Wall clock time and date at job start Fri Apr 10 2020 18:01:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34778 * 119.99319 * 2 1 4 4 O 1.21542 * 119.99696 * 182.81760 * 3 2 1 5 5 C 1.47991 * 120.00452 * 2.82300 * 3 2 1 6 6 N 1.32808 * 119.75373 * 353.75117 * 5 3 2 7 7 C 1.31433 * 121.66840 * 179.97438 * 6 5 3 8 8 C 1.38674 * 120.98041 * 0.04314 * 7 6 5 9 9 C 1.38455 * 119.39697 * 359.97438 * 8 7 6 10 10 C 1.38956 * 118.46384 * 0.02562 * 9 8 7 11 11 F 1.35101 * 120.50376 * 179.72415 * 10 9 8 12 12 C 1.46491 * 120.00287 * 179.97438 * 2 1 3 13 13 H 1.09000 * 110.88947 * 177.57489 * 12 2 1 14 14 C 1.54910 * 111.00607 * 301.45502 * 12 2 1 15 15 N 1.47422 * 104.83308 * 155.08179 * 14 12 2 16 16 C 1.36938 * 125.64881 * 155.91034 * 15 14 12 17 17 H 1.08002 * 119.99751 * 359.97438 * 16 15 14 18 18 C 1.38815 * 120.00172 * 180.02562 * 16 15 14 19 19 N 1.31616 * 119.99647 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00039 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47131 * 60.00001 * 20 18 16 22 22 H 1.48491 * 109.47258 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47266 * 300.00383 * 20 18 16 24 24 C 1.47017 * 108.70595 * 335.87487 * 15 14 12 25 25 C 1.54322 * 107.26927 * 1.05882 * 24 15 14 26 26 H 1.09006 * 110.72289 * 263.82827 * 25 24 15 27 27 O 1.42895 * 110.72097 * 140.55979 * 25 24 15 28 28 H 1.09005 * 109.46785 * 83.83861 * 1 2 3 29 29 H 1.09000 * 109.46938 * 203.82888 * 1 2 3 30 30 H 1.08998 * 109.47751 * 323.83434 * 1 2 3 31 31 H 1.08006 * 119.50390 * 180.02562 * 7 6 5 32 32 H 1.08002 * 120.30000 * 179.97438 * 8 7 6 33 33 H 1.07994 * 120.76373 * 179.97438 * 9 8 7 34 34 H 1.09002 * 110.36930 * 273.92260 * 14 12 2 35 35 H 1.09004 * 110.36424 * 36.13956 * 14 12 2 36 36 H 0.97004 * 119.99636 * 180.02562 * 19 18 16 37 37 H 1.09002 * 109.88360 * 120.47747 * 24 15 14 38 38 H 1.08997 * 109.88596 * 241.48938 * 24 15 14 39 39 H 0.96698 * 114.00662 * 66.47519 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3531 1.1680 -0.0517 5 6 1.4001 2.4481 0.0631 6 7 0.0738 2.4482 -0.0059 7 6 -0.6198 3.5633 0.0469 8 6 0.0115 4.7912 0.1768 9 6 1.3931 4.8404 0.2522 10 6 2.1025 3.6470 0.1940 11 9 3.4519 3.6475 0.2583 12 6 2.1975 -1.2686 0.0006 13 1 3.2730 -1.0964 -0.0426 14 6 1.8217 -2.1263 1.2346 15 7 2.0993 -3.5157 0.8272 16 6 2.3685 -4.5572 1.6746 17 1 2.3903 -4.3932 2.7419 18 6 2.6145 -5.8234 1.1618 19 7 2.5885 -6.0231 -0.1389 20 14 2.9825 -7.2440 2.3176 21 1 1.8328 -7.4458 3.2356 22 1 3.2067 -8.4805 1.5266 23 1 4.2000 -6.9349 3.1098 24 6 2.0383 -3.5981 -0.6394 25 6 1.7323 -2.1801 -1.1656 26 1 0.6644 -2.0583 -1.3478 27 8 2.4828 -1.9077 -2.3507 28 1 -0.3633 0.1103 -1.0218 29 1 -0.3633 -0.9401 0.4152 30 1 -0.3634 0.8296 0.6064 31 1 -1.6975 3.5227 -0.0120 32 1 -0.5694 5.7008 0.2187 33 1 1.9075 5.7846 0.3532 34 1 2.4388 -1.8513 2.0900 35 1 0.7655 -2.0034 1.4745 36 1 2.7600 -6.9080 -0.4973 37 1 2.9959 -3.9405 -1.0316 38 1 1.2477 -4.2860 -0.9395 39 1 2.2307 -2.4512 -3.1097 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047579533.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:42 Heat of formation + Delta-G solvation = -28.223492 kcal Electronic energy + Delta-G solvation = -25897.192140 eV Core-core repulsion = 21949.817998 eV Total energy + Delta-G solvation = -3947.374142 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 309.128 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -49.10253 -40.82016 -39.31242 -37.71228 -35.20629 -34.78149 -33.03263 -31.83456 -31.26303 -28.55060 -27.31911 -26.66028 -25.14061 -24.18732 -23.68270 -21.15959 -20.38075 -19.27765 -17.99199 -17.74598 -17.25144 -16.95690 -16.70475 -16.20867 -15.83820 -15.52662 -14.98557 -14.67483 -14.32265 -14.01880 -13.92983 -13.66917 -13.57079 -13.11601 -12.84209 -12.69756 -12.62592 -12.27634 -11.99655 -11.87602 -11.40498 -11.19423 -10.84150 -10.77503 -10.37134 -10.23135 -10.13628 -9.88138 -9.80304 -9.40512 -9.34032 -9.23792 -8.68129 -8.27205 -6.89801 -5.74472 -3.09710 0.21049 0.62596 2.63613 2.94718 3.40749 3.44781 3.46080 3.48302 3.69267 3.86830 4.24689 4.33023 4.43043 4.47766 4.72149 4.86918 5.22765 5.29282 5.35416 5.45333 5.46495 5.48353 5.64724 5.71371 5.87278 5.89662 6.02731 6.08181 6.18710 6.31619 6.54150 6.63806 6.90942 7.24926 7.37575 7.49226 7.57896 7.75370 8.18180 8.23694 8.26177 9.15953 9.76089 10.39480 11.36805 Molecular weight = 309.13amu Principal moments of inertia in cm(-1) A = 0.026951 B = 0.003330 C = 0.003324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.677440 B = 8405.182878 C = 8422.525381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.576 5.576 3 C 0.562 3.438 4 O -0.521 6.521 5 C 0.056 3.944 6 N -0.421 5.421 7 C 0.079 3.921 8 C -0.124 4.124 9 C -0.119 4.119 10 C 0.110 3.890 11 F -0.104 7.104 12 C 0.131 3.869 13 H 0.115 0.885 14 C 0.132 3.868 15 N -0.599 5.599 16 C -0.231 4.231 17 H 0.080 0.920 18 C -0.006 4.006 19 N -0.922 5.922 20 Si 0.916 3.084 21 H -0.284 1.284 22 H -0.290 1.290 23 H -0.284 1.284 24 C 0.153 3.847 25 C 0.067 3.933 26 H 0.057 0.943 27 O -0.561 6.561 28 H 0.053 0.947 29 H 0.068 0.932 30 H 0.107 0.893 31 H 0.171 0.829 32 H 0.149 0.851 33 H 0.154 0.846 34 H 0.048 0.952 35 H 0.028 0.972 36 H 0.254 0.746 37 H 0.060 0.940 38 H 0.048 0.952 39 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.541 21.683 -1.528 23.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.306 5.306 3 C 0.347 3.653 4 O -0.396 6.396 5 C -0.083 4.083 6 N -0.133 5.133 7 C -0.080 4.080 8 C -0.144 4.144 9 C -0.145 4.145 10 C 0.087 3.913 11 F -0.082 7.082 12 C 0.027 3.973 13 H 0.133 0.867 14 C 0.005 3.995 15 N -0.326 5.326 16 C -0.359 4.359 17 H 0.098 0.902 18 C -0.202 4.202 19 N -0.570 5.570 20 Si 0.746 3.254 21 H -0.211 1.211 22 H -0.216 1.216 23 H -0.210 1.210 24 C 0.028 3.972 25 C 0.007 3.993 26 H 0.075 0.925 27 O -0.365 6.365 28 H 0.072 0.928 29 H 0.086 0.914 30 H 0.124 0.876 31 H 0.188 0.812 32 H 0.167 0.833 33 H 0.171 0.829 34 H 0.067 0.933 35 H 0.045 0.955 36 H 0.064 0.936 37 H 0.078 0.922 38 H 0.067 0.933 39 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -8.894 21.030 -1.272 22.869 hybrid contribution 0.381 -0.369 0.220 0.574 sum -8.513 20.661 -1.052 22.371 Atomic orbital electron populations 1.22435 0.78492 1.03792 1.02640 1.47578 1.07781 1.05045 1.70206 1.17666 0.86586 0.82737 0.78286 1.90860 1.12562 1.86383 1.49831 1.21556 0.90453 0.93612 1.02696 1.68282 1.05500 1.29773 1.09750 1.23102 1.01229 0.87416 0.96275 1.22288 0.93987 1.00345 0.97734 1.21725 0.95003 0.97647 1.00171 1.18657 0.78811 0.94082 0.99742 1.91641 1.27052 1.97054 1.92458 1.22488 0.98436 0.80941 0.95457 0.86671 1.21785 0.98008 0.85571 0.94158 1.44224 1.83374 1.03019 1.02021 1.19034 1.41466 0.86489 0.88933 0.90180 1.24822 1.01666 0.97598 0.96164 1.69928 1.55407 1.21691 1.09925 0.86142 0.78243 0.81548 0.79474 1.21104 1.21559 1.21043 1.21840 1.01766 0.89545 0.84099 1.23532 0.93575 0.97296 0.84906 0.92473 1.86497 1.64018 1.64777 1.21243 0.92803 0.91361 0.87587 0.81173 0.83303 0.82852 0.93336 0.95452 0.93582 0.92155 0.93344 0.77997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.95 7.98 59.85 0.48 1.42 16 2 N -0.58 -10.02 2.91 -172.54 -0.50 -10.52 16 3 C 0.56 10.12 7.66 -12.26 -0.09 10.03 16 4 O -0.52 -11.21 14.72 5.33 0.08 -11.13 16 5 C 0.06 0.78 6.64 -82.95 -0.55 0.23 16 6 N -0.42 -4.66 6.00 -9.76 -0.06 -4.72 16 7 C 0.08 0.56 11.18 -17.56 -0.20 0.36 16 8 C -0.12 -0.70 10.11 -39.34 -0.40 -1.09 16 9 C -0.12 -0.93 10.16 -39.24 -0.40 -1.33 16 10 C 0.11 1.37 7.31 -38.82 -0.28 1.08 16 11 F -0.10 -1.56 15.57 2.25 0.04 -1.52 16 12 C 0.13 2.67 3.17 -65.79 -0.21 2.46 16 13 H 0.12 2.70 7.01 -51.93 -0.36 2.33 16 14 C 0.13 2.85 6.79 -2.53 -0.02 2.84 16 15 N -0.60 -15.53 3.39 -170.08 -0.58 -16.11 16 16 C -0.23 -6.49 10.28 -15.06 -0.15 -6.65 16 17 H 0.08 2.16 7.83 -52.49 -0.41 1.74 16 18 C -0.01 -0.17 5.49 -17.43 -0.10 -0.27 16 19 N -0.92 -27.00 10.31 55.49 0.57 -26.42 16 20 Si 0.92 22.16 29.55 -169.99 -5.02 17.14 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 23 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 24 C 0.15 3.75 5.15 -3.07 -0.02 3.74 16 25 C 0.07 1.35 3.89 -24.90 -0.10 1.26 16 26 H 0.06 1.04 7.06 -51.93 -0.37 0.68 16 27 O -0.56 -10.93 13.39 -35.23 -0.47 -11.40 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.07 0.95 6.32 -51.93 -0.33 0.62 16 30 H 0.11 1.29 5.16 -53.29 -0.28 1.02 16 31 H 0.17 0.60 8.06 -52.48 -0.42 0.18 16 32 H 0.15 0.30 8.06 -52.49 -0.42 -0.13 16 33 H 0.15 0.77 8.06 -52.49 -0.42 0.35 16 34 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 35 H 0.03 0.56 6.34 -51.93 -0.33 0.23 16 36 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 37 H 0.06 1.67 7.29 -51.93 -0.38 1.29 16 38 H 0.05 1.27 7.50 -51.93 -0.39 0.88 16 39 H 0.37 5.60 9.12 45.56 0.42 6.02 16 LS Contribution 325.37 15.07 4.90 4.90 Total: -1.00 -35.36 325.37 -6.75 -42.11 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -3.68 Total: 3.61 kcal Atomic # 6 Polarization: 16.11 SS G_CDS: -2.03 Total: 14.08 kcal Atomic # 7 Polarization: -57.21 SS G_CDS: -0.57 Total: -57.78 kcal Atomic # 8 Polarization: -22.14 SS G_CDS: -0.39 Total: -22.54 kcal Atomic # 9 Polarization: -1.56 SS G_CDS: 0.04 Total: -1.52 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -35.36 -6.75 -42.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047579533.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.886 kcal (2) G-P(sol) polarization free energy of solvation -35.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds