Wall clock time and date at job start Fri Apr 10 2020 18:01:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50701 * 109.47379 * 2 1 4 4 N 1.29933 * 125.37724 * 90.00351 * 3 2 1 5 5 C 1.36067 * 108.47747 * 180.02562 * 4 3 2 6 6 C 1.47415 * 126.44988 * 179.97438 * 5 4 3 7 7 O 1.21613 * 119.99925 * 184.67940 * 6 5 4 8 8 N 1.34777 * 120.00074 * 4.67944 * 6 5 4 9 9 C 1.46502 * 119.99780 * 4.03509 * 8 6 5 10 10 C 1.46497 * 119.99989 * 184.04281 * 8 6 5 11 11 H 1.08995 * 110.88902 * 0.69896 * 10 8 6 12 12 C 1.54915 * 111.00511 * 124.58020 * 10 8 6 13 13 N 1.47429 * 104.83225 * 155.08036 * 12 10 8 14 14 C 1.36938 * 125.64879 * 155.83733 * 13 12 10 15 15 H 1.08004 * 119.99605 * 354.92997 * 14 13 12 16 16 C 1.38812 * 119.99873 * 174.93354 * 14 13 12 17 17 N 1.31615 * 120.00281 * 5.10664 * 16 14 13 18 18 Si 1.86799 * 119.99534 * 185.10911 * 16 14 13 19 19 H 1.48502 * 109.47206 * 94.99841 * 18 16 14 20 20 H 1.48499 * 109.47125 * 214.99702 * 18 16 14 21 21 H 1.48504 * 109.47354 * 334.99793 * 18 16 14 22 22 C 1.47021 * 108.70326 * 335.87335 * 13 12 10 23 23 C 1.54375 * 107.28796 * 1.09044 * 22 13 12 24 24 H 1.08997 * 110.70460 * 263.79456 * 23 22 13 25 25 O 1.42899 * 110.75514 * 140.51163 * 23 22 13 26 26 C 1.36093 * 107.10326 * 0.22899 * 5 4 3 27 27 O 1.34050 * 125.37607 * 270.04457 * 3 2 1 28 28 H 1.08996 * 109.47116 * 59.99344 * 1 2 3 29 29 H 1.08998 * 109.47127 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46644 * 299.99727 * 1 2 3 31 31 H 1.09007 * 109.46644 * 240.00273 * 2 1 3 32 32 H 1.09004 * 109.47655 * 120.00384 * 2 1 3 33 33 H 1.09007 * 109.46736 * 84.19661 * 9 8 6 34 34 H 1.08990 * 109.47761 * 324.19388 * 9 8 6 35 35 H 1.08993 * 109.47181 * 204.18591 * 9 8 6 36 36 H 1.09001 * 110.36624 * 273.91713 * 12 10 8 37 37 H 1.08999 * 110.36568 * 36.24180 * 12 10 8 38 38 H 0.97003 * 120.00008 * 180.02562 * 17 16 14 39 39 H 1.08998 * 109.88716 * 120.47243 * 22 13 12 40 40 H 1.08998 * 109.88119 * 241.64163 * 22 13 12 41 41 H 0.96698 * 114.00709 * 66.47841 * 25 23 22 42 42 H 1.07997 * 126.53054 * 179.77782 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2832 2.1300 1.0594 5 6 2.7167 3.3576 0.6639 6 6 3.1103 4.4729 1.5438 7 8 3.4003 5.5524 1.0646 8 7 3.1488 4.2963 2.8794 9 6 2.8857 2.9734 3.4512 10 6 3.4535 5.4272 3.7594 11 1 3.6110 6.3378 3.1815 12 6 2.3375 5.6257 4.8153 13 7 3.0001 6.3097 5.9407 14 6 2.3784 7.0933 6.8760 15 1 1.3268 7.3191 6.7783 16 6 3.0998 7.5973 7.9495 17 7 4.4004 7.4068 8.0158 18 14 2.2246 8.5458 9.2999 19 1 1.8892 7.6239 10.4147 20 1 3.1119 9.6261 9.8008 21 1 0.9770 9.1415 8.7577 22 6 4.4390 6.0119 5.8921 23 6 4.6812 5.1186 4.6566 24 1 4.6974 4.0660 4.9393 25 8 5.8946 5.4850 3.9968 26 6 2.7130 3.3641 -0.6970 27 8 2.2903 2.1528 -1.0930 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8932 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8900 33 1 3.8023 2.3836 3.4393 34 1 2.1209 2.4681 2.8615 35 1 2.5383 3.0840 4.4784 36 1 1.5388 6.2474 4.4107 37 1 1.9433 4.6615 5.1364 38 1 4.9045 7.7587 8.7662 39 1 5.0062 6.9377 5.7962 40 1 4.7388 5.4830 6.7968 41 1 6.6921 5.3124 4.5156 42 1 2.9980 4.1861 -1.3368 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047355653.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:09 Heat of formation + Delta-G solvation = -15.485688 kcal Electronic energy + Delta-G solvation = -26054.967976 eV Core-core repulsion = 22231.606492 eV Total energy + Delta-G solvation = -3823.361484 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.152 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -43.64040 -39.74304 -37.77968 -35.47484 -35.06713 -34.62896 -34.15742 -31.82251 -29.76329 -28.57305 -27.30890 -26.59868 -24.89841 -24.63454 -23.55964 -21.63123 -20.44290 -20.34238 -19.13034 -17.72474 -17.10127 -17.04835 -16.91022 -16.33072 -15.85759 -15.11800 -14.94644 -14.81061 -14.62460 -14.06395 -13.83606 -13.66914 -13.08846 -13.02168 -12.86254 -12.69359 -12.48841 -12.20381 -12.06728 -11.98373 -11.64575 -11.53097 -11.32364 -11.19647 -10.84212 -10.79887 -10.44998 -10.14327 -9.90980 -9.88133 -9.78106 -9.26151 -9.20636 -8.67997 -8.26174 -6.89758 -5.75913 -3.10671 0.97867 1.85158 2.34829 3.06526 3.34566 3.39358 3.44542 3.46795 3.63446 4.44425 4.49935 4.53457 4.69844 4.73388 4.79193 4.93666 5.28730 5.32255 5.34765 5.38929 5.45279 5.47409 5.54057 5.56454 5.69925 5.71808 5.77944 5.85622 5.92017 6.07979 6.19808 6.34128 6.55189 6.64709 6.92568 7.28866 7.39075 7.47823 7.62272 7.74952 8.17534 8.23345 8.29184 9.15075 9.75309 10.39112 11.35689 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.023975 B = 0.003179 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.590233 B = 8804.636823 C = 9289.067908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.027 4.027 3 C 0.193 3.807 4 N -0.453 5.453 5 C -0.059 4.059 6 C 0.597 3.403 7 O -0.536 6.536 8 N -0.581 5.581 9 C 0.059 3.941 10 C 0.132 3.868 11 H 0.115 0.885 12 C 0.132 3.868 13 N -0.599 5.599 14 C -0.231 4.231 15 H 0.081 0.919 16 C -0.006 4.006 17 N -0.921 5.921 18 Si 0.915 3.085 19 H -0.288 1.288 20 H -0.290 1.290 21 H -0.280 1.280 22 C 0.153 3.847 23 C 0.066 3.934 24 H 0.056 0.944 25 O -0.561 6.561 26 C 0.007 3.993 27 O -0.197 6.197 28 H 0.060 0.940 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.094 0.906 32 H 0.108 0.892 33 H 0.048 0.952 34 H 0.112 0.888 35 H 0.073 0.927 36 H 0.048 0.952 37 H 0.029 0.971 38 H 0.253 0.747 39 H 0.057 0.943 40 H 0.051 0.949 41 H 0.373 0.627 42 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.010 -16.885 -16.248 23.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.065 4.065 3 C -0.016 4.016 4 N -0.184 5.184 5 C -0.178 4.178 6 C 0.383 3.617 7 O -0.413 6.413 8 N -0.311 5.311 9 C -0.084 4.084 10 C 0.028 3.972 11 H 0.133 0.867 12 C 0.005 3.995 13 N -0.327 5.327 14 C -0.359 4.359 15 H 0.099 0.901 16 C -0.203 4.203 17 N -0.568 5.568 18 Si 0.745 3.255 19 H -0.216 1.216 20 H -0.217 1.217 21 H -0.205 1.205 22 C 0.027 3.973 23 C 0.006 3.994 24 H 0.074 0.926 25 O -0.365 6.365 26 C -0.066 4.066 27 O -0.083 6.083 28 H 0.079 0.921 29 H 0.092 0.908 30 H 0.085 0.915 31 H 0.112 0.888 32 H 0.127 0.873 33 H 0.066 0.934 34 H 0.130 0.870 35 H 0.091 0.909 36 H 0.067 0.933 37 H 0.046 0.954 38 H 0.064 0.936 39 H 0.075 0.925 40 H 0.069 0.931 41 H 0.220 0.780 42 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -4.288 -16.234 -16.153 23.299 hybrid contribution 0.237 0.607 0.661 0.928 sum -4.051 -15.627 -15.493 22.375 Atomic orbital electron populations 1.21799 0.92909 1.03106 1.03169 1.20121 0.96975 0.83979 1.05414 1.26551 0.99401 0.97016 0.78613 1.70878 1.16063 1.02807 1.28642 1.21856 1.08916 0.94058 0.93014 1.16785 0.77751 0.85383 0.81755 1.90821 1.49991 1.25642 1.74882 1.47514 1.67567 1.11022 1.04972 1.22395 1.02557 0.82916 1.00528 1.22455 0.94468 0.89412 0.90840 0.86720 1.21793 0.93662 0.96354 0.87737 1.44240 1.02947 1.56702 1.28773 1.19089 0.93720 1.23151 0.99899 0.90116 1.24834 0.95825 1.00923 0.98669 1.69949 1.05029 1.50270 1.31569 0.86054 0.78430 0.79047 0.81967 1.21560 1.21690 1.20534 1.21849 0.86027 0.97026 0.92349 1.23545 0.84167 0.97664 0.94024 0.92581 1.86496 1.15753 1.88061 1.46205 1.25264 0.99170 0.86464 0.95701 1.84373 1.63597 1.22457 1.37914 0.92134 0.90787 0.91510 0.88786 0.87342 0.93366 0.87049 0.90879 0.93343 0.95350 0.93644 0.92499 0.93081 0.78036 0.75317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 9.89 37.16 0.37 -0.39 16 2 C -0.03 -0.15 6.56 -27.88 -0.18 -0.33 16 3 C 0.19 1.89 7.56 -13.08 -0.10 1.79 16 4 N -0.45 -5.66 7.76 -7.66 -0.06 -5.72 16 5 C -0.06 -0.83 6.70 -83.02 -0.56 -1.39 16 6 C 0.60 10.61 7.67 -12.52 -0.10 10.51 16 7 O -0.54 -11.02 16.28 5.27 0.09 -10.94 16 8 N -0.58 -10.25 2.91 -172.75 -0.50 -10.76 16 9 C 0.06 0.86 8.57 59.85 0.51 1.37 16 10 C 0.13 2.70 3.17 -65.78 -0.21 2.49 16 11 H 0.11 2.66 7.02 -51.93 -0.36 2.30 16 12 C 0.13 2.85 6.78 -2.52 -0.02 2.84 16 13 N -0.60 -15.56 3.39 -170.03 -0.58 -16.13 16 14 C -0.23 -6.47 10.27 -15.06 -0.15 -6.63 16 15 H 0.08 2.18 7.83 -52.48 -0.41 1.77 16 16 C -0.01 -0.17 5.48 -17.43 -0.10 -0.27 16 17 N -0.92 -26.96 10.34 55.49 0.57 -26.38 16 18 Si 0.91 22.12 29.56 -169.99 -5.02 17.10 16 19 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 C 0.15 3.77 5.15 -3.04 -0.02 3.75 16 23 C 0.07 1.35 3.91 -24.87 -0.10 1.25 16 24 H 0.06 1.05 7.21 -51.93 -0.37 0.68 16 25 O -0.56 -10.98 13.39 -35.23 -0.47 -11.46 16 26 C 0.01 0.08 11.95 29.96 0.36 0.44 16 27 O -0.20 -2.02 10.73 6.49 0.07 -1.95 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.11 1.52 4.96 -51.93 -0.26 1.26 16 35 H 0.07 1.07 6.16 -51.93 -0.32 0.75 16 36 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.03 0.59 6.15 -51.93 -0.32 0.27 16 38 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 39 H 0.06 1.57 7.45 -51.93 -0.39 1.19 16 40 H 0.05 1.35 7.37 -51.93 -0.38 0.96 16 41 H 0.37 5.64 9.12 45.56 0.42 6.06 16 42 H 0.23 1.98 8.06 -52.49 -0.42 1.55 16 LS Contribution 345.97 15.07 5.21 5.21 Total: -1.00 -34.88 345.97 -5.89 -40.78 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -4.92 Total: 4.81 kcal Atomic # 6 Polarization: 15.73 SS G_CDS: -0.29 Total: 15.44 kcal Atomic # 7 Polarization: -58.43 SS G_CDS: -0.57 Total: -58.99 kcal Atomic # 8 Polarization: -24.03 SS G_CDS: -0.32 Total: -24.35 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -34.88 -5.89 -40.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047355653.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.290 kcal (2) G-P(sol) polarization free energy of solvation -34.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds