Wall clock time and date at job start Fri Apr 10 2020 18:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35444 * 126.77930 * 2 1 4 4 C 1.41382 * 103.98622 * 180.02562 * 3 2 1 5 5 C 1.50701 * 126.80111 * 180.02562 * 4 3 2 6 6 C 1.50703 * 109.47064 * 124.99939 * 5 4 3 7 7 O 1.21278 * 119.99985 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00161 * 180.02562 * 6 5 4 9 9 C 1.46505 * 119.99832 * 359.97438 * 8 6 5 10 10 C 1.46496 * 120.00271 * 180.02562 * 8 6 5 11 11 H 1.08995 * 110.64158 * 3.13788 * 10 8 6 12 12 C 1.54319 * 110.72250 * 126.47378 * 10 8 6 13 13 N 1.47022 * 107.27423 * 140.55658 * 12 10 8 14 14 C 1.36932 * 125.65267 * 181.02845 * 13 12 10 15 15 H 1.08006 * 119.99923 * 0.02562 * 14 13 12 16 16 C 1.38816 * 120.00193 * 180.02562 * 14 13 12 17 17 N 1.31617 * 119.99779 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00058 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.47182 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47118 * 119.99870 * 18 16 14 21 21 H 1.48499 * 109.47282 * 239.99907 * 18 16 14 22 22 C 1.47433 * 108.69997 * 1.05789 * 13 12 10 23 23 C 1.54914 * 104.83194 * 335.87254 * 22 13 12 24 24 H 1.08994 * 111.00344 * 278.93611 * 23 22 13 25 25 O 1.42903 * 111.00001 * 155.08075 * 23 22 13 26 26 N 1.30169 * 106.39315 * 0.26052 * 4 3 2 27 27 O 1.20922 * 111.60682 * 359.54067 * 26 4 3 28 28 H 1.09000 * 109.47385 * 89.99530 * 1 2 3 29 29 H 1.08994 * 109.47375 * 209.99827 * 1 2 3 30 30 H 1.08998 * 109.46658 * 330.00153 * 1 2 3 31 31 H 1.08000 * 128.01108 * 0.05878 * 3 2 1 32 32 H 1.09002 * 109.47060 * 244.99903 * 5 4 3 33 33 H 1.09001 * 109.47380 * 4.99991 * 5 4 3 34 34 H 1.08999 * 109.47333 * 89.99805 * 9 8 6 35 35 H 1.08997 * 109.47024 * 210.00620 * 9 8 6 36 36 H 1.09000 * 109.46875 * 330.00379 * 9 8 6 37 37 H 1.09002 * 109.88474 * 259.97105 * 12 10 8 38 38 H 1.09001 * 109.88474 * 21.14054 * 12 10 8 39 39 H 0.97006 * 119.99839 * 180.02562 * 17 16 14 40 40 H 1.09003 * 110.36674 * 217.03333 * 22 13 12 41 41 H 1.09003 * 110.45502 * 94.75946 * 22 13 12 42 42 H 0.96702 * 113.99800 * 67.80862 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3180 1.0848 0.0000 4 6 3.6214 0.5371 -0.0006 5 6 4.9211 1.2998 -0.0003 6 6 5.7671 0.8504 1.1631 7 8 5.3549 -0.0046 1.9180 8 7 6.9812 1.3995 1.3653 9 6 7.4789 2.4328 0.4538 10 6 7.8038 0.9622 2.4960 11 1 7.3134 0.1535 3.0378 12 6 9.2061 0.5318 2.0168 13 7 10.1746 1.0135 3.0125 14 6 11.5330 0.8539 2.9469 15 1 11.9761 0.3359 2.1091 16 6 12.3407 1.3578 3.9572 17 7 11.8008 1.9894 4.9779 18 14 14.1938 1.1394 3.8681 19 1 14.5460 0.3996 2.6295 20 1 14.8491 2.4719 3.8526 21 1 14.6593 0.3725 5.0514 22 6 9.4409 1.6963 4.0937 23 6 8.1103 2.1515 3.4441 24 1 8.2462 3.0749 2.8812 25 8 7.0845 2.2999 4.4279 26 7 3.4763 -0.7564 -0.0066 27 8 2.3094 -1.0737 -0.0006 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3632 0.8900 0.5138 31 1 2.0346 2.1270 0.0009 32 1 5.4541 1.1098 -0.9320 33 1 4.7164 2.3666 0.0900 34 1 7.1760 3.4146 0.8174 35 1 8.5667 2.3824 0.4066 36 1 7.0642 2.2700 -0.5410 37 1 9.2565 -0.5548 1.9462 38 1 9.4195 0.9787 1.0458 39 1 12.3653 2.3419 5.6838 40 1 10.0046 2.5592 4.4485 41 1 9.2457 1.0075 4.9157 42 1 7.2326 3.0309 5.0434 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047327277.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:00:51 Heat of formation + Delta-G solvation = 18.314964 kcal Electronic energy + Delta-G solvation = -25829.521715 eV Core-core repulsion = 22007.625937 eV Total energy + Delta-G solvation = -3821.895778 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.152 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -44.97874 -39.94079 -37.85856 -35.23457 -34.76147 -34.70388 -33.52543 -31.99555 -29.86189 -28.33973 -27.95620 -27.21199 -26.54029 -24.38790 -23.19899 -21.51109 -20.47890 -19.78797 -18.68982 -17.83198 -17.41534 -17.13644 -17.06034 -16.30055 -15.77128 -15.53347 -14.92452 -14.54182 -14.03178 -13.91033 -13.76083 -13.53199 -13.36509 -13.11387 -13.05336 -12.86310 -12.54973 -12.39173 -12.23948 -12.16008 -11.68493 -11.49309 -11.22706 -11.15300 -10.94996 -10.86687 -10.26159 -10.17352 -9.95461 -9.73190 -9.65001 -9.40078 -9.23173 -8.74965 -8.34066 -6.95311 -5.74519 -3.18022 1.41248 2.11497 2.78227 3.01238 3.15617 3.35102 3.41014 3.43388 4.01619 4.25776 4.40007 4.60713 4.74292 4.82734 4.95938 5.00104 5.07537 5.10590 5.24782 5.31563 5.32665 5.38821 5.45215 5.53512 5.62372 5.65583 5.68416 5.81252 5.89338 5.91338 6.09445 6.17672 6.46074 6.61683 6.91159 7.33163 7.49438 7.57992 7.70725 8.15167 8.25577 8.26934 8.35626 9.10589 9.71107 10.33666 11.29183 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.034962 B = 0.002802 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.685535 B = 9990.254446 C =10215.603510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.041 4.041 3 C -0.228 4.228 4 C 0.029 3.971 5 C -0.060 4.060 6 C 0.516 3.484 7 O -0.524 6.524 8 N -0.601 5.601 9 C 0.069 3.931 10 C 0.137 3.863 11 H 0.111 0.889 12 C 0.130 3.870 13 N -0.599 5.599 14 C -0.224 4.224 15 H 0.081 0.919 16 C -0.010 4.010 17 N -0.922 5.922 18 Si 0.918 3.082 19 H -0.279 1.279 20 H -0.290 1.290 21 H -0.290 1.290 22 C 0.129 3.871 23 C 0.065 3.935 24 H 0.059 0.941 25 O -0.563 6.563 26 N -0.335 5.335 27 O 0.104 5.896 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.170 0.830 32 H 0.111 0.889 33 H 0.114 0.886 34 H 0.056 0.944 35 H 0.085 0.915 36 H 0.069 0.931 37 H 0.032 0.968 38 H 0.035 0.965 39 H 0.253 0.747 40 H 0.112 0.888 41 H 0.024 0.976 42 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.619 4.221 -11.954 23.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.104 4.104 3 C -0.250 4.250 4 C -0.131 4.131 5 C -0.100 4.100 6 C 0.302 3.698 7 O -0.399 6.399 8 N -0.334 5.334 9 C -0.074 4.074 10 C 0.034 3.966 11 H 0.129 0.871 12 C 0.003 3.997 13 N -0.327 5.327 14 C -0.352 4.352 15 H 0.099 0.901 16 C -0.206 4.206 17 N -0.571 5.571 18 Si 0.748 3.252 19 H -0.204 1.204 20 H -0.217 1.217 21 H -0.216 1.216 22 C 0.003 3.997 23 C 0.004 3.996 24 H 0.077 0.923 25 O -0.368 6.368 26 N -0.036 5.036 27 O 0.034 5.966 28 H 0.104 0.896 29 H 0.101 0.899 30 H 0.108 0.892 31 H 0.188 0.812 32 H 0.129 0.871 33 H 0.132 0.868 34 H 0.075 0.925 35 H 0.104 0.896 36 H 0.088 0.912 37 H 0.050 0.950 38 H 0.052 0.948 39 H 0.064 0.936 40 H 0.129 0.871 41 H 0.042 0.958 42 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -19.026 2.252 -11.767 22.484 hybrid contribution 0.990 1.291 0.308 1.656 sum -18.036 3.543 -11.459 21.660 Atomic orbital electron populations 1.20303 0.84175 1.04616 1.03865 1.24467 0.96379 0.86370 1.03224 1.22328 0.91113 1.00914 1.10636 1.22808 0.96037 0.90154 1.04074 1.20039 0.90349 1.00310 0.99329 1.20199 0.81488 0.82017 0.86105 1.90740 1.71100 1.31288 1.46820 1.47742 1.16906 1.39819 1.28982 1.21885 1.02114 0.90786 0.92629 1.22135 0.91446 0.97579 0.85484 0.87134 1.21558 0.87064 0.97419 0.93672 1.44288 1.01699 1.65280 1.21406 1.19136 0.79852 1.30690 1.05485 0.90125 1.24819 0.98526 1.00631 0.96611 1.69769 1.33152 1.42660 1.11499 0.85951 0.84521 0.77321 0.77405 1.20439 1.21664 1.21645 1.22559 0.87900 0.99330 0.89931 1.23722 0.89552 0.96663 0.89636 0.92294 1.86462 1.47613 1.56400 1.46277 1.73898 0.96259 1.16214 1.17241 1.84863 1.11388 1.33182 1.67147 0.89563 0.89860 0.89195 0.81240 0.87058 0.86776 0.92509 0.89623 0.91241 0.95016 0.94760 0.93617 0.87087 0.95752 0.77999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.37 10.45 36.01 0.38 0.01 16 2 C -0.04 -0.41 7.49 -35.30 -0.26 -0.67 16 3 C -0.23 -2.36 11.05 -39.38 -0.44 -2.79 16 4 C 0.03 0.39 6.10 -82.10 -0.50 -0.11 16 5 C -0.06 -0.70 4.85 -29.03 -0.14 -0.84 16 6 C 0.52 8.63 7.67 -10.98 -0.08 8.54 16 7 O -0.52 -11.26 14.98 5.56 0.08 -11.18 16 8 N -0.60 -9.71 2.89 -171.84 -0.50 -10.21 16 9 C 0.07 0.81 9.10 59.85 0.54 1.36 16 10 C 0.14 2.73 3.10 -66.10 -0.20 2.52 16 11 H 0.11 2.53 7.00 -51.93 -0.36 2.17 16 12 C 0.13 2.78 6.80 -3.07 -0.02 2.75 16 13 N -0.60 -15.24 3.39 -170.06 -0.58 -15.82 16 14 C -0.22 -6.13 10.27 -15.06 -0.15 -6.28 16 15 H 0.08 2.13 7.83 -52.48 -0.41 1.72 16 16 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16 17 N -0.92 -26.36 10.09 55.49 0.56 -25.80 16 18 Si 0.92 21.73 29.55 -169.99 -5.02 16.70 16 19 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 20 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 C 0.13 3.12 5.62 -2.52 -0.01 3.11 16 23 C 0.07 1.30 4.00 -24.58 -0.10 1.20 16 24 H 0.06 1.10 7.29 -51.93 -0.38 0.72 16 25 O -0.56 -10.75 13.47 -35.23 -0.47 -11.22 16 26 N -0.34 -5.34 11.48 33.42 0.38 -4.96 16 27 O 0.10 1.41 11.20 17.18 0.19 1.60 16 28 H 0.09 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.17 1.18 8.06 -52.49 -0.42 0.76 16 32 H 0.11 1.06 7.40 -51.93 -0.38 0.67 16 33 H 0.11 0.96 8.10 -51.93 -0.42 0.54 16 34 H 0.06 0.60 8.08 -51.93 -0.42 0.18 16 35 H 0.09 1.11 6.08 -51.93 -0.32 0.80 16 36 H 0.07 0.59 6.44 -51.93 -0.33 0.25 16 37 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.03 0.68 5.93 -51.93 -0.31 0.37 16 39 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 40 H 0.11 2.93 5.87 -51.93 -0.31 2.63 16 41 H 0.02 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.37 5.48 9.12 45.56 0.42 5.90 16 LS Contribution 346.58 15.07 5.22 5.22 Total: -1.00 -36.53 346.58 -6.12 -42.65 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -4.90 Total: 4.59 kcal Atomic # 6 Polarization: 9.51 SS G_CDS: -1.09 Total: 8.41 kcal Atomic # 7 Polarization: -56.65 SS G_CDS: -0.13 Total: -56.78 kcal Atomic # 8 Polarization: -20.60 SS G_CDS: -0.20 Total: -20.79 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -36.53 -6.12 -42.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047327277.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.962 kcal (2) G-P(sol) polarization free energy of solvation -36.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds