Wall clock time and date at job start Fri Apr 10 2020 18:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86798 * 120.00056 * 2 1 4 4 H 1.48506 * 109.47050 * 269.99896 * 3 2 1 5 5 H 1.48500 * 109.47345 * 29.99561 * 3 2 1 6 6 H 1.48498 * 109.47152 * 149.99643 * 3 2 1 7 7 C 1.38951 * 120.00059 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99785 * 359.97438 * 7 2 1 9 9 N 1.37103 * 120.00087 * 180.02562 * 7 2 1 10 10 C 1.34774 * 119.99695 * 179.97438 * 9 7 2 11 11 O 1.21287 * 120.00421 * 359.97438 * 10 9 7 12 12 C 1.50700 * 119.99464 * 179.97438 * 10 9 7 13 13 N 1.46507 * 109.46959 * 180.02562 * 12 10 9 14 14 C 1.34775 * 119.99876 * 180.02562 * 13 12 10 15 15 O 1.21583 * 120.00144 * 359.97438 * 14 13 12 16 16 N 1.34777 * 119.99585 * 179.97438 * 14 13 12 17 17 C 1.46499 * 119.99665 * 179.72218 * 16 14 13 18 18 C 1.47202 * 109.47220 * 180.27974 * 17 16 14 19 19 C 9.37488 * 151.77913 * 180.20747 * 9 1 2 20 20 C 9.30328 * 159.28134 * 180.37123 * 10 1 2 21 21 H 1.09000 * 109.47594 * 106.03276 * 20 19 18 22 22 C 1.53087 * 109.48156 * 346.01287 * 20 19 18 23 23 C 1.53187 * 109.16271 * 182.40881 * 22 20 19 24 24 C 1.53172 * 109.03446 * 56.98016 * 23 22 20 25 25 C 1.53093 * 109.16269 * 303.02008 * 24 23 22 26 26 O 1.42899 * 109.42735 * 57.60561 * 25 24 23 27 27 H 0.96996 * 120.00344 * 0.02562 * 1 2 3 28 28 H 0.96995 * 119.99724 * 359.97438 * 9 7 2 29 29 H 1.08998 * 109.46948 * 60.00556 * 12 10 9 30 30 H 1.08994 * 109.47551 * 299.99844 * 12 10 9 31 31 H 0.97000 * 119.99601 * 359.97438 * 13 12 10 32 32 H 0.97001 * 120.00485 * 0.02562 * 16 14 13 33 33 H 1.09009 * 109.47454 * 300.27637 * 17 16 14 34 34 H 1.08998 * 109.47492 * 60.27932 * 17 16 14 35 35 H 1.09004 * 109.52385 * 302.31092 * 22 20 19 36 36 H 1.09001 * 109.52649 * 62.43844 * 22 20 19 37 37 H 1.09004 * 109.53944 * 176.84524 * 23 22 20 38 38 H 1.08995 * 109.53703 * 297.02030 * 23 22 20 39 39 H 1.09004 * 109.52513 * 62.92556 * 24 23 22 40 40 H 1.09000 * 109.51933 * 183.05301 * 24 23 22 41 41 H 1.09002 * 109.47671 * 177.59472 * 25 24 23 42 42 H 1.09004 * 109.48158 * 297.61265 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6527 0.6999 6 1 3.5456 1.4402 0.7001 7 6 2.0088 -1.2033 0.0005 8 1 1.4688 -2.1386 0.0014 9 7 3.3799 -1.2034 0.0011 10 6 4.0537 -2.3706 0.0021 11 8 3.4472 -3.4210 0.0031 12 6 5.5607 -2.3705 0.0021 13 7 6.0490 -3.7518 0.0027 14 6 7.3741 -3.9980 0.0034 15 8 8.1642 -3.0739 0.0029 16 7 7.8233 -5.2687 0.0045 17 6 9.2636 -5.5364 -0.0010 18 6 9.4924 -6.9905 -0.0053 19 6 9.6749 -8.1503 -0.0088 20 6 9.9037 -9.6044 -0.0128 21 1 10.2401 -9.9167 -1.0014 22 6 8.5998 -10.3273 0.3347 23 6 8.8599 -11.8360 0.3876 24 6 9.9692 -12.1162 1.4061 25 6 11.2202 -11.3241 1.0172 26 8 10.9017 -9.9324 0.9560 27 1 -0.4850 0.8400 -0.0004 28 1 3.8648 -0.3633 0.0007 29 1 5.9239 -1.8560 0.8917 30 1 5.9240 -1.8575 -0.8883 31 1 5.4186 -4.4890 0.0034 32 1 7.1930 -6.0060 0.0044 33 1 9.7118 -5.0955 -0.8915 34 1 9.7177 -5.0998 0.8885 35 1 8.2412 -9.9853 1.3056 36 1 7.8500 -10.1125 -0.4268 37 1 7.9488 -12.3527 0.6894 38 1 9.1695 -12.1872 -0.5966 39 1 9.6383 -11.8102 2.3986 40 1 10.1985 -13.1818 1.4109 41 1 11.9992 -11.4863 1.7622 42 1 11.5742 -11.6592 0.0423 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001312662990.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:00:32 Heat of formation + Delta-G solvation = -90.095277 kcal Electronic energy + Delta-G solvation = -23548.934084 eV Core-core repulsion = 19722.337285 eV Total energy + Delta-G solvation = -3826.596799 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.152 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.26547 -40.43346 -40.15735 -36.76172 -36.22808 -35.30161 -34.66532 -34.42183 -33.81992 -31.80497 -29.68728 -27.84638 -26.16948 -25.56824 -24.58324 -22.03811 -21.46189 -21.28123 -20.59282 -19.92821 -18.66661 -17.62772 -17.43298 -17.31390 -17.02701 -16.71117 -16.44673 -16.03216 -15.79448 -15.73194 -15.54588 -14.95065 -14.92865 -14.83354 -14.64998 -14.29652 -13.98457 -13.77132 -13.62688 -13.59687 -12.95437 -12.61454 -12.43503 -12.22576 -11.99157 -11.87430 -11.80779 -11.56856 -11.51201 -11.32748 -11.17045 -10.64396 -10.48542 -10.37217 -10.30704 -9.86300 -8.44606 -6.06618 0.97987 1.32700 1.35431 1.38788 1.45399 1.80196 1.87121 2.07451 2.21734 2.66731 2.85092 3.11882 3.26613 3.35277 3.81860 3.90694 3.92026 4.00848 4.02933 4.18104 4.37076 4.44111 4.46175 4.49980 4.53977 4.57364 4.67830 4.81137 4.86971 5.03035 5.10698 5.17455 5.26446 5.30375 5.36124 5.49725 5.86986 5.89514 6.15486 6.36052 6.49948 6.79235 6.94267 7.29376 7.45700 7.79610 8.71799 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.029175 B = 0.001839 C = 0.001744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.507281 B =15221.552185 C =16050.426512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.008 4.008 3 Si 0.959 3.041 4 H -0.256 1.256 5 H -0.274 1.274 6 H -0.232 1.232 7 C -0.332 4.332 8 H 0.063 0.937 9 N -0.577 5.577 10 C 0.445 3.555 11 O -0.615 6.615 12 C 0.138 3.862 13 N -0.726 5.726 14 C 0.711 3.289 15 O -0.623 6.623 16 N -0.735 5.735 17 C 0.258 3.742 18 C -0.178 4.178 19 C -0.159 4.159 20 C 0.201 3.799 21 H 0.099 0.901 22 C -0.144 4.144 23 C -0.121 4.121 24 C -0.158 4.158 25 C 0.054 3.946 26 O -0.401 6.401 27 H 0.281 0.719 28 H 0.392 0.608 29 H 0.104 0.896 30 H 0.105 0.895 31 H 0.410 0.590 32 H 0.410 0.590 33 H 0.099 0.901 34 H 0.097 0.903 35 H 0.062 0.938 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.062 0.938 40 H 0.095 0.905 41 H 0.107 0.893 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.101 -20.301 -0.151 31.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.208 4.208 3 Si 0.779 3.221 4 H -0.181 1.181 5 H -0.199 1.199 6 H -0.155 1.155 7 C -0.461 4.461 8 H 0.081 0.919 9 N -0.217 5.217 10 C 0.233 3.767 11 O -0.501 6.501 12 C 0.010 3.990 13 N -0.383 5.383 14 C 0.411 3.589 15 O -0.505 6.505 16 N -0.391 5.391 17 C 0.135 3.865 18 C -0.179 4.179 19 C -0.160 4.160 20 C 0.145 3.855 21 H 0.116 0.884 22 C -0.182 4.182 23 C -0.159 4.159 24 C -0.195 4.195 25 C -0.021 4.021 26 O -0.322 6.322 27 H 0.091 0.909 28 H 0.228 0.772 29 H 0.121 0.879 30 H 0.123 0.877 31 H 0.248 0.752 32 H 0.246 0.754 33 H 0.117 0.883 34 H 0.114 0.886 35 H 0.081 0.919 36 H 0.104 0.896 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.081 0.919 40 H 0.114 0.886 41 H 0.125 0.875 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 24.288 -19.895 -0.028 31.396 hybrid contribution -0.984 0.212 -0.032 1.007 sum 23.304 -19.683 -0.060 30.505 Atomic orbital electron populations 1.69777 1.08053 1.29447 1.49321 1.26070 0.96429 1.02616 0.95707 0.85441 0.79609 0.76975 0.80074 1.18084 1.19915 1.15484 1.19030 0.81002 0.95252 1.50772 0.91883 1.41910 1.06094 1.07447 1.66297 1.20526 0.90103 0.83844 0.82240 1.90524 1.70837 1.32351 1.56412 1.20727 0.89118 0.83968 1.05222 1.44700 1.05475 1.08975 1.79185 1.15735 0.82032 0.83424 0.77705 1.90900 1.55596 1.44121 1.59843 1.44912 1.08102 1.05867 1.80239 1.17918 0.80224 0.84090 1.04256 1.22228 1.02266 0.93296 1.00081 1.22235 0.98154 0.93364 1.02275 1.18864 0.89773 0.83430 0.93458 0.88357 1.22156 0.96317 0.96601 1.03089 1.21630 0.99779 0.94006 1.00452 1.22222 0.95860 1.01816 0.99615 1.22863 0.97357 0.79189 1.02739 1.87972 1.57858 1.26880 1.59443 0.90944 0.77166 0.87853 0.87694 0.75243 0.75438 0.88326 0.88566 0.91901 0.89578 0.90240 0.90132 0.91946 0.88631 0.87522 0.91333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.33 13.96 21.66 0.30 -54.03 16 2 C -0.01 -0.45 5.50 84.93 0.47 0.02 16 3 Si 0.96 37.95 27.74 68.60 1.90 39.85 16 4 H -0.26 -9.66 7.11 99.48 0.71 -8.96 16 5 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 6 H -0.23 -7.79 6.52 99.48 0.65 -7.15 16 7 C -0.33 -18.76 10.16 84.04 0.85 -17.90 16 8 H 0.06 4.22 7.39 -2.91 -0.02 4.19 16 9 N -0.58 -26.34 5.09 -306.99 -1.56 -27.90 16 10 C 0.45 19.22 7.85 87.66 0.69 19.91 16 11 O -0.62 -31.46 15.24 -3.05 -0.05 -31.51 16 12 C 0.14 4.46 6.15 85.63 0.53 4.99 16 13 N -0.73 -22.01 5.53 -482.30 -2.67 -24.67 16 14 C 0.71 20.70 8.57 179.05 1.53 22.24 16 15 O -0.62 -21.67 16.34 -3.98 -0.06 -21.73 16 16 N -0.73 -16.35 5.54 -487.68 -2.70 -19.05 16 17 C 0.26 5.14 6.15 84.57 0.52 5.66 16 18 C -0.18 -3.58 13.46 31.13 0.42 -3.16 16 19 C -0.16 -3.13 12.94 31.12 0.40 -2.73 16 20 C 0.20 3.08 3.09 28.82 0.09 3.17 16 21 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 22 C -0.14 -1.79 5.37 30.69 0.16 -1.63 16 23 C -0.12 -1.00 6.03 30.71 0.19 -0.81 16 24 C -0.16 -1.26 6.14 30.68 0.19 -1.08 16 25 C 0.05 0.53 6.84 72.01 0.49 1.02 16 26 O -0.40 -7.02 10.36 -148.98 -1.54 -8.56 16 27 H 0.28 15.07 8.31 -92.71 -0.77 14.30 16 28 H 0.39 14.98 5.76 -92.71 -0.53 14.44 16 29 H 0.10 3.04 8.14 -2.39 -0.02 3.02 16 30 H 0.11 3.05 8.14 -2.39 -0.02 3.03 16 31 H 0.41 12.43 7.45 -92.71 -0.69 11.73 16 32 H 0.41 7.69 8.46 -92.71 -0.78 6.91 16 33 H 0.10 1.88 8.14 -2.38 -0.02 1.86 16 34 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.08 0.58 8.14 -2.38 -0.02 0.56 16 38 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 39 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 40 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 41 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 Total: -1.00 -75.62 362.01 -0.84 -76.47 By element: Atomic # 1 Polarization: 42.43 SS G_CDS: -0.99 Total: 41.44 kcal Atomic # 6 Polarization: 23.17 SS G_CDS: 6.53 Total: 29.70 kcal Atomic # 7 Polarization: -119.02 SS G_CDS: -6.63 Total: -125.66 kcal Atomic # 8 Polarization: -60.15 SS G_CDS: -1.66 Total: -61.80 kcal Atomic # 14 Polarization: 37.95 SS G_CDS: 1.90 Total: 39.85 kcal Total: -75.62 -0.84 -76.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001312662990.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.627 kcal (2) G-P(sol) polarization free energy of solvation -75.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds