Wall clock time and date at job start Fri Apr 10 2020 17:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86799 * 120.00003 * 2 1 4 4 H 1.48494 * 109.47399 * 270.00576 * 3 2 1 5 5 H 1.48501 * 109.47004 * 30.01160 * 3 2 1 6 6 H 1.48507 * 109.46830 * 150.00313 * 3 2 1 7 7 C 1.38816 * 119.99708 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00225 * 359.97438 * 7 2 1 9 9 N 1.36936 * 119.99693 * 179.97438 * 7 2 1 10 10 C 1.46500 * 119.99909 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47127 * 180.02562 * 10 9 7 12 12 H 1.09003 * 109.46322 * 59.99467 * 11 10 9 13 13 C 1.54800 * 109.46885 * 179.97438 * 11 10 9 14 14 N 1.45127 * 109.53703 * 187.88705 * 13 11 10 15 15 C 1.34774 * 118.75534 * 90.68610 * 14 13 11 16 16 O 1.21288 * 120.00266 * 0.02562 * 15 14 13 17 17 C 1.50696 * 119.99789 * 180.02562 * 15 14 13 18 18 C 1.50704 * 109.47346 * 180.02562 * 17 15 14 19 19 C 1.41375 * 126.80530 * 124.99657 * 18 17 15 20 20 C 1.35453 * 103.98973 * 180.02562 * 19 18 17 21 21 O 1.34038 * 106.44132 * 0.02562 * 20 19 18 22 22 N 1.20922 * 111.57141 * 359.70710 * 21 20 19 23 23 C 1.47504 * 122.48426 * 270.71448 * 14 13 11 24 24 C 1.53569 * 111.03023 * 41.62202 * 23 14 13 25 25 C 1.51540 * 109.57768 * 39.98490 * 24 23 14 26 26 O 1.38015 * 109.46831 * 300.00318 * 11 10 9 27 27 H 0.97002 * 119.99651 * 359.97438 * 1 2 3 28 28 H 0.97001 * 119.99953 * 0.02562 * 9 7 2 29 29 H 1.08996 * 109.46768 * 60.00350 * 10 9 7 30 30 H 1.08995 * 109.46917 * 300.00150 * 10 9 7 31 31 H 1.09001 * 109.46022 * 67.86813 * 13 11 10 32 32 H 1.09000 * 109.45413 * 307.90099 * 13 11 10 33 33 H 1.09002 * 109.47363 * 299.99768 * 17 15 14 34 34 H 1.09005 * 109.47494 * 60.00447 * 17 15 14 35 35 H 1.08002 * 128.00250 * 359.97395 * 19 18 17 36 36 H 1.07996 * 126.77984 * 179.97438 * 20 19 18 37 37 H 1.08998 * 109.16054 * 281.22655 * 23 14 13 38 38 H 1.08995 * 109.12072 * 161.99615 * 23 14 13 39 39 H 1.09003 * 109.45722 * 279.95276 * 24 23 14 40 40 H 1.08997 * 109.45202 * 160.01296 * 24 23 14 41 41 H 1.08997 * 109.59138 * 148.81755 * 25 24 23 42 42 H 1.08990 * 109.59168 * 28.37745 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4478 2.6526 0.7003 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2022 -0.0011 10 6 4.1121 -2.4710 -0.0011 11 6 5.6164 -2.1914 -0.0011 12 1 5.8795 -1.6197 0.8889 13 6 6.3903 -3.5320 -0.0004 14 7 7.8062 -3.2750 0.1873 15 6 8.3009 -3.2545 1.4408 16 8 7.5662 -3.4493 2.3860 17 6 9.7669 -2.9897 1.6680 18 6 10.0600 -3.0213 3.1459 19 6 11.0226 -3.8227 3.8015 20 6 10.8948 -3.4857 5.1072 21 8 9.9263 -2.5610 5.1673 22 7 9.4798 -2.3129 4.0713 23 6 8.7242 -3.0346 -0.9420 24 6 8.0756 -2.1247 -1.9955 25 6 7.2900 -1.0282 -1.3049 26 8 5.9497 -1.4676 -1.1279 27 1 -0.4850 0.8401 0.0004 28 1 3.8646 -0.3622 -0.0007 29 1 3.8484 -3.0426 -0.8908 30 1 3.8491 -3.0423 0.8891 31 1 6.2366 -4.0405 -0.9522 32 1 6.0249 -4.1617 0.8108 33 1 10.3568 -3.7556 1.1646 34 1 10.0256 -2.0097 1.2669 35 1 11.7019 -4.5386 3.3629 36 1 11.4608 -3.8841 5.9363 37 1 8.9821 -3.9882 -1.4027 38 1 9.6320 -2.5601 -0.5694 39 1 7.4042 -2.7139 -2.6202 40 1 8.8518 -1.6787 -2.6172 41 1 7.3011 -0.1281 -1.9195 42 1 7.7359 -0.8154 -0.3334 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001200153171.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:45 Heat of formation + Delta-G solvation = -15.744971 kcal Electronic energy + Delta-G solvation = -26090.787660 eV Core-core repulsion = 22267.414932 eV Total energy + Delta-G solvation = -3823.372728 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.152 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -45.86755 -41.71428 -39.80997 -37.06761 -36.34888 -35.65243 -34.37286 -33.03574 -32.62491 -31.38668 -29.94823 -27.75194 -26.66204 -24.41761 -24.02777 -23.08424 -22.38227 -22.27366 -20.05880 -19.84803 -18.78908 -18.65749 -18.17259 -17.76304 -17.59225 -17.07874 -16.55749 -16.21827 -16.11164 -15.42692 -15.20224 -14.95619 -14.89144 -14.56001 -14.25645 -14.02689 -13.98917 -13.77961 -13.57951 -13.33706 -13.21101 -12.88272 -12.62244 -12.40024 -12.19912 -12.15104 -12.03772 -11.86820 -11.53850 -11.24417 -11.06662 -10.80184 -10.61590 -10.51857 -9.70310 -9.36344 -8.07712 -5.40830 0.70369 1.27317 1.32213 1.35724 1.43190 1.48405 1.93804 2.43764 2.54445 2.63903 3.16773 3.23543 3.40047 3.47185 3.71817 3.81989 3.93476 3.99891 4.03517 4.16686 4.20021 4.27249 4.36593 4.42574 4.43797 4.45319 4.60497 4.66464 4.74223 4.81335 4.84745 4.88165 5.02166 5.10746 5.18490 5.21101 5.48527 5.68339 6.15917 6.21473 6.65937 7.01320 7.06711 7.44172 7.77117 7.97615 9.13860 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.015985 B = 0.003585 C = 0.003221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.248015 B = 7809.497891 C = 8689.560638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.981 5.981 2 C -0.061 4.061 3 Si 0.957 3.043 4 H -0.272 1.272 5 H -0.289 1.289 6 H -0.267 1.267 7 C -0.238 4.238 8 H 0.060 0.940 9 N -0.754 5.754 10 C 0.165 3.835 11 C 0.102 3.898 12 H 0.020 0.980 13 C 0.095 3.905 14 N -0.607 5.607 15 C 0.499 3.501 16 O -0.577 6.577 17 C -0.054 4.054 18 C 0.001 3.999 19 C -0.230 4.230 20 C -0.058 4.058 21 O 0.080 5.920 22 N -0.394 5.394 23 C 0.097 3.903 24 C -0.158 4.158 25 C 0.059 3.941 26 O -0.397 6.397 27 H 0.260 0.740 28 H 0.365 0.635 29 H 0.041 0.959 30 H 0.035 0.965 31 H 0.106 0.894 32 H 0.075 0.925 33 H 0.162 0.838 34 H 0.132 0.868 35 H 0.209 0.791 36 H 0.260 0.740 37 H 0.100 0.900 38 H 0.115 0.885 39 H 0.075 0.925 40 H 0.124 0.876 41 H 0.099 0.901 42 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 35.381 -9.729 -0.134 36.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.631 5.631 2 C -0.252 4.252 3 Si 0.785 3.215 4 H -0.198 1.198 5 H -0.216 1.216 6 H -0.192 1.192 7 C -0.368 4.368 8 H 0.078 0.922 9 N -0.399 5.399 10 C 0.039 3.961 11 C 0.042 3.958 12 H 0.038 0.962 13 C -0.029 4.029 14 N -0.340 5.340 15 C 0.288 3.712 16 O -0.456 6.456 17 C -0.094 4.094 18 C -0.158 4.158 19 C -0.251 4.251 20 C -0.138 4.138 21 O 0.014 5.986 22 N -0.099 5.099 23 C -0.023 4.023 24 C -0.196 4.196 25 C -0.016 4.016 26 O -0.317 6.317 27 H 0.069 0.931 28 H 0.198 0.802 29 H 0.059 0.941 30 H 0.053 0.947 31 H 0.125 0.875 32 H 0.093 0.907 33 H 0.180 0.820 34 H 0.149 0.851 35 H 0.226 0.774 36 H 0.276 0.724 37 H 0.118 0.882 38 H 0.133 0.867 39 H 0.093 0.907 40 H 0.142 0.858 41 H 0.117 0.883 42 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 33.708 -8.985 0.185 34.886 hybrid contribution 0.185 0.435 0.312 0.566 sum 33.893 -8.550 0.497 34.958 Atomic orbital electron populations 1.69875 1.06883 1.26782 1.59603 1.25465 0.96171 1.01115 1.02499 0.85375 0.78046 0.79816 0.78304 1.19780 1.21573 1.19243 1.19080 0.82413 0.93801 1.41542 0.92178 1.42571 1.02597 1.03896 1.90864 1.20734 0.88212 0.88204 0.98989 1.21888 0.94115 0.92493 0.87302 0.96227 1.22050 0.80706 0.96407 1.03788 1.48042 1.08530 1.70439 1.06964 1.21245 0.91419 0.76102 0.82459 1.90771 1.61895 1.50132 1.42824 1.20243 0.92144 1.07861 0.89136 1.23518 0.97076 0.97594 0.97583 1.23144 1.03554 1.05121 0.93261 1.26975 0.92561 0.92888 1.01385 1.84824 1.41161 1.47035 1.25609 1.73955 1.20196 1.23716 0.92010 1.22448 0.92028 1.01705 0.86133 1.22445 1.01334 0.97288 0.98521 1.22493 0.81221 0.98059 0.99852 1.86342 1.30401 1.72357 1.42554 0.93134 0.80184 0.94113 0.94723 0.87539 0.90664 0.82026 0.85053 0.77437 0.72405 0.88163 0.86664 0.90650 0.85799 0.88287 0.94019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -65.97 13.97 21.65 0.30 -65.67 16 2 C -0.06 -3.85 5.50 84.86 0.47 -3.38 16 3 Si 0.96 49.56 27.74 68.60 1.90 51.47 16 4 H -0.27 -13.51 7.11 99.48 0.71 -12.80 16 5 H -0.29 -14.79 7.11 99.48 0.71 -14.08 16 6 H -0.27 -13.17 6.52 99.48 0.65 -12.52 16 7 C -0.24 -14.79 10.47 84.03 0.88 -13.91 16 8 H 0.06 4.01 8.06 -2.91 -0.02 3.99 16 9 N -0.75 -40.19 5.29 -343.46 -1.82 -42.01 16 10 C 0.17 7.24 5.95 86.38 0.51 7.76 16 11 C 0.10 3.66 2.73 31.21 0.09 3.74 16 12 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 13 C 0.10 2.62 4.86 87.25 0.42 3.05 16 14 N -0.61 -12.65 2.19 -817.99 -1.79 -14.45 16 15 C 0.50 12.43 7.62 87.66 0.67 13.10 16 16 O -0.58 -21.50 15.03 -3.05 -0.05 -21.54 16 17 C -0.05 -0.78 4.63 29.10 0.13 -0.65 16 18 C 0.00 0.03 6.10 43.58 0.27 0.29 16 19 C -0.23 -2.84 11.12 22.40 0.25 -2.59 16 20 C -0.06 -0.71 12.30 67.18 0.83 0.12 16 21 O 0.08 1.88 11.20 71.65 0.80 2.69 16 22 N -0.39 -11.33 11.48 -49.56 -0.57 -11.90 16 23 C 0.10 0.96 6.00 86.38 0.52 1.48 16 24 C -0.16 -1.99 5.79 30.31 0.18 -1.81 16 25 C 0.06 1.32 6.37 71.50 0.46 1.78 16 26 O -0.40 -13.26 9.19 -117.87 -1.08 -14.34 16 27 H 0.26 16.51 8.31 -92.71 -0.77 15.74 16 28 H 0.37 19.14 5.39 -92.71 -0.50 18.64 16 29 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.11 2.46 8.11 -2.39 -0.02 2.45 16 32 H 0.07 2.37 7.27 -2.39 -0.02 2.36 16 33 H 0.16 0.73 8.04 -2.39 -0.02 0.71 16 34 H 0.13 1.36 7.41 -2.38 -0.02 1.34 16 35 H 0.21 0.76 8.06 -2.91 -0.02 0.74 16 36 H 0.26 0.31 8.06 -2.91 -0.02 0.29 16 37 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 38 H 0.12 0.42 5.87 -2.39 -0.01 0.40 16 39 H 0.07 1.16 8.01 -2.39 -0.02 1.14 16 40 H 0.12 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 42 H 0.04 0.96 7.40 -2.39 -0.02 0.94 16 Total: -1.00 -94.09 345.10 3.84 -90.24 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: 0.48 Total: 16.54 kcal Atomic # 6 Polarization: 3.30 SS G_CDS: 5.66 Total: 8.96 kcal Atomic # 7 Polarization: -130.14 SS G_CDS: -3.88 Total: -134.02 kcal Atomic # 8 Polarization: -32.87 SS G_CDS: -0.33 Total: -33.20 kcal Atomic # 14 Polarization: 49.56 SS G_CDS: 1.90 Total: 51.47 kcal Total: -94.09 3.84 -90.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200153171.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.500 kcal (2) G-P(sol) polarization free energy of solvation -94.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds