Wall clock time and date at job start Fri Apr 10 2020 17:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 110.66071 * 2 1 4 4 C 1.54229 * 110.60622 * 122.93366 * 2 1 3 5 5 C 1.51317 * 103.55575 * 118.51675 * 4 2 1 6 6 O 1.21227 * 125.39976 * 180.02562 * 5 4 2 7 7 N 1.33883 * 109.20616 * 0.02562 * 5 4 2 8 8 C 1.46499 * 122.76235 * 180.02562 * 7 5 4 9 9 C 1.50700 * 109.47257 * 90.01840 * 8 7 5 10 10 O 1.21283 * 119.99803 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99675 * 180.27849 * 9 8 7 12 12 C 1.46497 * 119.99525 * 179.72583 * 11 9 8 13 13 C 1.53943 * 113.74545 * 253.73622 * 12 11 9 14 14 N 1.47805 * 86.04196 * 222.08775 * 13 12 11 15 15 C 1.36937 * 134.45932 * 204.64391 * 14 13 12 16 16 H 1.07996 * 120.00038 * 179.86479 * 15 14 13 17 17 C 1.38814 * 119.99641 * 359.86435 * 15 14 13 18 18 N 1.31612 * 119.99975 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99771 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47202 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47099 * 119.99943 * 19 17 15 22 22 H 1.48502 * 109.47161 * 239.99852 * 19 17 15 23 23 C 1.47581 * 91.04978 * 24.54667 * 14 13 12 24 24 C 1.33879 * 114.47357 * 0.26526 * 7 5 4 25 25 O 1.21227 * 125.39234 * 179.71882 * 24 7 5 26 26 H 1.08999 * 109.47368 * 297.06596 * 1 2 3 27 27 H 1.09000 * 109.46921 * 57.06736 * 1 2 3 28 28 H 1.09003 * 109.47291 * 177.06296 * 1 2 3 29 29 H 1.09009 * 109.46804 * 182.93340 * 3 2 1 30 30 H 1.08994 * 109.47123 * 302.93078 * 3 2 1 31 31 H 1.09002 * 109.46862 * 62.93700 * 3 2 1 32 32 H 1.08996 * 110.60355 * 359.97438 * 4 2 1 33 33 H 1.08997 * 110.73983 * 237.09843 * 4 2 1 34 34 H 1.09009 * 109.46700 * 330.01734 * 8 7 5 35 35 H 1.08998 * 109.46827 * 210.02308 * 8 7 5 36 36 H 0.97000 * 119.99894 * 359.71837 * 11 9 8 37 37 H 1.08998 * 112.95115 * 25.33257 * 12 11 9 38 38 H 1.09002 * 113.76511 * 336.35431 * 13 12 11 39 39 H 1.08999 * 113.76958 * 107.74087 * 13 12 11 40 40 H 0.96999 * 119.99915 * 180.02562 * 18 17 15 41 41 H 1.09006 * 113.76919 * 221.15223 * 23 14 13 42 42 H 1.09005 * 113.77305 * 89.75704 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0698 1.4316 0.0000 4 6 2.0728 -0.7848 1.2116 5 6 2.8549 -1.9158 0.5801 6 8 3.4522 -2.7801 1.1850 7 7 2.7829 -1.8107 -0.7527 8 6 3.4373 -2.7575 -1.6591 9 6 2.4924 -3.8893 -1.9708 10 8 1.3819 -3.9040 -1.4834 11 7 2.8837 -4.8885 -2.7864 12 6 1.9673 -5.9918 -3.0846 13 6 2.3304 -7.3085 -2.3744 14 7 2.0082 -7.9696 -3.6564 15 6 1.6083 -9.2303 -4.0115 16 1 1.4308 -9.4681 -5.0499 17 6 1.4312 -10.2026 -3.0367 18 7 1.6481 -9.9129 -1.7713 19 14 0.8865 -11.9225 -3.5211 20 1 0.7121 -11.9900 -4.9943 21 1 1.9164 -12.9053 -3.0986 22 1 -0.4026 -12.2393 -2.8555 23 6 2.2878 -6.7256 -4.3995 24 6 2.0679 -0.7662 -1.1888 25 8 1.8788 -0.4814 -2.3518 26 1 -0.3634 0.4676 0.9151 27 1 -0.3633 0.5587 -0.8625 28 1 -0.3634 -1.0263 -0.0527 29 1 3.1584 1.4094 -0.0526 30 1 1.6753 1.9687 -0.8625 31 1 1.7605 1.9365 0.9152 32 1 1.2528 -1.1749 1.8146 33 1 2.7269 -0.1570 1.8166 34 1 4.3350 -3.1537 -1.1843 35 1 3.7099 -2.2469 -2.5827 36 1 3.7719 -4.8769 -3.1759 37 1 0.9186 -5.7129 -2.9822 38 1 3.3814 -7.3812 -2.0945 39 1 1.6534 -7.5702 -1.5612 40 1 1.5247 -10.5924 -1.0902 41 1 1.5766 -6.5229 -5.2004 42 1 3.3262 -6.6267 -4.7159 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030313905.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:53 Heat of formation + Delta-G solvation = -40.541395 kcal Electronic energy + Delta-G solvation = -25799.930554 eV Core-core repulsion = 21975.482573 eV Total energy + Delta-G solvation = -3824.447981 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.152 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.36868 -39.50920 -38.79827 -37.58488 -36.40597 -35.28967 -33.61032 -31.89391 -30.10846 -27.99497 -27.86574 -26.99880 -24.85173 -24.50594 -23.19237 -21.65628 -20.54681 -19.76197 -19.29973 -17.60296 -17.37948 -16.79211 -16.51920 -16.18626 -15.72057 -15.24876 -15.07266 -14.70041 -14.55835 -14.43997 -14.07652 -14.01243 -13.81749 -13.48168 -12.88777 -12.81008 -12.64478 -12.34604 -12.12945 -11.97153 -11.87085 -11.51998 -11.48092 -11.45833 -10.90720 -10.81442 -10.63963 -10.49306 -10.45271 -10.15096 -10.03130 -9.57927 -9.41938 -8.83084 -8.51979 -6.93962 -5.78526 -3.12932 1.34315 2.11288 2.52271 2.73366 3.37681 3.41609 3.46290 3.47241 3.66492 3.89634 4.00972 4.32717 4.43931 4.64620 4.76631 4.82079 4.98135 5.04625 5.10499 5.12580 5.20670 5.22043 5.28791 5.39524 5.46354 5.48332 5.54534 5.64967 5.82314 5.97364 6.17437 6.37211 6.52156 6.57118 6.68778 7.11399 7.21872 7.31434 7.51631 7.56385 7.76504 7.94735 8.39029 9.01234 9.67636 10.53583 11.38161 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.028629 B = 0.002825 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.803985 B = 9908.042353 C =10162.463747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.096 4.096 3 C -0.133 4.133 4 C -0.150 4.150 5 C 0.532 3.468 6 O -0.475 6.475 7 N -0.556 5.556 8 C 0.076 3.924 9 C 0.500 3.500 10 O -0.534 6.534 11 N -0.709 5.709 12 C 0.092 3.908 13 C 0.155 3.845 14 N -0.607 5.607 15 C -0.226 4.226 16 H 0.083 0.917 17 C -0.007 4.007 18 N -0.917 5.917 19 Si 0.915 3.085 20 H -0.279 1.279 21 H -0.290 1.290 22 H -0.289 1.289 23 C 0.114 3.886 24 C 0.540 3.460 25 O -0.475 6.475 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.124 0.876 33 H 0.122 0.878 34 H 0.123 0.877 35 H 0.122 0.878 36 H 0.398 0.602 37 H 0.110 0.890 38 H 0.030 0.970 39 H 0.077 0.923 40 H 0.254 0.746 41 H 0.050 0.950 42 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.772 24.951 4.643 25.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.099 4.099 3 C -0.190 4.190 4 C -0.189 4.189 5 C 0.321 3.679 6 O -0.346 6.346 7 N -0.299 5.299 8 C -0.050 4.050 9 C 0.284 3.716 10 O -0.411 6.411 11 N -0.360 5.360 12 C -0.013 4.013 13 C 0.028 3.972 14 N -0.334 5.334 15 C -0.354 4.354 16 H 0.100 0.900 17 C -0.204 4.204 18 N -0.564 5.564 19 Si 0.745 3.255 20 H -0.204 1.204 21 H -0.217 1.217 22 H -0.216 1.216 23 C -0.013 4.013 24 C 0.328 3.672 25 O -0.346 6.346 26 H 0.095 0.905 27 H 0.091 0.909 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.095 0.905 32 H 0.142 0.858 33 H 0.140 0.860 34 H 0.141 0.859 35 H 0.140 0.860 36 H 0.232 0.768 37 H 0.128 0.872 38 H 0.047 0.953 39 H 0.095 0.905 40 H 0.065 0.935 41 H 0.068 0.932 42 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 3.095 24.240 4.721 24.889 hybrid contribution 0.393 -1.247 -0.493 1.397 sum 3.488 22.993 4.228 23.637 Atomic orbital electron populations 1.21774 0.90070 1.03784 1.03569 1.21465 0.99187 0.97106 0.92132 1.21776 1.01173 0.92221 1.03837 1.22704 1.01969 0.95863 0.98375 1.20789 0.79552 0.86131 0.81473 1.90806 1.41175 1.36331 1.66271 1.46311 1.48100 1.26310 1.09131 1.21649 0.96495 0.90471 0.96344 1.20581 0.88295 0.83288 0.79452 1.90713 1.21343 1.77805 1.51223 1.46050 1.18435 1.23201 1.48328 1.23963 0.94588 0.84588 0.98158 1.22706 0.98102 0.84732 0.91615 1.45722 1.77683 1.07128 1.02825 1.19028 1.38524 0.84712 0.93088 0.89956 1.24836 1.01773 0.98410 0.95340 1.69840 1.54118 1.33243 0.99191 0.86011 0.77945 0.83964 0.77600 1.20391 1.21678 1.21595 1.22867 0.97868 0.86685 0.93918 1.20733 0.76162 0.79720 0.90558 1.90747 1.55655 1.69010 1.19154 0.90523 0.90942 0.91290 0.91954 0.90850 0.90483 0.85798 0.86007 0.85858 0.86021 0.76790 0.87200 0.95262 0.90499 0.93541 0.93174 0.94616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.98 8.46 37.16 0.31 -0.66 16 2 C -0.10 -0.73 1.05 -154.71 -0.16 -0.90 16 3 C -0.13 -0.68 8.44 37.16 0.31 -0.36 16 4 C -0.15 -1.08 6.31 -26.94 -0.17 -1.25 16 5 C 0.53 6.34 8.08 -11.08 -0.09 6.25 16 6 O -0.48 -7.30 17.48 5.60 0.10 -7.20 16 7 N -0.56 -6.75 2.04 -116.62 -0.24 -6.99 16 8 C 0.08 0.89 6.04 -5.19 -0.03 0.86 16 9 C 0.50 8.11 7.90 -10.98 -0.09 8.03 16 10 O -0.53 -10.91 16.05 5.55 0.09 -10.82 16 11 N -0.71 -11.05 5.37 -55.34 -0.30 -11.35 16 12 C 0.09 1.83 4.40 -70.14 -0.31 1.52 16 13 C 0.15 3.79 7.32 -2.84 -0.02 3.77 16 14 N -0.61 -15.82 3.70 -177.87 -0.66 -16.48 16 15 C -0.23 -6.43 10.70 -15.06 -0.16 -6.59 16 16 H 0.08 2.24 7.83 -52.49 -0.41 1.83 16 17 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 18 N -0.92 -27.87 11.39 55.49 0.63 -27.24 16 19 Si 0.91 22.42 29.55 -169.99 -5.02 17.40 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 23 C 0.11 2.29 8.69 -2.97 -0.03 2.27 16 24 C 0.54 6.29 6.74 -11.08 -0.07 6.22 16 25 O -0.48 -6.81 17.47 5.60 0.10 -6.71 16 26 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.30 8.14 -51.92 -0.42 -0.13 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.12 0.78 7.74 -51.93 -0.40 0.38 16 33 H 0.12 0.53 7.75 -51.93 -0.40 0.13 16 34 H 0.12 1.23 7.83 -51.92 -0.41 0.82 16 35 H 0.12 1.14 7.82 -51.93 -0.41 0.73 16 36 H 0.40 4.78 8.71 -40.82 -0.36 4.42 16 37 H 0.11 2.40 7.51 -51.93 -0.39 2.01 16 38 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.08 2.15 7.17 -51.93 -0.37 1.78 16 40 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 41 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 42 H 0.04 0.66 8.11 -51.93 -0.42 0.23 16 LS Contribution 357.92 15.07 5.39 5.39 Total: -1.00 -37.91 357.92 -6.59 -44.50 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -6.08 Total: 0.64 kcal Atomic # 6 Polarization: 19.46 SS G_CDS: -0.60 Total: 18.86 kcal Atomic # 7 Polarization: -61.49 SS G_CDS: -0.56 Total: -62.05 kcal Atomic # 8 Polarization: -25.02 SS G_CDS: 0.29 Total: -24.74 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -37.91 -6.59 -44.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030313905.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.956 kcal (2) G-P(sol) polarization free energy of solvation -37.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds