Wall clock time and date at job start Fri Apr 10 2020 18:00:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86798 * 120.00056 * 2 1 4 4 H 1.48506 * 109.47050 * 269.99896 * 3 2 1 5 5 H 1.48500 * 109.47345 * 29.99561 * 3 2 1 6 6 H 1.48498 * 109.47152 * 149.99643 * 3 2 1 7 7 C 1.38951 * 120.00059 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99785 * 359.97438 * 7 2 1 9 9 N 1.37103 * 120.00087 * 180.02562 * 7 2 1 10 10 C 1.34774 * 119.99695 * 179.97438 * 9 7 2 11 11 O 1.21287 * 120.00421 * 359.97438 * 10 9 7 12 12 C 1.50700 * 119.99464 * 179.97438 * 10 9 7 13 13 N 1.46507 * 109.46959 * 180.02562 * 12 10 9 14 14 C 1.34775 * 119.99876 * 180.02562 * 13 12 10 15 15 O 1.21583 * 120.00144 * 359.97438 * 14 13 12 16 16 N 1.34777 * 119.99585 * 179.97438 * 14 13 12 17 17 C 1.46499 * 119.99665 * 179.72218 * 16 14 13 18 18 C 1.47202 * 109.47220 * 180.27974 * 17 16 14 19 19 C 9.37488 * 151.77913 * 180.20747 * 9 1 2 20 20 C 9.30328 * 159.28134 * 180.37123 * 10 1 2 21 21 H 1.09000 * 109.47594 * 106.03276 * 20 19 18 22 22 C 1.53087 * 109.48156 * 346.01287 * 20 19 18 23 23 C 1.53187 * 109.16271 * 182.40881 * 22 20 19 24 24 C 1.53172 * 109.03446 * 56.98016 * 23 22 20 25 25 C 1.53093 * 109.16269 * 303.02008 * 24 23 22 26 26 O 1.42899 * 109.42735 * 57.60561 * 25 24 23 27 27 H 0.96996 * 120.00344 * 0.02562 * 1 2 3 28 28 H 0.96995 * 119.99724 * 359.97438 * 9 7 2 29 29 H 1.08998 * 109.46948 * 60.00556 * 12 10 9 30 30 H 1.08994 * 109.47551 * 299.99844 * 12 10 9 31 31 H 0.97000 * 119.99601 * 359.97438 * 13 12 10 32 32 H 0.97001 * 120.00485 * 0.02562 * 16 14 13 33 33 H 1.09009 * 109.47454 * 300.27637 * 17 16 14 34 34 H 1.08998 * 109.47492 * 60.27932 * 17 16 14 35 35 H 1.09004 * 109.52385 * 302.31092 * 22 20 19 36 36 H 1.09001 * 109.52649 * 62.43844 * 22 20 19 37 37 H 1.09004 * 109.53944 * 176.84524 * 23 22 20 38 38 H 1.08995 * 109.53703 * 297.02030 * 23 22 20 39 39 H 1.09004 * 109.52513 * 62.92556 * 24 23 22 40 40 H 1.09000 * 109.51933 * 183.05301 * 24 23 22 41 41 H 1.09002 * 109.47671 * 177.59472 * 25 24 23 42 42 H 1.09004 * 109.48158 * 297.61265 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6527 0.6999 6 1 3.5456 1.4402 0.7001 7 6 2.0088 -1.2033 0.0005 8 1 1.4688 -2.1386 0.0014 9 7 3.3799 -1.2034 0.0011 10 6 4.0537 -2.3706 0.0021 11 8 3.4472 -3.4210 0.0031 12 6 5.5607 -2.3705 0.0021 13 7 6.0490 -3.7518 0.0027 14 6 7.3741 -3.9980 0.0034 15 8 8.1642 -3.0739 0.0029 16 7 7.8233 -5.2687 0.0045 17 6 9.2636 -5.5364 -0.0010 18 6 9.4924 -6.9905 -0.0053 19 6 9.6749 -8.1503 -0.0088 20 6 9.9037 -9.6044 -0.0128 21 1 10.2401 -9.9167 -1.0014 22 6 8.5998 -10.3273 0.3347 23 6 8.8599 -11.8360 0.3876 24 6 9.9692 -12.1162 1.4061 25 6 11.2202 -11.3241 1.0172 26 8 10.9017 -9.9324 0.9560 27 1 -0.4850 0.8400 -0.0004 28 1 3.8648 -0.3633 0.0007 29 1 5.9239 -1.8560 0.8917 30 1 5.9240 -1.8575 -0.8883 31 1 5.4186 -4.4890 0.0034 32 1 7.1930 -6.0060 0.0044 33 1 9.7118 -5.0955 -0.8915 34 1 9.7177 -5.0998 0.8885 35 1 8.2412 -9.9853 1.3056 36 1 7.8500 -10.1125 -0.4268 37 1 7.9488 -12.3527 0.6894 38 1 9.1695 -12.1872 -0.5966 39 1 9.6383 -11.8102 2.3986 40 1 10.1985 -13.1818 1.4109 41 1 11.9992 -11.4863 1.7622 42 1 11.5742 -11.6592 0.0423 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001312662990.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:00:33 Heat of formation + Delta-G solvation = -63.837567 kcal Electronic energy + Delta-G solvation = -23547.795465 eV Core-core repulsion = 19722.337285 eV Total energy + Delta-G solvation = -3825.458179 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.152 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.98288 -39.88678 -38.42034 -35.74512 -34.48805 -34.16506 -33.76406 -33.62432 -31.80580 -31.10704 -28.40309 -26.73050 -25.22315 -24.25344 -23.93135 -20.85767 -20.81740 -19.65597 -19.00322 -18.55594 -17.71936 -16.76672 -16.53971 -15.91360 -15.79904 -15.60965 -15.17859 -14.99832 -14.73343 -14.65736 -14.34594 -14.30313 -13.79957 -13.59068 -13.25602 -13.15118 -13.06040 -12.48877 -12.16886 -12.14794 -12.05176 -11.74693 -11.42750 -11.23444 -11.12257 -10.82732 -10.63834 -10.50480 -10.16815 -10.05944 -9.83485 -9.69687 -9.27088 -8.77016 -8.72479 -8.30372 -6.40692 -3.93333 1.85058 2.17410 2.89831 3.00246 3.04941 3.13126 3.27528 3.41609 3.57627 3.89717 4.03848 4.30117 4.30431 4.33359 4.39979 4.48735 4.61710 4.66625 4.91033 5.00777 5.14388 5.17491 5.20453 5.29493 5.34688 5.38376 5.43330 5.53649 5.59774 5.67101 5.77771 5.79801 5.85381 6.29573 6.60521 6.67406 6.96377 7.14620 7.45040 8.00115 8.11071 8.44303 8.66331 8.81792 9.29962 9.63616 10.71459 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.029175 B = 0.001839 C = 0.001744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.507281 B =15221.552185 C =16050.426512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.045 3.955 3 Si 0.879 3.121 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.266 1.266 7 C -0.310 4.310 8 H 0.121 0.879 9 N -0.576 5.576 10 C 0.438 3.562 11 O -0.580 6.580 12 C 0.126 3.874 13 N -0.723 5.723 14 C 0.709 3.291 15 O -0.596 6.596 16 N -0.748 5.748 17 C 0.255 3.745 18 C -0.162 4.162 19 C -0.157 4.157 20 C 0.207 3.793 21 H 0.082 0.918 22 C -0.146 4.146 23 C -0.123 4.123 24 C -0.160 4.160 25 C 0.061 3.939 26 O -0.374 6.374 27 H 0.276 0.724 28 H 0.375 0.625 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.409 0.591 32 H 0.401 0.599 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.076 0.924 41 H 0.098 0.902 42 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.546 -20.465 0.113 29.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.159 4.159 3 Si 0.705 3.295 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.192 1.192 7 C -0.439 4.439 8 H 0.139 0.861 9 N -0.214 5.214 10 C 0.224 3.776 11 O -0.464 6.464 12 C -0.003 4.003 13 N -0.381 5.381 14 C 0.408 3.592 15 O -0.475 6.475 16 N -0.405 5.405 17 C 0.132 3.868 18 C -0.163 4.163 19 C -0.158 4.158 20 C 0.150 3.850 21 H 0.100 0.900 22 C -0.184 4.184 23 C -0.160 4.160 24 C -0.197 4.197 25 C -0.015 4.015 26 O -0.294 6.294 27 H 0.086 0.914 28 H 0.208 0.792 29 H 0.102 0.898 30 H 0.102 0.898 31 H 0.246 0.754 32 H 0.235 0.765 33 H 0.111 0.889 34 H 0.113 0.887 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.092 0.908 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.116 0.884 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 21.705 -20.006 0.233 29.519 hybrid contribution -0.194 0.466 -0.119 0.519 sum 21.511 -19.540 0.114 29.061 Atomic orbital electron populations 1.69614 1.05723 1.27820 1.48186 1.25065 0.95534 0.98185 0.97123 0.86667 0.79935 0.83731 0.79143 1.19393 1.19998 1.19173 1.19440 0.78967 0.96791 1.48683 0.86101 1.42112 1.07684 1.06138 1.65443 1.19654 0.88096 0.84871 0.84958 1.90534 1.69263 1.30930 1.55672 1.20823 0.93350 0.82741 1.03348 1.44734 1.05092 1.09440 1.78802 1.15733 0.82690 0.82796 0.77957 1.90918 1.55129 1.43000 1.58448 1.44995 1.07204 1.06731 1.81564 1.17889 0.81219 0.83859 1.03857 1.22223 1.01446 0.93186 0.99405 1.21577 0.98892 0.92529 1.02835 1.18638 0.89127 0.84486 0.92708 0.90049 1.22173 0.96941 0.95409 1.03856 1.21608 0.99380 0.95413 0.99624 1.22231 0.96310 1.00838 1.00362 1.22633 0.96713 0.80660 1.01519 1.88019 1.57569 1.24753 1.59030 0.91388 0.79206 0.89769 0.89764 0.75379 0.76542 0.88916 0.88732 0.90350 0.90065 0.90803 0.91469 0.90755 0.90551 0.88387 0.92840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.93 13.96 55.50 0.77 -24.15 16 2 C 0.05 1.21 5.50 -17.47 -0.10 1.11 16 3 Si 0.88 18.97 27.74 -169.99 -4.71 14.26 16 4 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 5 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 6 H -0.27 -5.26 6.52 56.52 0.37 -4.89 16 7 C -0.31 -8.53 10.16 -14.93 -0.15 -8.69 16 8 H 0.12 3.78 7.39 -52.49 -0.39 3.40 16 9 N -0.58 -13.34 5.09 -10.96 -0.06 -13.40 16 10 C 0.44 9.59 7.85 -10.99 -0.09 9.50 16 11 O -0.58 -14.56 15.24 5.55 0.08 -14.47 16 12 C 0.13 2.18 6.15 -5.19 -0.03 2.15 16 13 N -0.72 -11.53 5.53 -66.41 -0.37 -11.90 16 14 C 0.71 10.92 8.57 -86.92 -0.74 10.18 16 15 O -0.60 -10.95 16.34 5.29 0.09 -10.87 16 16 N -0.75 -8.83 5.54 -68.12 -0.38 -9.21 16 17 C 0.25 2.69 6.15 -6.83 -0.04 2.65 16 18 C -0.16 -1.69 13.46 -37.12 -0.50 -2.19 16 19 C -0.16 -1.61 12.94 -37.12 -0.48 -2.09 16 20 C 0.21 1.70 3.09 -29.48 -0.09 1.61 16 21 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 22 C -0.15 -0.98 5.37 -26.59 -0.14 -1.12 16 23 C -0.12 -0.61 6.03 -26.55 -0.16 -0.77 16 24 C -0.16 -0.77 6.14 -26.59 -0.16 -0.93 16 25 C 0.06 0.35 6.84 37.21 0.25 0.60 16 26 O -0.37 -3.44 10.36 -35.23 -0.37 -3.81 16 27 H 0.28 7.24 8.31 -40.82 -0.34 6.90 16 28 H 0.37 7.66 5.76 -40.82 -0.24 7.42 16 29 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 30 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 31 H 0.41 6.37 7.45 -40.82 -0.30 6.07 16 32 H 0.40 4.00 8.46 -40.82 -0.35 3.65 16 33 H 0.09 0.94 8.14 -51.92 -0.42 0.52 16 34 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 39 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 41 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.05 0.24 8.14 -51.93 -0.42 -0.19 16 LS Contribution 362.01 15.07 5.46 5.46 Total: -1.00 -33.76 362.01 -7.85 -41.61 By element: Atomic # 1 Polarization: 20.42 SS G_CDS: -5.94 Total: 14.48 kcal Atomic # 6 Polarization: 14.43 SS G_CDS: -2.44 Total: 12.00 kcal Atomic # 7 Polarization: -58.63 SS G_CDS: -0.03 Total: -58.66 kcal Atomic # 8 Polarization: -28.95 SS G_CDS: -0.19 Total: -29.14 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -4.71 Total: 14.26 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.76 -7.85 -41.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001312662990.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.223 kcal (2) G-P(sol) polarization free energy of solvation -33.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds