Wall clock time and date at job start Fri Apr 10 2020 18:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86807 * 120.00141 * 2 1 4 4 H 1.48496 * 109.47032 * 89.99606 * 3 2 1 5 5 H 1.48495 * 109.47159 * 210.00119 * 3 2 1 6 6 H 1.48498 * 109.46775 * 330.00052 * 3 2 1 7 7 C 1.38812 * 120.00351 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99773 * 24.42433 * 7 2 1 9 9 N 1.36932 * 120.00302 * 204.41964 * 7 2 1 10 10 C 1.47535 * 125.67291 * 12.90823 * 9 7 2 11 11 C 1.55363 * 104.86326 * 156.01666 * 10 9 7 12 12 C 1.53909 * 101.35316 * 36.05492 * 11 10 9 13 13 C 1.53392 * 111.11293 * 86.13184 * 12 11 10 14 14 C 1.55215 * 102.50642 * 100.35216 * 13 12 11 15 15 N 1.48235 * 103.42784 * 36.33647 * 14 13 12 16 16 C 1.34776 * 127.00619 * 141.47281 * 15 14 13 17 17 O 1.21290 * 119.99908 * 179.97438 * 16 15 14 18 18 C 1.50695 * 120.00096 * 359.97438 * 16 15 14 19 19 H 1.08996 * 110.50870 * 317.26136 * 18 16 15 20 20 C 1.54096 * 110.56298 * 80.00130 * 18 16 15 21 21 O 1.45703 * 104.00758 * 118.56929 * 20 18 16 22 22 C 1.33771 * 109.48034 * 0.02562 * 21 20 18 23 23 O 1.21510 * 123.07660 * 180.02562 * 22 21 20 24 24 N 1.34006 * 113.85505 * 359.97438 * 22 21 20 25 25 C 1.47841 * 105.98604 * 321.45563 * 15 14 13 26 26 C 1.47346 * 125.67237 * 193.21304 * 9 7 2 27 27 H 0.96998 * 119.99854 * 174.58626 * 1 2 3 28 28 H 1.09002 * 110.34090 * 274.99319 * 10 9 7 29 29 H 1.09010 * 110.33795 * 37.23794 * 10 9 7 30 30 H 1.09007 * 111.22932 * 277.97877 * 11 10 9 31 31 H 1.09001 * 110.96015 * 154.01233 * 11 10 9 32 32 H 1.09005 * 110.79759 * 218.60626 * 13 12 11 33 33 H 1.08993 * 110.80047 * 342.09305 * 13 12 11 34 34 H 1.09000 * 110.62948 * 277.85380 * 14 13 12 35 35 H 1.09002 * 110.77142 * 154.88894 * 14 13 12 36 36 H 1.08991 * 110.52166 * 237.20435 * 20 18 16 37 37 H 1.08998 * 110.52062 * 359.94134 * 20 18 16 38 38 H 0.96995 * 125.56063 * 180.02562 * 24 22 21 39 39 H 1.09000 * 110.03430 * 265.88367 * 25 15 14 40 40 H 1.09005 * 110.03453 * 144.44640 * 25 15 14 41 41 H 1.09004 * 109.97090 * 301.28391 * 26 9 7 42 42 H 1.08998 * 109.97258 * 62.54210 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0465 1.4000 5 1 3.5478 1.4402 -0.7000 6 1 1.4477 2.6527 -0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.5428 -2.0957 -0.3858 9 7 3.2878 -1.2549 0.4908 10 6 3.9493 -0.2011 1.2836 11 6 5.0542 -0.9412 2.0869 12 6 5.5086 -2.0030 1.0696 13 6 6.5852 -1.4439 0.1309 14 6 7.8931 -2.0138 0.7424 15 7 7.4943 -3.3616 1.2132 16 6 8.2260 -4.4918 1.1520 17 8 7.7716 -5.5323 1.5786 18 6 9.6086 -4.4627 0.5533 19 1 9.6189 -3.8601 -0.3549 20 6 10.6289 -3.9215 1.5735 21 8 11.5589 -5.0270 1.7626 22 6 11.1842 -6.0605 1.0004 23 8 11.7885 -7.1142 0.9682 24 7 10.0809 -5.8280 0.2762 25 6 6.1304 -3.2133 1.7642 26 6 4.2325 -2.3709 0.3089 27 1 -0.4850 -0.8363 -0.0793 28 1 4.3921 0.5465 0.6255 29 1 3.2361 0.2659 1.9630 30 1 4.6452 -1.4078 2.9831 31 1 5.8718 -0.2657 2.3387 32 1 6.4411 -1.8108 -0.8854 33 1 6.5902 -0.3542 0.1531 34 1 8.2265 -1.3982 1.5779 35 1 8.6739 -2.0870 -0.0147 36 1 11.1467 -3.0510 1.1709 37 1 10.1349 -3.6729 2.5127 38 1 9.6619 -6.4573 -0.3314 39 1 6.1786 -3.0427 2.8397 40 1 5.5432 -4.1072 1.5534 41 1 3.8077 -3.2885 0.7162 42 1 4.4549 -2.5016 -0.7501 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041250144.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:00:21 Heat of formation + Delta-G solvation = -91.703454 kcal Electronic energy + Delta-G solvation = -26198.812756 eV Core-core repulsion = 22372.146222 eV Total energy + Delta-G solvation = -3826.666535 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.152 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.92240 -41.40617 -39.86319 -38.37317 -37.39112 -35.79073 -34.72595 -32.69615 -31.02756 -30.52816 -30.16246 -27.58435 -25.82303 -24.40678 -24.08284 -23.55741 -22.48355 -20.81517 -20.34621 -19.43432 -19.27129 -18.76008 -17.98965 -17.53938 -17.07733 -16.81864 -16.49740 -16.01570 -15.62846 -15.51433 -15.29447 -15.19257 -14.96749 -14.79803 -14.47209 -14.25644 -13.98995 -13.40583 -13.35890 -13.22888 -12.92849 -12.87647 -12.61371 -12.23692 -12.06101 -11.94509 -11.91833 -11.63371 -11.54558 -11.51900 -11.24428 -11.14167 -10.65390 -10.40524 -9.82148 -9.13044 -8.63337 -5.44676 1.23429 1.34083 1.42295 1.57028 1.59593 1.73472 1.81515 2.52833 2.56498 3.02949 3.06802 3.15845 3.33733 3.52448 3.58701 3.70815 3.78133 3.98761 4.08323 4.24023 4.39644 4.40945 4.45488 4.49857 4.66527 4.70081 4.74142 4.78492 4.83640 4.89922 4.99607 5.08484 5.17610 5.24827 5.34620 5.43996 5.57527 5.60491 6.05527 6.11157 6.40580 6.83182 6.84638 6.94437 7.48968 8.14127 8.84299 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.039271 B = 0.002956 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.827782 B = 9469.560194 C = 9785.932471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.959 5.959 2 C -0.082 4.082 3 Si 1.112 2.888 4 H -0.268 1.268 5 H -0.253 1.253 6 H -0.311 1.311 7 C -0.321 4.321 8 H 0.030 0.970 9 N -0.630 5.630 10 C 0.093 3.907 11 C -0.103 4.103 12 C -0.073 4.073 13 C -0.119 4.119 14 C 0.097 3.903 15 N -0.609 5.609 16 C 0.516 3.484 17 O -0.580 6.580 18 C 0.087 3.913 19 H 0.178 0.822 20 C 0.052 3.948 21 O -0.337 6.337 22 C 0.650 3.350 23 O -0.571 6.571 24 N -0.705 5.705 25 C 0.127 3.873 26 C 0.145 3.855 27 H 0.245 0.755 28 H 0.047 0.953 29 H 0.037 0.963 30 H 0.068 0.932 31 H 0.122 0.878 32 H 0.069 0.931 33 H 0.104 0.896 34 H 0.116 0.884 35 H 0.125 0.875 36 H 0.176 0.824 37 H 0.117 0.883 38 H 0.443 0.557 39 H 0.086 0.914 40 H 0.049 0.951 41 H 0.006 0.994 42 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.141 1.702 1.689 26.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.275 4.275 3 Si 0.936 3.064 4 H -0.193 1.193 5 H -0.178 1.178 6 H -0.240 1.240 7 C -0.450 4.450 8 H 0.048 0.952 9 N -0.358 5.358 10 C -0.031 4.031 11 C -0.141 4.141 12 C -0.075 4.075 13 C -0.157 4.157 14 C -0.024 4.024 15 N -0.342 5.342 16 C 0.303 3.697 17 O -0.459 6.459 18 C -0.022 4.022 19 H 0.195 0.805 20 C -0.022 4.022 21 O -0.247 6.247 22 C 0.403 3.597 23 O -0.460 6.460 24 N -0.376 5.376 25 C 0.004 3.996 26 C 0.020 3.980 27 H 0.054 0.946 28 H 0.065 0.935 29 H 0.056 0.944 30 H 0.087 0.913 31 H 0.140 0.860 32 H 0.088 0.912 33 H 0.122 0.878 34 H 0.134 0.866 35 H 0.143 0.857 36 H 0.193 0.807 37 H 0.135 0.865 38 H 0.287 0.713 39 H 0.104 0.896 40 H 0.067 0.933 41 H 0.024 0.976 42 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 26.298 2.260 2.206 26.487 hybrid contribution -1.879 -2.782 -0.635 3.417 sum 24.418 -0.522 1.571 24.474 Atomic orbital electron populations 1.71038 1.07309 1.28998 1.52966 1.27375 0.96301 1.04916 0.98884 0.83300 0.74111 0.71132 0.77811 1.19339 1.17808 1.23986 1.19882 0.89779 0.95044 1.40263 0.95164 1.44963 1.11053 1.18342 1.61403 1.22361 0.94799 0.92358 0.93559 1.22756 0.98059 0.97036 0.96210 1.21455 0.94242 0.95261 0.96518 1.22711 0.92596 1.02433 0.97952 1.23181 0.97336 0.80452 1.01410 1.48988 1.15984 1.09485 1.59695 1.20788 0.87589 0.82092 0.79227 1.90791 1.73067 1.32234 1.49825 1.22611 0.90802 0.85597 1.03219 0.80484 1.24816 0.87640 0.89073 1.00622 1.87272 1.51095 1.25005 1.61278 1.18538 0.80615 0.83302 0.77290 1.91048 1.60400 1.24804 1.69699 1.45727 1.27635 1.17281 1.46974 1.21827 0.82587 0.96878 0.98300 1.21410 0.89419 0.90218 0.96987 0.94627 0.93521 0.94431 0.91334 0.86020 0.91185 0.87800 0.86607 0.85654 0.80667 0.86455 0.71268 0.89588 0.93278 0.97566 0.95925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.58 13.70 21.65 0.30 -61.29 16 2 C -0.08 -4.80 5.42 84.86 0.46 -4.34 16 3 Si 1.11 50.41 24.69 68.60 1.69 52.10 16 4 H -0.27 -10.93 6.61 99.48 0.66 -10.28 16 5 H -0.25 -9.96 6.21 99.48 0.62 -9.34 16 6 H -0.31 -14.63 7.11 99.48 0.71 -13.92 16 7 C -0.32 -18.51 10.45 84.03 0.88 -17.63 16 8 H 0.03 1.94 8.06 -2.91 -0.02 1.92 16 9 N -0.63 -28.87 3.28 -692.43 -2.27 -31.14 16 10 C 0.09 3.36 4.61 86.99 0.40 3.76 16 11 C -0.10 -2.40 5.75 31.71 0.18 -2.21 16 12 C -0.07 -1.68 0.74 -51.80 -0.04 -1.72 16 13 C -0.12 -1.67 6.05 31.49 0.19 -1.48 16 14 C 0.10 0.47 6.96 86.81 0.60 1.07 16 15 N -0.61 -8.48 3.31 -809.99 -2.68 -11.16 16 16 C 0.52 8.71 7.02 87.66 0.62 9.33 16 17 O -0.58 -16.74 16.91 -3.06 -0.05 -16.79 16 18 C 0.09 0.70 3.49 44.50 0.16 0.85 16 19 H 0.18 -0.25 7.10 -2.39 -0.02 -0.27 16 20 C 0.05 0.25 7.87 72.35 0.57 0.82 16 21 O -0.34 -5.75 11.09 -47.31 -0.52 -6.27 16 22 C 0.65 14.52 9.16 129.91 1.19 15.71 16 23 O -0.57 -18.29 18.04 19.65 0.35 -17.94 16 24 N -0.70 -10.89 5.63 -573.40 -3.23 -14.12 16 25 C 0.13 2.67 6.31 86.05 0.54 3.21 16 26 C 0.14 5.31 6.45 86.24 0.56 5.86 16 27 H 0.24 15.95 8.73 -92.71 -0.81 15.14 16 28 H 0.05 1.57 5.55 -2.39 -0.01 1.56 16 29 H 0.04 1.52 6.25 -2.38 -0.01 1.51 16 30 H 0.07 1.68 7.92 -2.38 -0.02 1.66 16 31 H 0.12 1.69 7.94 -2.39 -0.02 1.67 16 32 H 0.07 1.16 7.49 -2.38 -0.02 1.14 16 33 H 0.10 1.24 7.77 -2.39 -0.02 1.22 16 34 H 0.12 -0.05 8.14 -2.39 -0.02 -0.07 16 35 H 0.13 -0.41 6.78 -2.39 -0.02 -0.43 16 36 H 0.18 -0.97 8.14 -2.39 -0.02 -0.99 16 37 H 0.12 0.46 7.72 -2.39 -0.02 0.44 16 38 H 0.44 6.44 8.96 -92.71 -0.83 5.61 16 39 H 0.09 1.63 7.61 -2.39 -0.02 1.61 16 40 H 0.05 1.37 7.29 -2.38 -0.02 1.35 16 41 H 0.01 0.25 7.46 -2.38 -0.02 0.24 16 42 H 0.02 0.85 7.43 -2.39 -0.02 0.83 16 Total: -1.00 -92.72 333.20 -0.05 -92.77 By element: Atomic # 1 Polarization: 0.55 SS G_CDS: 0.05 Total: 0.61 kcal Atomic # 6 Polarization: 6.93 SS G_CDS: 6.31 Total: 13.23 kcal Atomic # 7 Polarization: -109.82 SS G_CDS: -7.88 Total: -117.70 kcal Atomic # 8 Polarization: -40.78 SS G_CDS: -0.22 Total: -41.00 kcal Atomic # 14 Polarization: 50.41 SS G_CDS: 1.69 Total: 52.10 kcal Total: -92.72 -0.05 -92.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041250144.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.064 kcal (2) G-P(sol) polarization free energy of solvation -92.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds