Wall clock time and date at job start Fri Apr 10 2020 18:01:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34778 * 119.99319 * 2 1 4 4 O 1.21542 * 119.99696 * 182.81760 * 3 2 1 5 5 C 1.47991 * 120.00452 * 2.82300 * 3 2 1 6 6 N 1.32808 * 119.75373 * 353.75117 * 5 3 2 7 7 C 1.31433 * 121.66840 * 179.97438 * 6 5 3 8 8 C 1.38674 * 120.98041 * 0.04314 * 7 6 5 9 9 C 1.38455 * 119.39697 * 359.97438 * 8 7 6 10 10 C 1.38956 * 118.46384 * 0.02562 * 9 8 7 11 11 F 1.35101 * 120.50376 * 179.72415 * 10 9 8 12 12 C 1.46491 * 120.00287 * 179.97438 * 2 1 3 13 13 H 1.09000 * 110.88947 * 177.57489 * 12 2 1 14 14 C 1.54910 * 111.00607 * 301.45502 * 12 2 1 15 15 N 1.47422 * 104.83308 * 155.08179 * 14 12 2 16 16 C 1.36938 * 125.64881 * 155.91034 * 15 14 12 17 17 H 1.08002 * 119.99751 * 359.97438 * 16 15 14 18 18 C 1.38815 * 120.00172 * 180.02562 * 16 15 14 19 19 N 1.31616 * 119.99647 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00039 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47131 * 60.00001 * 20 18 16 22 22 H 1.48491 * 109.47258 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47266 * 300.00383 * 20 18 16 24 24 C 1.47017 * 108.70595 * 335.87487 * 15 14 12 25 25 C 1.54322 * 107.26927 * 1.05882 * 24 15 14 26 26 H 1.09006 * 110.72289 * 263.82827 * 25 24 15 27 27 O 1.42895 * 110.72097 * 140.55979 * 25 24 15 28 28 H 1.09005 * 109.46785 * 83.83861 * 1 2 3 29 29 H 1.09000 * 109.46938 * 203.82888 * 1 2 3 30 30 H 1.08998 * 109.47751 * 323.83434 * 1 2 3 31 31 H 1.08006 * 119.50390 * 180.02562 * 7 6 5 32 32 H 1.08002 * 120.30000 * 179.97438 * 8 7 6 33 33 H 1.07994 * 120.76373 * 179.97438 * 9 8 7 34 34 H 1.09002 * 110.36930 * 273.92260 * 14 12 2 35 35 H 1.09004 * 110.36424 * 36.13956 * 14 12 2 36 36 H 0.97004 * 119.99636 * 180.02562 * 19 18 16 37 37 H 1.09002 * 109.88360 * 120.47747 * 24 15 14 38 38 H 1.08997 * 109.88596 * 241.48938 * 24 15 14 39 39 H 0.96698 * 114.00662 * 66.47519 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3531 1.1680 -0.0517 5 6 1.4001 2.4481 0.0631 6 7 0.0738 2.4482 -0.0059 7 6 -0.6198 3.5633 0.0469 8 6 0.0115 4.7912 0.1768 9 6 1.3931 4.8404 0.2522 10 6 2.1025 3.6470 0.1940 11 9 3.4519 3.6475 0.2583 12 6 2.1975 -1.2686 0.0006 13 1 3.2730 -1.0964 -0.0426 14 6 1.8217 -2.1263 1.2346 15 7 2.0993 -3.5157 0.8272 16 6 2.3685 -4.5572 1.6746 17 1 2.3903 -4.3932 2.7419 18 6 2.6145 -5.8234 1.1618 19 7 2.5885 -6.0231 -0.1389 20 14 2.9825 -7.2440 2.3176 21 1 1.8328 -7.4458 3.2356 22 1 3.2067 -8.4805 1.5266 23 1 4.2000 -6.9349 3.1098 24 6 2.0383 -3.5981 -0.6394 25 6 1.7323 -2.1801 -1.1656 26 1 0.6644 -2.0583 -1.3478 27 8 2.4828 -1.9077 -2.3507 28 1 -0.3633 0.1103 -1.0218 29 1 -0.3633 -0.9401 0.4152 30 1 -0.3634 0.8296 0.6064 31 1 -1.6975 3.5227 -0.0120 32 1 -0.5694 5.7008 0.2187 33 1 1.9075 5.7846 0.3532 34 1 2.4388 -1.8513 2.0900 35 1 0.7655 -2.0034 1.4745 36 1 2.7600 -6.9080 -0.4973 37 1 2.9959 -3.9405 -1.0316 38 1 1.2477 -4.2860 -0.9395 39 1 2.2307 -2.4512 -3.1097 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047579533.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:41 Heat of formation + Delta-G solvation = -55.732503 kcal Electronic energy + Delta-G solvation = -25898.385020 eV Core-core repulsion = 21949.817998 eV Total energy + Delta-G solvation = -3948.567022 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 309.128 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.06369 -41.82768 -40.53875 -39.29797 -36.78686 -36.43496 -34.13080 -33.40962 -32.14467 -30.36491 -29.06936 -27.89609 -26.66120 -25.48427 -24.50163 -22.51897 -22.25059 -20.73641 -19.08842 -19.02566 -18.67374 -18.16512 -18.04658 -17.41933 -17.22407 -16.66272 -16.35120 -16.19377 -15.78915 -15.48808 -14.97314 -14.67200 -14.58896 -14.51729 -14.43197 -14.23229 -13.95372 -13.64854 -13.44583 -13.19923 -13.06726 -12.86679 -12.70518 -12.69008 -12.12786 -11.89479 -11.60834 -11.50617 -11.00920 -10.94262 -10.78105 -10.32113 -10.16913 -9.66917 -8.98487 -7.89249 -5.27862 -0.58965 -0.00709 1.45434 1.49713 1.55515 1.57364 1.69329 2.46689 2.61808 2.85104 3.02232 3.10549 3.31584 3.52150 3.54962 3.61772 3.80814 3.92168 4.01151 4.06906 4.26350 4.33639 4.41200 4.53358 4.60222 4.72199 4.82177 4.84152 4.93664 4.95851 5.19970 5.34180 5.39634 5.45092 5.60840 5.62812 6.10277 6.22337 6.55920 6.81287 6.94423 7.01911 7.66410 8.29727 9.20389 Molecular weight = 309.13amu Principal moments of inertia in cm(-1) A = 0.026951 B = 0.003330 C = 0.003324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.677440 B = 8405.182878 C = 8422.525381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.576 5.576 3 C 0.552 3.448 4 O -0.574 6.574 5 C 0.024 3.976 6 N -0.437 5.437 7 C 0.087 3.913 8 C -0.091 4.091 9 C -0.111 4.111 10 C 0.081 3.919 11 F -0.131 7.131 12 C 0.140 3.860 13 H 0.076 0.924 14 C 0.136 3.864 15 N -0.620 5.620 16 C -0.251 4.251 17 H 0.086 0.914 18 C -0.062 4.062 19 N -0.949 5.949 20 Si 0.984 3.016 21 H -0.272 1.272 22 H -0.292 1.292 23 H -0.280 1.280 24 C 0.166 3.834 25 C 0.087 3.913 26 H 0.087 0.913 27 O -0.572 6.572 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.127 0.873 31 H 0.215 0.785 32 H 0.202 0.798 33 H 0.183 0.817 34 H 0.041 0.959 35 H 0.053 0.947 36 H 0.250 0.750 37 H 0.019 0.981 38 H 0.028 0.972 39 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.799 24.536 -0.965 27.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.306 5.306 3 C 0.341 3.659 4 O -0.453 6.453 5 C -0.113 4.113 6 N -0.149 5.149 7 C -0.074 4.074 8 C -0.110 4.110 9 C -0.137 4.137 10 C 0.058 3.942 11 F -0.110 7.110 12 C 0.035 3.965 13 H 0.094 0.906 14 C 0.009 3.991 15 N -0.348 5.348 16 C -0.379 4.379 17 H 0.104 0.896 18 C -0.255 4.255 19 N -0.598 5.598 20 Si 0.812 3.188 21 H -0.197 1.197 22 H -0.218 1.218 23 H -0.206 1.206 24 C 0.040 3.960 25 C 0.027 3.973 26 H 0.105 0.895 27 O -0.380 6.380 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.145 0.855 31 H 0.232 0.768 32 H 0.219 0.781 33 H 0.201 0.799 34 H 0.059 0.941 35 H 0.071 0.929 36 H 0.059 0.941 37 H 0.037 0.963 38 H 0.046 0.954 39 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -12.186 23.905 -0.710 26.841 hybrid contribution 1.271 -1.068 0.026 1.660 sum -10.915 22.837 -0.684 25.321 Atomic orbital electron populations 1.22663 0.75936 1.04590 1.03867 1.47618 1.09092 1.03740 1.70152 1.18423 0.86397 0.84234 0.76897 1.90811 1.14995 1.87381 1.52152 1.20883 0.91736 0.91700 1.06947 1.68092 1.03950 1.32172 1.10639 1.23952 1.02939 0.86767 0.93736 1.22908 0.93008 1.01801 0.93300 1.22151 0.96025 0.96810 0.98715 1.19134 0.77990 0.95533 1.01552 1.91566 1.29195 1.97243 1.92990 1.22005 0.96851 0.82589 0.95054 0.90563 1.21858 0.99013 0.83768 0.94414 1.44490 1.83457 1.04329 1.02506 1.19447 1.41325 0.87440 0.89695 0.89629 1.25708 1.01853 1.00147 0.97783 1.70143 1.56249 1.21793 1.11565 0.85074 0.78322 0.77902 0.77528 1.19710 1.21829 1.20613 1.21579 0.98793 0.91893 0.83769 1.23285 0.94965 0.94148 0.84934 0.89547 1.86469 1.64483 1.65228 1.21782 0.91623 0.91492 0.85538 0.76837 0.78059 0.79937 0.94111 0.92949 0.94127 0.96319 0.95385 0.75719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.81 7.98 127.77 1.02 2.83 16 2 N -0.58 -20.34 2.91 -818.07 -2.38 -22.72 16 3 C 0.55 20.71 7.66 86.83 0.66 21.37 16 4 O -0.57 -26.61 14.72 -3.85 -0.06 -26.67 16 5 C 0.02 0.65 6.64 41.90 0.28 0.92 16 6 N -0.44 -8.42 6.00 -184.79 -1.11 -9.53 16 7 C 0.09 0.75 11.18 84.86 0.95 1.70 16 8 C -0.09 -0.47 10.11 22.43 0.23 -0.24 16 9 C -0.11 -1.32 10.16 22.49 0.23 -1.09 16 10 C 0.08 1.97 7.31 22.76 0.17 2.14 16 11 F -0.13 -4.15 15.57 44.97 0.70 -3.45 16 12 C 0.14 5.96 3.17 46.38 0.15 6.11 16 13 H 0.08 3.85 7.01 -2.39 -0.02 3.83 16 14 C 0.14 6.02 6.79 86.86 0.59 6.61 16 15 N -0.62 -33.25 3.39 -692.00 -2.35 -35.60 16 16 C -0.25 -14.41 10.28 84.03 0.86 -13.55 16 17 H 0.09 4.68 7.83 -2.91 -0.02 4.65 16 18 C -0.06 -3.55 5.49 84.86 0.47 -3.09 16 19 N -0.95 -57.47 10.31 21.65 0.22 -57.25 16 20 Si 0.98 46.25 29.55 68.60 2.03 48.28 16 21 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 22 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 23 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 24 C 0.17 8.48 5.15 86.73 0.45 8.92 16 25 C 0.09 3.58 3.89 31.78 0.12 3.70 16 26 H 0.09 3.07 7.06 -2.38 -0.02 3.05 16 27 O -0.57 -22.83 13.39 -148.98 -1.99 -24.82 16 28 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 29 H 0.07 1.73 6.32 -2.39 -0.02 1.71 16 30 H 0.13 2.78 5.16 -5.08 -0.03 2.76 16 31 H 0.22 -0.02 8.06 -2.91 -0.02 -0.04 16 32 H 0.20 -0.93 8.06 -2.91 -0.02 -0.95 16 33 H 0.18 1.05 8.06 -2.91 -0.02 1.02 16 34 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.05 2.09 6.34 -2.38 -0.02 2.08 16 36 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 37 H 0.02 1.10 7.29 -2.39 -0.02 1.08 16 38 H 0.03 1.53 7.50 -2.39 -0.02 1.51 16 39 H 0.39 11.89 9.12 -74.06 -0.68 11.22 16 Total: -1.00 -84.50 325.37 1.65 -82.85 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: 0.42 Total: 12.57 kcal Atomic # 6 Polarization: 30.17 SS G_CDS: 6.17 Total: 36.34 kcal Atomic # 7 Polarization: -119.49 SS G_CDS: -5.61 Total: -125.10 kcal Atomic # 8 Polarization: -49.44 SS G_CDS: -2.05 Total: -51.49 kcal Atomic # 9 Polarization: -4.15 SS G_CDS: 0.70 Total: -3.45 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.28 kcal Total: -84.50 1.65 -82.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047579533.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.121 kcal (2) G-P(sol) polarization free energy of solvation -84.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds