Wall clock time and date at job start Fri Apr 10 2020 17:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86799 * 120.00003 * 2 1 4 4 H 1.48494 * 109.47399 * 270.00576 * 3 2 1 5 5 H 1.48501 * 109.47004 * 30.01160 * 3 2 1 6 6 H 1.48507 * 109.46830 * 150.00313 * 3 2 1 7 7 C 1.38816 * 119.99708 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00225 * 359.97438 * 7 2 1 9 9 N 1.36936 * 119.99693 * 179.97438 * 7 2 1 10 10 C 1.46500 * 119.99909 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47127 * 180.02562 * 10 9 7 12 12 H 1.09003 * 109.46322 * 59.99467 * 11 10 9 13 13 C 1.54800 * 109.46885 * 179.97438 * 11 10 9 14 14 N 1.45127 * 109.53703 * 187.88705 * 13 11 10 15 15 C 1.34774 * 118.75534 * 90.68610 * 14 13 11 16 16 O 1.21288 * 120.00266 * 0.02562 * 15 14 13 17 17 C 1.50696 * 119.99789 * 180.02562 * 15 14 13 18 18 C 1.50704 * 109.47346 * 180.02562 * 17 15 14 19 19 C 1.41375 * 126.80530 * 124.99657 * 18 17 15 20 20 C 1.35453 * 103.98973 * 180.02562 * 19 18 17 21 21 O 1.34038 * 106.44132 * 0.02562 * 20 19 18 22 22 N 1.20922 * 111.57141 * 359.70710 * 21 20 19 23 23 C 1.47504 * 122.48426 * 270.71448 * 14 13 11 24 24 C 1.53569 * 111.03023 * 41.62202 * 23 14 13 25 25 C 1.51540 * 109.57768 * 39.98490 * 24 23 14 26 26 O 1.38015 * 109.46831 * 300.00318 * 11 10 9 27 27 H 0.97002 * 119.99651 * 359.97438 * 1 2 3 28 28 H 0.97001 * 119.99953 * 0.02562 * 9 7 2 29 29 H 1.08996 * 109.46768 * 60.00350 * 10 9 7 30 30 H 1.08995 * 109.46917 * 300.00150 * 10 9 7 31 31 H 1.09001 * 109.46022 * 67.86813 * 13 11 10 32 32 H 1.09000 * 109.45413 * 307.90099 * 13 11 10 33 33 H 1.09002 * 109.47363 * 299.99768 * 17 15 14 34 34 H 1.09005 * 109.47494 * 60.00447 * 17 15 14 35 35 H 1.08002 * 128.00250 * 359.97395 * 19 18 17 36 36 H 1.07996 * 126.77984 * 179.97438 * 20 19 18 37 37 H 1.08998 * 109.16054 * 281.22655 * 23 14 13 38 38 H 1.08995 * 109.12072 * 161.99615 * 23 14 13 39 39 H 1.09003 * 109.45722 * 279.95276 * 24 23 14 40 40 H 1.08997 * 109.45202 * 160.01296 * 24 23 14 41 41 H 1.08997 * 109.59138 * 148.81755 * 25 24 23 42 42 H 1.08990 * 109.59168 * 28.37745 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4478 2.6526 0.7003 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2022 -0.0011 10 6 4.1121 -2.4710 -0.0011 11 6 5.6164 -2.1914 -0.0011 12 1 5.8795 -1.6197 0.8889 13 6 6.3903 -3.5320 -0.0004 14 7 7.8062 -3.2750 0.1873 15 6 8.3009 -3.2545 1.4408 16 8 7.5662 -3.4493 2.3860 17 6 9.7669 -2.9897 1.6680 18 6 10.0600 -3.0213 3.1459 19 6 11.0226 -3.8227 3.8015 20 6 10.8948 -3.4857 5.1072 21 8 9.9263 -2.5610 5.1673 22 7 9.4798 -2.3129 4.0713 23 6 8.7242 -3.0346 -0.9420 24 6 8.0756 -2.1247 -1.9955 25 6 7.2900 -1.0282 -1.3049 26 8 5.9497 -1.4676 -1.1279 27 1 -0.4850 0.8401 0.0004 28 1 3.8646 -0.3622 -0.0007 29 1 3.8484 -3.0426 -0.8908 30 1 3.8491 -3.0423 0.8891 31 1 6.2366 -4.0405 -0.9522 32 1 6.0249 -4.1617 0.8108 33 1 10.3568 -3.7556 1.1646 34 1 10.0256 -2.0097 1.2669 35 1 11.7019 -4.5386 3.3629 36 1 11.4608 -3.8841 5.9363 37 1 8.9821 -3.9882 -1.4027 38 1 9.6320 -2.5601 -0.5694 39 1 7.4042 -2.7139 -2.6202 40 1 8.8518 -1.6787 -2.6172 41 1 7.3011 -0.1281 -1.9195 42 1 7.7359 -0.8154 -0.3334 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200153171.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:46 Heat of formation + Delta-G solvation = 14.668072 kcal Electronic energy + Delta-G solvation = -26089.468851 eV Core-core repulsion = 22267.414932 eV Total energy + Delta-G solvation = -3822.053919 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.152 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -45.15236 -40.70601 -38.65354 -35.79938 -34.97763 -34.68760 -32.91536 -31.98619 -31.13412 -30.43389 -28.64641 -26.76468 -25.22595 -23.40427 -22.76632 -21.77027 -21.51969 -21.01266 -19.22056 -18.02531 -17.91730 -17.65194 -17.27309 -16.62946 -16.48498 -16.05612 -15.40274 -15.00508 -14.49784 -14.32035 -14.17223 -13.74147 -13.61503 -13.43343 -13.27712 -12.86460 -12.78281 -12.56506 -12.37342 -12.13401 -11.83146 -11.50546 -11.47812 -11.18967 -10.92043 -10.78082 -10.48202 -10.35051 -10.06159 -9.90622 -9.80840 -9.52526 -9.49838 -8.81016 -8.67037 -7.11985 -5.67395 -3.01427 1.31383 1.92730 2.40802 2.76620 3.05802 3.47458 3.52178 3.53424 3.79822 3.83034 4.07520 4.35924 4.47268 4.58462 4.69929 4.74743 4.81737 4.85226 4.93329 5.07438 5.10055 5.23569 5.26255 5.33867 5.37841 5.40322 5.50621 5.62669 5.68340 5.73655 5.82476 5.88098 5.98075 6.03438 6.39401 6.60628 6.71286 7.07513 7.86346 7.98220 8.08959 8.09330 8.51864 9.31782 10.04435 10.25549 11.51192 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.015985 B = 0.003585 C = 0.003221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.248015 B = 7809.497891 C = 8689.560638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.003 3.997 3 Si 0.886 3.114 4 H -0.284 1.284 5 H -0.292 1.292 6 H -0.278 1.278 7 C -0.240 4.240 8 H 0.090 0.910 9 N -0.750 5.750 10 C 0.171 3.829 11 C 0.084 3.916 12 H 0.051 0.949 13 C 0.083 3.917 14 N -0.611 5.611 15 C 0.507 3.493 16 O -0.515 6.515 17 C -0.061 4.061 18 C 0.019 3.981 19 C -0.230 4.230 20 C -0.063 4.063 21 O 0.108 5.892 22 N -0.333 5.333 23 C 0.104 3.896 24 C -0.167 4.167 25 C 0.071 3.929 26 O -0.371 6.371 27 H 0.258 0.742 28 H 0.364 0.636 29 H 0.035 0.965 30 H 0.043 0.957 31 H 0.086 0.914 32 H 0.095 0.905 33 H 0.115 0.885 34 H 0.111 0.889 35 H 0.171 0.829 36 H 0.216 0.784 37 H 0.070 0.930 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.089 0.911 42 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.751 -9.350 1.286 32.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.192 4.192 3 Si 0.717 3.283 4 H -0.210 1.210 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.370 4.370 8 H 0.108 0.892 9 N -0.395 5.395 10 C 0.043 3.957 11 C 0.024 3.976 12 H 0.069 0.931 13 C -0.040 4.040 14 N -0.345 5.345 15 C 0.293 3.707 16 O -0.389 6.389 17 C -0.101 4.101 18 C -0.141 4.141 19 C -0.252 4.252 20 C -0.145 4.145 21 O 0.037 5.963 22 N -0.032 5.032 23 C -0.018 4.018 24 C -0.205 4.205 25 C -0.006 4.006 26 O -0.289 6.289 27 H 0.068 0.932 28 H 0.197 0.803 29 H 0.053 0.947 30 H 0.060 0.940 31 H 0.104 0.896 32 H 0.113 0.887 33 H 0.133 0.867 34 H 0.129 0.871 35 H 0.189 0.811 36 H 0.232 0.768 37 H 0.089 0.911 38 H 0.100 0.900 39 H 0.103 0.897 40 H 0.104 0.896 41 H 0.107 0.893 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 28.998 -8.584 1.629 30.286 hybrid contribution 1.593 0.406 -0.116 1.648 sum 30.591 -8.178 1.513 31.701 Atomic orbital electron populations 1.69710 1.05068 1.25726 1.57980 1.24640 0.95226 0.97189 1.02164 0.86501 0.79172 0.84896 0.77749 1.21045 1.21843 1.20445 1.19068 0.80564 0.94776 1.42580 0.89189 1.42549 1.03892 1.02108 1.90964 1.20589 0.85594 0.90151 0.99327 1.22340 0.96394 0.90720 0.88155 0.93094 1.22390 0.79061 0.99014 1.03564 1.47920 1.09348 1.71371 1.05863 1.20404 0.89805 0.77488 0.82977 1.90794 1.60030 1.47280 1.40811 1.20051 0.95094 1.05259 0.89716 1.22880 0.96801 0.97655 0.96748 1.22659 1.03836 1.05166 0.93496 1.26016 0.94116 0.94654 0.99698 1.84906 1.39799 1.45527 1.26060 1.73955 1.17666 1.20894 0.90726 1.22034 0.92208 0.99983 0.87617 1.22504 1.01045 0.98566 0.98403 1.22141 0.83018 0.96028 0.99373 1.86420 1.27071 1.72005 1.43413 0.93154 0.80261 0.94685 0.93964 0.89593 0.88701 0.86711 0.87075 0.81144 0.76766 0.91129 0.90031 0.89701 0.89553 0.89251 0.93549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -30.67 13.97 55.49 0.78 -29.89 16 2 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16 3 Si 0.89 23.64 27.74 -169.99 -4.71 18.93 16 4 H -0.28 -7.46 7.11 56.52 0.40 -7.06 16 5 H -0.29 -7.78 7.11 56.52 0.40 -7.38 16 6 H -0.28 -7.16 6.52 56.52 0.37 -6.80 16 7 C -0.24 -7.23 10.47 -15.06 -0.16 -7.39 16 8 H 0.09 2.85 8.06 -52.49 -0.42 2.43 16 9 N -0.75 -19.53 5.29 -59.91 -0.32 -19.85 16 10 C 0.17 3.62 5.95 -4.04 -0.02 3.60 16 11 C 0.08 1.48 2.73 -25.78 -0.07 1.41 16 12 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 13 C 0.08 1.16 4.86 -3.83 -0.02 1.14 16 14 N -0.61 -7.01 2.19 -172.48 -0.38 -7.39 16 15 C 0.51 6.62 7.62 -10.99 -0.08 6.54 16 16 O -0.51 -9.28 15.03 5.55 0.08 -9.19 16 17 C -0.06 -0.54 4.63 -29.04 -0.13 -0.67 16 18 C 0.02 0.21 6.10 -82.10 -0.50 -0.29 16 19 C -0.23 -1.76 11.12 -39.38 -0.44 -2.20 16 20 C -0.06 -0.46 12.30 29.74 0.37 -0.09 16 21 O 0.11 1.25 11.20 17.18 0.19 1.44 16 22 N -0.33 -4.69 11.48 33.42 0.38 -4.31 16 23 C 0.10 0.76 6.00 -3.20 -0.02 0.74 16 24 C -0.17 -1.40 5.79 -27.17 -0.16 -1.55 16 25 C 0.07 0.87 6.37 36.42 0.23 1.10 16 26 O -0.37 -6.32 9.19 -26.54 -0.24 -6.56 16 27 H 0.26 8.04 8.31 -40.82 -0.34 7.70 16 28 H 0.36 9.49 5.39 -40.82 -0.22 9.27 16 29 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.09 1.06 8.11 -51.93 -0.42 0.64 16 32 H 0.09 1.44 7.27 -51.93 -0.38 1.06 16 33 H 0.11 0.58 8.04 -51.93 -0.42 0.16 16 34 H 0.11 0.79 7.41 -51.93 -0.38 0.40 16 35 H 0.17 0.73 8.06 -52.49 -0.42 0.30 16 36 H 0.22 0.49 8.06 -52.49 -0.42 0.07 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.08 0.40 5.87 -51.93 -0.30 0.09 16 39 H 0.08 0.81 8.01 -51.93 -0.42 0.39 16 40 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.05 0.58 7.40 -51.93 -0.38 0.19 16 LS Contribution 345.10 15.07 5.20 5.20 Total: -1.00 -39.79 345.10 -6.02 -45.81 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -5.90 Total: 3.49 kcal Atomic # 6 Polarization: 3.44 SS G_CDS: -1.10 Total: 2.34 kcal Atomic # 7 Polarization: -61.91 SS G_CDS: 0.46 Total: -61.44 kcal Atomic # 8 Polarization: -14.35 SS G_CDS: 0.03 Total: -14.32 kcal Atomic # 14 Polarization: 23.64 SS G_CDS: -4.71 Total: 18.93 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -39.79 -6.02 -45.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200153171.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.480 kcal (2) G-P(sol) polarization free energy of solvation -39.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds