0.02 1.40 16 35 H 0.08 2.04 8.14 -2.39 -0.02 2.03 16 36 H 0.41 13.41 5.40 -92.71 -0.50 12.91 16 37 H 0.10 2.88 8.14 -2.39 -0.02 2.86 16 38 H 0.15 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.12 2.43 7.77 -2.39 -0.02 2.41 16 40 H 0.42 8.05 8.79 -92.71 -0.81 7.24 16 41 H 0.11 2.78 8.14 -2.39 -0.02 2.76 16 42 H 0.14 2.56 7.98 -2.39 -0.02 2.55 16 Total: -1.00 -70.04 337.02 -0.02 -70.06 By element: Atomic # 1 Polarization: 25.53 SS G_CDS: -0.44 Total: 25.09 kcal Atomic # 6 Polarization: 22.22 SS G_CDS: 4.86 Total: 27.09 kcal Atomic # 7 Polarization: -117.42 SS G_CDS: -5.99 Total: -123.41 kcal Atomic # 8 Polarization: -51.70 SS G_CDS: -0.15 Total: -51.85 kcal Atomic # 14 Polarization: 51.33 SS G_CDS: 1.69 Total: 53.03 kcal Total: -70.04 -0.02 -70.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028201267.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.193 kcal (2) G-P(sol) polarization free energy of solvation -70.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds