Wall clock time and date at job start Fri Apr 10 2020 17:59:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30012 * 127.33192 * 2 1 4 4 O 1.20664 * 112.30199 * 179.97438 * 3 2 1 5 5 C 1.33493 * 113.15066 * 359.97438 * 4 3 2 6 6 C 1.37356 * 106.34762 * 359.74939 * 5 4 3 7 7 C 1.47392 * 128.56820 * 180.26087 * 6 5 4 8 8 O 1.21611 * 120.00237 * 216.27725 * 7 6 5 9 9 N 1.34776 * 120.00234 * 36.27129 * 7 6 5 10 10 C 1.47510 * 118.75501 * 5.35932 * 9 7 6 11 11 C 1.53951 * 110.82010 * 138.25041 * 10 9 7 12 12 C 1.51532 * 109.72598 * 320.30527 * 11 10 9 13 13 O 1.42147 * 108.76605 * 91.29605 * 12 11 10 14 14 C 1.38021 * 119.43812 * 272.78090 * 13 12 11 15 15 H 1.08999 * 109.46361 * 303.42628 * 14 13 12 16 16 C 1.53005 * 109.46764 * 183.42959 * 14 13 12 17 17 N 1.46501 * 109.47107 * 64.98822 * 16 14 13 18 18 C 1.36937 * 119.99873 * 179.97438 * 17 16 14 19 19 H 1.07994 * 120.00246 * 0.02562 * 18 17 16 20 20 C 1.38812 * 119.99839 * 179.97438 * 18 17 16 21 21 N 1.31612 * 120.00155 * 180.02562 * 20 18 17 22 22 Si 1.86801 * 120.00021 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.47344 * 89.99935 * 22 20 18 24 24 H 1.48501 * 109.47022 * 210.00283 * 22 20 18 25 25 H 1.48507 * 109.47111 * 329.99660 * 22 20 18 26 26 C 1.45118 * 118.75726 * 185.62159 * 9 7 6 27 27 H 1.08998 * 109.47482 * 90.02648 * 1 2 3 28 28 H 1.09000 * 109.47450 * 330.02043 * 1 2 3 29 29 H 1.09011 * 109.46778 * 210.02409 * 1 2 3 30 30 H 1.08008 * 126.82104 * 179.97438 * 5 4 3 31 31 H 1.09001 * 109.16460 * 258.76962 * 10 9 7 32 32 H 1.08999 * 109.16654 * 17.96759 * 10 9 7 33 33 H 1.08999 * 109.45630 * 200.17363 * 11 10 9 34 34 H 1.08993 * 109.29620 * 80.33392 * 11 10 9 35 35 H 1.08996 * 109.59301 * 331.50726 * 12 11 10 36 36 H 1.09006 * 109.58363 * 211.08192 * 12 11 10 37 37 H 1.08998 * 109.46623 * 184.98608 * 16 14 13 38 38 H 1.08999 * 109.47163 * 304.98472 * 16 14 13 39 39 H 0.96998 * 119.99731 * 359.97438 * 17 16 14 40 40 H 0.97003 * 120.00407 * 179.97438 * 21 20 18 41 41 H 1.09000 * 109.46461 * 29.31748 * 26 9 7 42 42 H 1.09007 * 109.45868 * 149.27891 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2954 1.0338 0.0000 4 8 3.4608 0.7209 0.0005 5 6 3.6494 -0.6007 0.0015 6 6 2.3992 -1.1696 0.0073 7 6 2.0401 -2.5991 0.0159 8 8 1.0672 -2.9854 -0.6030 9 7 2.7901 -3.4782 0.7096 10 6 3.8918 -2.9660 1.5462 11 6 3.9424 -3.7041 2.8963 12 6 2.5341 -3.9369 3.4050 13 8 2.0828 -5.2017 2.9391 14 6 1.4758 -5.2921 1.7028 15 1 0.6181 -4.6203 1.6693 16 6 1.0071 -6.7297 1.4687 17 7 -0.0373 -7.0670 2.4391 18 6 -0.6121 -8.3097 2.4221 19 1 -0.2953 -9.0413 1.6936 20 6 -1.6013 -8.6295 3.3420 21 7 -2.1534 -9.8241 3.3260 22 14 -2.1487 -7.3643 4.6026 23 1 -3.2707 -6.5656 4.0472 24 1 -2.5978 -8.0575 5.8367 25 1 -1.0128 -6.4641 4.9260 26 6 2.4870 -4.8931 0.6007 27 1 -0.3634 -0.0005 -1.0276 28 1 -0.3634 0.8902 0.5135 29 1 -0.3633 -0.8899 0.5143 30 1 4.5968 -1.1194 0.0017 31 1 4.8362 -3.1084 1.0208 32 1 3.7400 -1.9016 1.7255 33 1 4.4945 -3.1027 3.6185 34 1 4.4437 -4.6629 2.7641 35 1 1.8758 -3.1532 3.0300 36 1 2.5331 -3.9273 4.4950 37 1 0.6079 -6.8217 0.4586 38 1 1.8495 -7.4107 1.5899 39 1 -0.3215 -6.4100 3.0937 40 1 -2.8444 -10.0477 3.9690 41 1 2.0558 -5.0978 -0.3792 42 1 3.4032 -5.4712 0.7220 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201294225.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:55 Heat of formation + Delta-G solvation = 13.630169 kcal Electronic energy + Delta-G solvation = -26432.247972 eV Core-core repulsion = 22610.149046 eV Total energy + Delta-G solvation = -3822.098926 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.152 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -45.31228 -40.72889 -38.62876 -35.94583 -34.91565 -34.77685 -33.03545 -32.50694 -31.18124 -29.46822 -28.88379 -27.00643 -25.96152 -24.25523 -22.31838 -22.04291 -21.43574 -21.10314 -19.96857 -18.22826 -17.95637 -17.68110 -17.17963 -16.64460 -16.59291 -15.98541 -15.30710 -15.01913 -14.42638 -14.30242 -14.02500 -13.77687 -13.57887 -13.50128 -13.43230 -12.95914 -12.83748 -12.65503 -12.51849 -12.25239 -11.97735 -11.66460 -11.57831 -11.25247 -10.98072 -10.83001 -10.51466 -10.31849 -10.23538 -10.07256 -9.97877 -9.60844 -9.54166 -8.85582 -8.79448 -7.16780 -5.71171 -3.05754 0.71434 1.44217 2.31853 2.63772 2.83341 3.43655 3.48373 3.50134 3.64818 3.77112 3.90155 4.22064 4.36574 4.50450 4.51000 4.65982 4.72921 4.90657 4.98669 5.10844 5.15734 5.23412 5.25383 5.26561 5.30371 5.37884 5.43123 5.58958 5.65298 5.74054 5.79530 5.80731 5.91837 5.96745 6.27347 6.54561 6.65858 6.92284 7.77614 7.80706 7.83326 8.04463 8.47777 9.27312 9.99881 10.20399 11.47295 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.019943 B = 0.003629 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.695844 B = 7712.822977 C = 8140.387570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.068 3.932 3 N -0.358 5.358 4 O 0.098 5.902 5 C -0.013 4.013 6 C -0.247 4.247 7 C 0.586 3.414 8 O -0.513 6.513 9 N -0.602 5.602 10 C 0.096 3.904 11 C -0.165 4.165 12 C 0.072 3.928 13 O -0.371 6.371 14 C 0.083 3.917 15 H 0.053 0.947 16 C 0.171 3.829 17 N -0.750 5.750 18 C -0.241 4.241 19 H 0.091 0.909 20 C 0.004 3.996 21 N -0.936 5.936 22 Si 0.882 3.118 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.275 1.275 26 C 0.084 3.916 27 H 0.089 0.911 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.227 0.773 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.046 0.954 36 H 0.090 0.910 37 H 0.044 0.956 38 H 0.036 0.964 39 H 0.364 0.636 40 H 0.259 0.741 41 H 0.097 0.903 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.880 21.723 -4.990 27.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.094 4.094 3 N -0.065 5.065 4 O 0.038 5.962 5 C -0.095 4.095 6 C -0.254 4.254 7 C 0.372 3.628 8 O -0.388 6.388 9 N -0.335 5.335 10 C -0.026 4.026 11 C -0.204 4.204 12 C -0.005 4.005 13 O -0.289 6.289 14 C 0.023 3.977 15 H 0.071 0.929 16 C 0.043 3.957 17 N -0.396 5.396 18 C -0.371 4.371 19 H 0.108 0.892 20 C -0.191 4.191 21 N -0.584 5.584 22 Si 0.713 3.287 23 H -0.212 1.212 24 H -0.218 1.218 25 H -0.201 1.201 26 C -0.039 4.039 27 H 0.107 0.893 28 H 0.099 0.901 29 H 0.107 0.893 30 H 0.243 0.757 31 H 0.090 0.910 32 H 0.102 0.898 33 H 0.105 0.895 34 H 0.104 0.896 35 H 0.065 0.935 36 H 0.108 0.892 37 H 0.062 0.938 38 H 0.054 0.946 39 H 0.196 0.804 40 H 0.069 0.931 41 H 0.115 0.885 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 16.165 22.420 -5.284 28.141 hybrid contribution -0.300 0.233 0.803 0.888 sum 15.865 22.653 -4.481 28.017 Atomic orbital electron populations 1.20248 0.84771 1.04159 1.04291 1.24887 0.98996 0.86193 0.99354 1.73683 0.89202 1.23460 1.20187 1.84583 1.21594 1.22944 1.67100 1.26510 1.00187 0.83966 0.98860 1.22346 0.93088 0.95688 1.14296 1.17051 0.82808 0.83362 0.79552 1.90868 1.25918 1.78814 1.43239 1.47780 1.32859 1.07088 1.45815 1.22348 0.89419 0.99028 0.91840 1.22552 0.99680 1.02319 0.95803 1.22126 0.92967 0.86257 0.99157 1.86436 1.77411 1.30050 1.34972 1.22352 0.93167 0.99527 0.82615 0.92884 1.20591 0.91801 0.89592 0.93717 1.42569 1.44354 1.14658 1.37981 1.19058 1.14491 0.89399 1.14172 0.89154 1.24636 0.98952 0.96404 0.99113 1.69699 1.30066 1.19598 1.39016 0.86555 0.78609 0.81584 0.81974 1.21163 1.21757 1.20069 1.22467 1.00673 0.78925 1.01842 0.89271 0.90140 0.89350 0.75727 0.90981 0.89835 0.89485 0.89599 0.93550 0.89183 0.93789 0.94609 0.80358 0.93115 0.88456 0.89258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.75 10.49 36.01 0.38 -0.37 16 2 C 0.07 0.74 7.59 -79.77 -0.61 0.13 16 3 N -0.36 -3.86 12.01 34.78 0.42 -3.44 16 4 O 0.10 0.84 11.06 18.65 0.21 1.04 16 5 C -0.01 -0.09 9.99 30.41 0.30 0.22 16 6 C -0.25 -2.50 5.50 -102.90 -0.57 -3.06 16 7 C 0.59 7.27 7.59 -12.53 -0.10 7.18 16 8 O -0.51 -8.36 16.60 5.27 0.09 -8.27 16 9 N -0.60 -6.38 2.18 -173.52 -0.38 -6.76 16 10 C 0.10 0.66 4.91 -2.99 -0.01 0.64 16 11 C -0.17 -1.30 5.79 -26.98 -0.16 -1.45 16 12 C 0.07 0.84 6.37 36.41 0.23 1.07 16 13 O -0.37 -5.96 9.38 -26.56 -0.25 -6.21 16 14 C 0.08 1.36 2.68 -25.78 -0.07 1.29 16 15 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 16 C 0.17 3.40 5.92 -4.04 -0.02 3.38 16 17 N -0.75 -18.75 5.34 -59.91 -0.32 -19.07 16 18 C -0.24 -7.06 10.47 -15.06 -0.16 -7.22 16 19 H 0.09 2.79 8.06 -52.49 -0.42 2.36 16 20 C 0.00 0.14 5.50 -17.43 -0.10 0.04 16 21 N -0.94 -30.04 13.97 55.49 0.78 -29.26 16 22 Si 0.88 22.90 27.74 -169.99 -4.71 18.18 16 23 H -0.28 -7.33 7.11 56.52 0.40 -6.93 16 24 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 25 H -0.27 -6.81 6.52 56.52 0.37 -6.44 16 26 C 0.08 1.05 4.82 -3.83 -0.02 1.04 16 27 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.09 0.93 8.14 -51.92 -0.42 0.51 16 30 H 0.23 0.49 7.05 -52.48 -0.37 0.12 16 31 H 0.07 0.31 7.95 -51.93 -0.41 -0.10 16 32 H 0.08 0.48 5.16 -51.93 -0.27 0.21 16 33 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.09 0.74 8.01 -51.93 -0.42 0.32 16 35 H 0.05 0.56 7.41 -51.93 -0.38 0.17 16 36 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.36 9.07 5.51 -40.82 -0.23 8.85 16 40 H 0.26 7.90 8.31 -40.82 -0.34 7.56 16 41 H 0.10 1.30 7.36 -51.93 -0.38 0.92 16 42 H 0.09 0.97 8.11 -51.93 -0.42 0.55 16 LS Contribution 344.69 15.07 5.19 5.19 Total: -1.00 -36.58 344.69 -5.72 -42.30 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -5.85 Total: 3.41 kcal Atomic # 6 Polarization: 3.77 SS G_CDS: -0.89 Total: 2.88 kcal Atomic # 7 Polarization: -59.02 SS G_CDS: 0.49 Total: -58.53 kcal Atomic # 8 Polarization: -13.48 SS G_CDS: 0.04 Total: -13.44 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -4.71 Total: 18.18 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -36.58 -5.72 -42.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201294225.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.930 kcal (2) G-P(sol) polarization free energy of solvation -36.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds