Wall clock time and date at job start Fri Apr 10 2020 18:00:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50711 * 1 3 3 C 1.41262 * 128.07288 * 2 1 4 4 N 1.30132 * 106.58466 * 180.24808 * 3 2 1 5 5 O 1.20884 * 111.98300 * 359.76326 * 4 3 2 6 6 C 1.34639 * 111.46999 * 359.97438 * 5 4 3 7 7 C 1.47516 * 126.94512 * 179.97438 * 6 5 4 8 8 O 1.21579 * 119.99679 * 187.19339 * 7 6 5 9 9 N 1.34774 * 119.99760 * 7.19677 * 7 6 5 10 10 C 1.47508 * 118.75622 * 176.89567 * 9 7 6 11 11 C 1.53570 * 111.02931 * 138.38819 * 10 9 7 12 12 C 1.51534 * 109.58290 * 320.02446 * 11 10 9 13 13 O 1.42153 * 108.75332 * 91.40049 * 12 11 10 14 14 C 1.38017 * 119.43953 * 272.76842 * 13 12 11 15 15 H 1.09002 * 109.47115 * 303.43079 * 14 13 12 16 16 C 1.52998 * 109.46813 * 183.43376 * 14 13 12 17 17 N 1.46501 * 109.47152 * 64.99081 * 16 14 13 18 18 C 1.36941 * 119.99602 * 179.72419 * 17 16 14 19 19 H 1.07999 * 120.00136 * 0.27656 * 18 17 16 20 20 C 1.38811 * 119.99275 * 180.27548 * 18 17 16 21 21 N 1.31614 * 120.00430 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99682 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47307 * 59.99513 * 22 20 18 24 24 H 1.48494 * 109.47301 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.46986 * 300.00253 * 22 20 18 26 26 C 1.45117 * 118.76042 * 356.91605 * 9 7 6 27 27 H 1.09002 * 109.46916 * 270.14101 * 1 2 3 28 28 H 1.08997 * 109.46869 * 30.14030 * 1 2 3 29 29 H 1.08998 * 109.46810 * 150.13703 * 1 2 3 30 30 H 1.07992 * 126.70910 * 0.02562 * 3 2 1 31 31 H 1.08992 * 109.16771 * 258.79031 * 10 9 7 32 32 H 1.09005 * 109.16546 * 17.99479 * 10 9 7 33 33 H 1.09004 * 109.45166 * 80.05883 * 11 10 9 34 34 H 1.09007 * 109.45348 * 199.98996 * 11 10 9 35 35 H 1.08997 * 109.58797 * 211.18290 * 12 11 10 36 36 H 1.09004 * 109.58794 * 331.61641 * 12 11 10 37 37 H 1.09000 * 109.46874 * 304.99004 * 16 14 13 38 38 H 1.09007 * 109.46855 * 184.99322 * 16 14 13 39 39 H 0.96998 * 120.00021 * 0.02562 * 17 16 14 40 40 H 0.97006 * 119.99792 * 180.02562 * 21 20 18 41 41 H 1.09001 * 109.46384 * 149.24082 * 26 9 7 42 42 H 1.09007 * 109.44976 * 29.27507 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3782 1.1121 0.0000 4 7 3.5891 0.6354 -0.0054 5 8 3.5995 -0.5734 -0.0040 6 6 2.3509 -1.0770 0.0033 7 6 1.9696 -2.5021 0.0065 8 8 0.8026 -2.8193 -0.1187 9 7 2.9149 -3.4522 0.1482 10 6 2.4963 -4.8650 0.2172 11 6 3.4378 -5.7593 -0.6026 12 6 3.8105 -5.0568 -1.8925 13 8 5.0029 -4.3128 -1.6797 14 6 4.9206 -3.0239 -1.1931 15 1 4.2905 -2.4264 -1.8519 16 6 6.3212 -2.4111 -1.1331 17 7 6.8553 -2.2796 -2.4909 18 6 8.1013 -1.7467 -2.6879 19 1 8.6920 -1.4276 -1.8420 20 6 8.6050 -1.6169 -3.9749 21 7 7.8849 -2.0054 -5.0058 22 14 10.3049 -0.8907 -4.2437 23 1 11.3157 -1.7248 -3.5452 24 1 10.6062 -0.8606 -5.6974 25 1 10.3441 0.4914 -3.7019 26 6 4.3060 -3.0468 0.2276 27 1 -0.3633 0.0025 1.0277 28 1 -0.3633 0.8887 -0.5160 29 1 -0.3633 -0.8912 -0.5117 30 1 2.0948 2.1541 0.0004 31 1 2.5080 -5.1913 1.2570 32 1 1.4834 -4.9576 -0.1747 33 1 4.3402 -5.9616 -0.0256 34 1 2.9363 -6.6994 -0.8330 35 1 3.9757 -5.7957 -2.6765 36 1 3.0063 -4.3822 -2.1867 37 1 6.9752 -3.0562 -0.5463 38 1 6.2677 -1.4273 -0.6668 39 1 6.3246 -2.5660 -3.2507 40 1 8.2371 -1.9150 -5.9051 41 1 4.8554 -3.7535 0.8496 42 1 4.3694 -2.0510 0.6667 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001201766520.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:00:00 Heat of formation + Delta-G solvation = -7.731190 kcal Electronic energy + Delta-G solvation = -26949.631142 eV Core-core repulsion = 23126.605917 eV Total energy + Delta-G solvation = -3823.025224 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.152 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -46.11658 -41.69212 -39.88037 -36.89270 -36.51165 -35.64738 -34.70395 -33.38777 -32.63443 -30.38042 -29.35436 -27.89410 -26.87468 -25.23690 -24.30884 -23.56618 -22.57749 -22.06638 -21.04542 -19.27179 -19.08076 -18.79386 -18.13676 -17.62173 -17.17660 -16.89010 -16.65591 -16.11735 -15.97158 -15.15808 -15.06870 -14.87052 -14.75953 -14.63482 -14.30321 -14.15267 -13.91283 -13.63354 -13.61878 -13.33526 -13.09761 -12.73309 -12.71100 -12.39737 -12.25971 -12.16060 -11.94585 -11.79813 -11.61054 -11.47833 -11.28524 -10.94326 -10.65786 -10.55734 -9.79152 -8.98260 -7.91911 -5.21044 -0.34985 1.05433 1.38568 1.47742 1.51923 1.57708 1.73154 1.96374 2.58018 2.68857 3.16448 3.21585 3.42040 3.57814 3.63603 3.81676 3.86538 3.97308 4.03522 4.05755 4.21216 4.32136 4.33913 4.43751 4.49800 4.68035 4.72109 4.74661 4.79037 4.83735 4.90807 4.92472 5.07293 5.10850 5.20350 5.22680 5.32213 5.50107 5.90985 6.28579 6.62313 6.70566 7.03049 7.35095 8.09844 8.34100 9.31940 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.014017 B = 0.004626 C = 0.003729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.146692 B = 6051.676400 C = 7506.531881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.114 4.114 3 C -0.007 4.007 4 N -0.369 5.369 5 O 0.106 5.894 6 C -0.123 4.123 7 C 0.600 3.400 8 O -0.532 6.532 9 N -0.591 5.591 10 C 0.108 3.892 11 C -0.153 4.153 12 C 0.065 3.935 13 O -0.394 6.394 14 C 0.105 3.895 15 H 0.022 0.978 16 C 0.164 3.836 17 N -0.740 5.740 18 C -0.244 4.244 19 H 0.079 0.921 20 C -0.077 4.077 21 N -0.972 5.972 22 Si 0.976 3.024 23 H -0.275 1.275 24 H -0.295 1.295 25 H -0.278 1.278 26 C 0.076 3.924 27 H 0.095 0.905 28 H 0.100 0.900 29 H 0.074 0.926 30 H 0.234 0.766 31 H 0.097 0.903 32 H 0.093 0.907 33 H 0.085 0.915 34 H 0.118 0.882 35 H 0.097 0.903 36 H 0.036 0.964 37 H 0.034 0.966 38 H 0.042 0.958 39 H 0.372 0.628 40 H 0.250 0.750 41 H 0.116 0.884 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.162 -2.118 15.094 22.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.119 4.119 3 C -0.184 4.184 4 N -0.072 5.072 5 O 0.037 5.963 6 C -0.188 4.188 7 C 0.387 3.613 8 O -0.410 6.410 9 N -0.322 5.322 10 C -0.012 4.012 11 C -0.191 4.191 12 C -0.011 4.011 13 O -0.313 6.313 14 C 0.045 3.955 15 H 0.040 0.960 16 C 0.037 3.963 17 N -0.382 5.382 18 C -0.376 4.376 19 H 0.097 0.903 20 C -0.269 4.269 21 N -0.623 5.623 22 Si 0.804 3.196 23 H -0.201 1.201 24 H -0.222 1.222 25 H -0.204 1.204 26 C -0.049 4.049 27 H 0.113 0.887 28 H 0.119 0.881 29 H 0.093 0.907 30 H 0.250 0.750 31 H 0.115 0.885 32 H 0.111 0.889 33 H 0.103 0.897 34 H 0.136 0.864 35 H 0.116 0.884 36 H 0.054 0.946 37 H 0.052 0.948 38 H 0.060 0.940 39 H 0.204 0.796 40 H 0.059 0.941 41 H 0.135 0.865 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -16.236 -1.799 15.075 22.228 hybrid contribution -0.058 0.447 -0.884 0.992 sum -16.294 -1.352 14.190 21.649 Atomic orbital electron populations 1.20427 0.84451 1.04743 1.04362 1.22089 1.00168 0.89807 0.99847 1.25628 0.86617 1.03586 1.02589 1.73807 1.24813 0.92095 1.16471 1.85205 1.28125 1.15323 1.67664 1.24139 0.85362 0.96619 1.12682 1.16834 0.85420 0.82145 0.76913 1.90780 1.17996 1.80831 1.51400 1.47900 1.06402 1.07655 1.70262 1.22162 0.99718 0.76968 1.02346 1.22430 1.00900 0.99692 0.96087 1.22384 0.86092 0.94335 0.98310 1.86379 1.33689 1.26427 1.84772 1.21951 0.96539 0.83632 0.93368 0.96039 1.20757 0.91064 0.97019 0.87457 1.42408 1.17481 1.75249 1.03093 1.19637 0.93525 1.31842 0.92576 0.90344 1.25592 1.02574 1.03365 0.95334 1.69843 1.39263 1.55205 0.97986 0.85181 0.79734 0.78470 0.76198 1.20127 1.22169 1.20367 1.22772 0.80717 1.03599 0.97792 0.88695 0.88109 0.90706 0.74987 0.88494 0.88854 0.89663 0.86368 0.88448 0.94565 0.94766 0.94015 0.79637 0.94109 0.86543 0.87924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.35 10.02 71.24 0.71 -0.64 16 2 C -0.11 -2.58 6.36 -19.45 -0.12 -2.71 16 3 C -0.01 -0.14 12.14 85.69 1.04 0.90 16 4 N -0.37 -10.98 12.04 -58.55 -0.71 -11.68 16 5 O 0.11 3.20 7.50 65.86 0.49 3.70 16 6 C -0.12 -3.35 6.85 24.39 0.17 -3.19 16 7 C 0.60 16.22 7.63 86.69 0.66 16.88 16 8 O -0.53 -15.39 14.38 -3.96 -0.06 -15.44 16 9 N -0.59 -14.15 2.19 -821.76 -1.80 -15.95 16 10 C 0.11 1.96 6.17 86.38 0.53 2.50 16 11 C -0.15 -2.72 5.78 30.31 0.18 -2.55 16 12 C 0.06 1.71 6.37 71.50 0.46 2.17 16 13 O -0.39 -13.90 9.38 -117.88 -1.11 -15.01 16 14 C 0.11 3.67 2.32 31.21 0.07 3.75 16 15 H 0.02 0.86 8.11 -2.39 -0.02 0.84 16 16 C 0.16 6.89 5.92 86.38 0.51 7.40 16 17 N -0.74 -40.11 5.54 -343.44 -1.90 -42.01 16 18 C -0.24 -14.22 9.99 84.03 0.84 -13.38 16 19 H 0.08 4.33 7.83 -2.91 -0.02 4.30 16 20 C -0.08 -4.58 5.50 84.86 0.47 -4.11 16 21 N -0.97 -61.99 13.06 21.65 0.28 -61.70 16 22 Si 0.98 47.49 29.55 68.60 2.03 49.52 16 23 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 24 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 25 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 26 C 0.08 1.95 4.47 87.26 0.39 2.34 16 27 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.07 1.50 6.63 -2.39 -0.02 1.48 16 30 H 0.23 3.04 8.06 -2.91 -0.02 3.02 16 31 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.09 1.77 6.96 -2.38 -0.02 1.75 16 33 H 0.08 1.55 8.01 -2.38 -0.02 1.53 16 34 H 0.12 1.43 8.14 -2.38 -0.02 1.41 16 35 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 36 H 0.04 1.03 7.40 -2.38 -0.02 1.01 16 37 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.04 1.73 8.14 -2.38 -0.02 1.71 16 39 H 0.37 21.90 7.65 -92.71 -0.71 21.19 16 40 H 0.25 15.43 8.31 -92.70 -0.77 14.66 16 41 H 0.12 2.53 8.11 -2.39 -0.02 2.51 16 42 H 0.10 2.69 4.77 -3.32 -0.02 2.67 16 Total: -1.00 -75.31 343.35 3.47 -71.84 By element: Atomic # 1 Polarization: 27.06 SS G_CDS: 0.33 Total: 27.39 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: 5.90 Total: 9.35 kcal Atomic # 7 Polarization: -127.22 SS G_CDS: -4.12 Total: -131.34 kcal Atomic # 8 Polarization: -26.08 SS G_CDS: -0.67 Total: -26.75 kcal Atomic # 14 Polarization: 47.49 SS G_CDS: 2.03 Total: 49.52 kcal Total: -75.31 3.47 -71.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201766520.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.104 kcal (2) G-P(sol) polarization free energy of solvation -75.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds