Wall clock time and date at job start Fri Apr 10 2020 17:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30012 * 127.33192 * 2 1 4 4 O 1.20664 * 112.30199 * 179.97438 * 3 2 1 5 5 C 1.33493 * 113.15066 * 359.97438 * 4 3 2 6 6 C 1.37356 * 106.34762 * 359.74939 * 5 4 3 7 7 C 1.47392 * 128.56820 * 180.26087 * 6 5 4 8 8 O 1.21611 * 120.00237 * 216.27725 * 7 6 5 9 9 N 1.34776 * 120.00234 * 36.27129 * 7 6 5 10 10 C 1.47510 * 118.75501 * 5.35932 * 9 7 6 11 11 C 1.53951 * 110.82010 * 138.25041 * 10 9 7 12 12 C 1.51532 * 109.72598 * 320.30527 * 11 10 9 13 13 O 1.42147 * 108.76605 * 91.29605 * 12 11 10 14 14 C 1.38021 * 119.43812 * 272.78090 * 13 12 11 15 15 H 1.08999 * 109.46361 * 303.42628 * 14 13 12 16 16 C 1.53005 * 109.46764 * 183.42959 * 14 13 12 17 17 N 1.46501 * 109.47107 * 64.98822 * 16 14 13 18 18 C 1.36937 * 119.99873 * 179.97438 * 17 16 14 19 19 H 1.07994 * 120.00246 * 0.02562 * 18 17 16 20 20 C 1.38812 * 119.99839 * 179.97438 * 18 17 16 21 21 N 1.31612 * 120.00155 * 180.02562 * 20 18 17 22 22 Si 1.86801 * 120.00021 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.47344 * 89.99935 * 22 20 18 24 24 H 1.48501 * 109.47022 * 210.00283 * 22 20 18 25 25 H 1.48507 * 109.47111 * 329.99660 * 22 20 18 26 26 C 1.45118 * 118.75726 * 185.62159 * 9 7 6 27 27 H 1.08998 * 109.47482 * 90.02648 * 1 2 3 28 28 H 1.09000 * 109.47450 * 330.02043 * 1 2 3 29 29 H 1.09011 * 109.46778 * 210.02409 * 1 2 3 30 30 H 1.08008 * 126.82104 * 179.97438 * 5 4 3 31 31 H 1.09001 * 109.16460 * 258.76962 * 10 9 7 32 32 H 1.08999 * 109.16654 * 17.96759 * 10 9 7 33 33 H 1.08999 * 109.45630 * 200.17363 * 11 10 9 34 34 H 1.08993 * 109.29620 * 80.33392 * 11 10 9 35 35 H 1.08996 * 109.59301 * 331.50726 * 12 11 10 36 36 H 1.09006 * 109.58363 * 211.08192 * 12 11 10 37 37 H 1.08998 * 109.46623 * 184.98608 * 16 14 13 38 38 H 1.08999 * 109.47163 * 304.98472 * 16 14 13 39 39 H 0.96998 * 119.99731 * 359.97438 * 17 16 14 40 40 H 0.97003 * 120.00407 * 179.97438 * 21 20 18 41 41 H 1.09000 * 109.46461 * 29.31748 * 26 9 7 42 42 H 1.09007 * 109.45868 * 149.27891 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2954 1.0338 0.0000 4 8 3.4608 0.7209 0.0005 5 6 3.6494 -0.6007 0.0015 6 6 2.3992 -1.1696 0.0073 7 6 2.0401 -2.5991 0.0159 8 8 1.0672 -2.9854 -0.6030 9 7 2.7901 -3.4782 0.7096 10 6 3.8918 -2.9660 1.5462 11 6 3.9424 -3.7041 2.8963 12 6 2.5341 -3.9369 3.4050 13 8 2.0828 -5.2017 2.9391 14 6 1.4758 -5.2921 1.7028 15 1 0.6181 -4.6203 1.6693 16 6 1.0071 -6.7297 1.4687 17 7 -0.0373 -7.0670 2.4391 18 6 -0.6121 -8.3097 2.4221 19 1 -0.2953 -9.0413 1.6936 20 6 -1.6013 -8.6295 3.3420 21 7 -2.1534 -9.8241 3.3260 22 14 -2.1487 -7.3643 4.6026 23 1 -3.2707 -6.5656 4.0472 24 1 -2.5978 -8.0575 5.8367 25 1 -1.0128 -6.4641 4.9260 26 6 2.4870 -4.8931 0.6007 27 1 -0.3634 -0.0005 -1.0276 28 1 -0.3634 0.8902 0.5135 29 1 -0.3633 -0.8899 0.5143 30 1 4.5968 -1.1194 0.0017 31 1 4.8362 -3.1084 1.0208 32 1 3.7400 -1.9016 1.7255 33 1 4.4945 -3.1027 3.6185 34 1 4.4437 -4.6629 2.7641 35 1 1.8758 -3.1532 3.0300 36 1 2.5331 -3.9273 4.4950 37 1 0.6079 -6.8217 0.4586 38 1 1.8495 -7.4107 1.5899 39 1 -0.3215 -6.4100 3.0937 40 1 -2.8444 -10.0477 3.9690 41 1 2.0558 -5.0978 -0.3792 42 1 3.4032 -5.4712 0.7220 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001201294225.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:54 Heat of formation + Delta-G solvation = -13.251041 kcal Electronic energy + Delta-G solvation = -26433.413629 eV Core-core repulsion = 22610.149046 eV Total energy + Delta-G solvation = -3823.264583 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.152 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -46.03302 -41.67850 -39.71830 -37.08967 -36.39494 -35.61726 -34.38139 -33.30659 -32.98269 -30.62368 -29.78463 -28.06247 -27.03864 -25.49613 -23.86881 -22.93060 -22.54093 -22.10464 -20.78299 -19.81374 -18.97719 -18.71462 -17.96397 -17.69476 -17.65607 -17.01530 -16.47853 -16.28125 -15.94493 -15.43975 -15.03565 -14.88828 -14.83065 -14.53844 -14.33581 -14.23848 -13.97789 -13.79455 -13.65952 -13.49217 -13.25322 -12.87662 -12.66432 -12.42235 -12.37840 -12.19543 -12.04192 -11.84200 -11.54088 -11.29184 -11.04234 -10.98903 -10.69052 -10.62401 -9.75656 -9.32755 -8.04759 -5.37646 0.08863 0.67499 1.34854 1.37461 1.45679 1.52025 1.86422 2.19768 2.46345 2.66000 2.92610 3.24830 3.27169 3.44777 3.53199 3.76076 3.84110 3.92172 4.01892 4.07118 4.21697 4.25118 4.33640 4.40759 4.48079 4.50093 4.57435 4.65655 4.66541 4.69332 4.80590 4.86362 5.02596 5.06136 5.10519 5.16941 5.43427 5.72214 6.10689 6.19008 6.67783 6.92281 7.04787 7.16274 7.80844 8.00169 9.16721 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.019943 B = 0.003629 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.695844 B = 7712.822977 C = 8140.387570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.048 3.952 3 N -0.376 5.376 4 O 0.104 5.896 5 C 0.031 3.969 6 C -0.277 4.277 7 C 0.585 3.415 8 O -0.566 6.566 9 N -0.597 5.597 10 C 0.089 3.911 11 C -0.157 4.157 12 C 0.061 3.939 13 O -0.397 6.397 14 C 0.099 3.901 15 H 0.026 0.974 16 C 0.165 3.835 17 N -0.755 5.755 18 C -0.235 4.235 19 H 0.062 0.938 20 C -0.061 4.061 21 N -0.982 5.982 22 Si 0.952 3.048 23 H -0.280 1.280 24 H -0.290 1.290 25 H -0.257 1.257 26 C 0.096 3.904 27 H 0.088 0.912 28 H 0.092 0.908 29 H 0.072 0.928 30 H 0.278 0.722 31 H 0.115 0.885 32 H 0.100 0.900 33 H 0.121 0.879 34 H 0.083 0.917 35 H 0.037 0.963 36 H 0.097 0.903 37 H 0.043 0.957 38 H 0.040 0.960 39 H 0.364 0.636 40 H 0.259 0.741 41 H 0.084 0.916 42 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.184 24.317 -4.252 31.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.113 4.113 3 N -0.083 5.083 4 O 0.045 5.955 5 C -0.051 4.051 6 C -0.285 4.285 7 C 0.374 3.626 8 O -0.446 6.446 9 N -0.328 5.328 10 C -0.032 4.032 11 C -0.195 4.195 12 C -0.015 4.015 13 O -0.316 6.316 14 C 0.038 3.962 15 H 0.044 0.956 16 C 0.038 3.962 17 N -0.400 5.400 18 C -0.366 4.366 19 H 0.080 0.920 20 C -0.253 4.253 21 N -0.632 5.632 22 Si 0.780 3.220 23 H -0.207 1.207 24 H -0.216 1.216 25 H -0.182 1.182 26 C -0.028 4.028 27 H 0.107 0.893 28 H 0.111 0.889 29 H 0.091 0.909 30 H 0.293 0.707 31 H 0.133 0.867 32 H 0.118 0.882 33 H 0.139 0.861 34 H 0.101 0.899 35 H 0.056 0.944 36 H 0.115 0.885 37 H 0.060 0.940 38 H 0.058 0.942 39 H 0.197 0.803 40 H 0.068 0.932 41 H 0.103 0.897 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 19.535 25.070 -4.542 32.105 hybrid contribution -1.226 -0.586 0.549 1.465 sum 18.309 24.484 -3.994 30.832 Atomic orbital electron populations 1.20212 0.85006 1.03942 1.04239 1.25079 0.99457 0.86878 0.99927 1.73690 0.89892 1.23717 1.20998 1.84565 1.20640 1.23909 1.66433 1.27314 1.00576 0.82747 0.94454 1.22132 0.94558 0.94226 1.17551 1.17362 0.82068 0.84350 0.78826 1.90840 1.28289 1.79790 1.45644 1.47835 1.33394 1.05910 1.45681 1.22751 0.89675 0.99556 0.91186 1.22493 0.96917 1.03036 0.97008 1.22430 0.95248 0.84113 0.99667 1.86359 1.77630 1.32800 1.34790 1.21954 0.93588 0.96102 0.84516 0.95569 1.20755 0.90561 0.92484 0.92375 1.42607 1.45327 1.13107 1.39004 1.19077 1.14163 0.90375 1.12950 0.92042 1.25446 0.99498 0.98597 1.01724 1.69867 1.31118 1.21895 1.40359 0.85441 0.78550 0.79062 0.78982 1.20667 1.21585 1.18225 1.22187 1.00459 0.80698 0.99467 0.89312 0.88904 0.90919 0.70673 0.86703 0.88229 0.86115 0.89873 0.94409 0.88514 0.93967 0.94187 0.80290 0.93228 0.89736 0.86768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.52 10.49 71.24 0.75 -0.77 16 2 C 0.05 1.01 7.59 45.16 0.34 1.35 16 3 N -0.38 -7.37 12.01 -44.77 -0.54 -7.91 16 4 O 0.10 1.42 11.06 76.98 0.85 2.27 16 5 C 0.03 0.27 9.99 67.61 0.68 0.94 16 6 C -0.28 -4.99 5.50 -18.75 -0.10 -5.09 16 7 C 0.59 13.85 7.59 86.65 0.66 14.51 16 8 O -0.57 -18.95 16.60 -4.07 -0.07 -19.02 16 9 N -0.60 -11.12 2.18 -821.14 -1.79 -12.91 16 10 C 0.09 0.76 4.91 86.51 0.42 1.19 16 11 C -0.16 -1.75 5.79 30.43 0.18 -1.58 16 12 C 0.06 1.29 6.37 71.50 0.46 1.74 16 13 O -0.40 -12.27 9.38 -117.94 -1.11 -13.38 16 14 C 0.10 3.19 2.68 31.21 0.08 3.27 16 15 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 16 C 0.16 6.66 5.92 86.38 0.51 7.17 16 17 N -0.76 -38.22 5.34 -343.45 -1.83 -40.05 16 18 C -0.23 -14.09 10.47 84.03 0.88 -13.21 16 19 H 0.06 3.96 8.06 -2.91 -0.02 3.94 16 20 C -0.06 -3.75 5.50 84.86 0.47 -3.29 16 21 N -0.98 -64.70 13.97 21.65 0.30 -64.40 16 22 Si 0.95 47.93 27.74 68.60 1.90 49.83 16 23 H -0.28 -13.82 7.11 99.48 0.71 -13.12 16 24 H -0.29 -14.42 7.11 99.48 0.71 -13.71 16 25 H -0.26 -12.06 6.52 99.48 0.65 -11.41 16 26 C 0.10 2.27 4.82 87.25 0.42 2.69 16 27 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 30 H 0.28 -0.80 7.05 -2.91 -0.02 -0.82 16 31 H 0.12 0.14 7.95 -2.39 -0.02 0.12 16 32 H 0.10 0.58 5.16 -2.39 -0.01 0.56 16 33 H 0.12 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.08 1.06 8.01 -2.39 -0.02 1.04 16 35 H 0.04 0.85 7.41 -2.39 -0.02 0.83 16 36 H 0.10 1.86 8.14 -2.38 -0.02 1.84 16 37 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.36 18.14 5.51 -92.71 -0.51 17.63 16 40 H 0.26 16.18 8.31 -92.71 -0.77 15.41 16 41 H 0.08 2.24 7.36 -2.39 -0.02 2.23 16 42 H 0.11 2.14 8.11 -2.38 -0.02 2.13 16 Total: -1.00 -84.28 344.69 3.93 -80.34 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: 0.48 Total: 16.30 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: 5.74 Total: 8.93 kcal Atomic # 7 Polarization: -121.42 SS G_CDS: -3.86 Total: -125.28 kcal Atomic # 8 Polarization: -29.80 SS G_CDS: -0.32 Total: -30.12 kcal Atomic # 14 Polarization: 47.93 SS G_CDS: 1.90 Total: 49.83 kcal Total: -84.28 3.93 -80.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201294225.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.092 kcal (2) G-P(sol) polarization free energy of solvation -84.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds