Wall clock time and date at job start Fri Apr 10 2020 18:01:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.52994 * 109.47568 * 31.07944 * 3 2 1 5 5 C 1.52999 * 109.47124 * 180.02562 * 4 3 2 6 6 C 1.53008 * 109.47007 * 180.02562 * 5 4 3 7 7 N 1.46497 * 109.47076 * 179.97438 * 6 5 4 8 8 C 1.34774 * 120.00160 * 179.97438 * 7 6 5 9 9 O 1.21346 * 119.99798 * 359.97438 * 8 7 6 10 10 C 1.49448 * 120.00247 * 180.02562 * 8 7 6 11 11 O 1.21355 * 120.00006 * 359.97438 * 10 8 7 12 12 N 1.34774 * 120.00247 * 179.97438 * 10 8 7 13 13 C 1.47290 * 125.79121 * 359.97438 * 12 10 8 14 14 C 1.54325 * 107.30599 * 178.92556 * 13 12 10 15 15 C 1.55154 * 102.94303 * 337.81911 * 14 13 12 16 16 O 1.42902 * 111.00280 * 277.42723 * 15 14 13 17 17 C 1.50693 * 111.03939 * 153.59058 * 15 14 13 18 18 H 1.08004 * 120.00401 * 6.33015 * 17 15 14 19 19 C 1.37876 * 120.00383 * 186.33190 * 17 15 14 20 20 N 1.31512 * 119.99646 * 359.97438 * 19 17 15 21 21 Si 1.86803 * 120.00223 * 180.02562 * 19 17 15 22 22 H 1.48493 * 109.47147 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.46990 * 119.99902 * 21 19 17 24 24 H 1.48499 * 109.46928 * 239.99675 * 21 19 17 25 25 C 1.47425 * 125.65138 * 179.97438 * 12 10 8 26 26 H 1.09001 * 109.46919 * 271.07579 * 3 2 1 27 27 H 1.09007 * 109.46802 * 151.07996 * 3 2 1 28 28 H 1.08992 * 109.47510 * 59.99768 * 4 3 2 29 29 H 1.09007 * 109.47102 * 299.99869 * 4 3 2 30 30 H 1.08998 * 109.47839 * 59.99858 * 5 4 3 31 31 H 1.09001 * 109.46989 * 299.99090 * 5 4 3 32 32 H 1.08998 * 109.46939 * 59.99304 * 6 5 4 33 33 H 1.09001 * 109.46501 * 299.99387 * 6 5 4 34 34 H 0.97005 * 120.00064 * 359.97438 * 7 6 5 35 35 H 1.09004 * 109.85762 * 59.50172 * 13 12 10 36 36 H 1.08995 * 110.00297 * 298.43119 * 13 12 10 37 37 H 1.09002 * 110.72180 * 219.45147 * 14 13 12 38 38 H 1.08997 * 110.72163 * 96.18354 * 14 13 12 39 39 H 0.96703 * 114.00194 * 173.65090 * 16 15 14 40 40 H 0.97010 * 119.99834 * 180.02562 * 20 19 17 41 41 H 1.09002 * 110.36696 * 85.25946 * 25 12 10 42 42 H 1.08995 * 110.36608 * 323.04783 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1187 -1.2345 -0.7446 5 6 4.6487 -1.2340 -0.7440 6 6 5.1594 -2.4689 -1.4892 7 7 6.6243 -2.4682 -1.4892 8 6 7.2988 -3.4675 -2.0917 9 8 6.6925 -4.3680 -2.6338 10 6 8.7932 -3.4670 -2.0911 11 8 9.3996 -2.5666 -1.5486 12 7 9.4677 -4.4666 -2.6932 13 6 8.8643 -5.6177 -3.3862 14 6 10.0201 -6.4791 -3.9374 15 6 11.1980 -5.4721 -4.0140 16 8 11.1323 -4.6973 -5.2130 17 6 12.5235 -6.1806 -3.9041 18 1 12.5595 -7.2599 -3.8920 19 6 13.6903 -5.4510 -3.8190 20 7 13.6465 -4.1367 -3.8343 21 14 15.3333 -6.3293 -3.6835 22 1 15.1116 -7.7976 -3.6881 23 1 16.1916 -5.9542 -4.8358 24 1 16.0029 -5.9342 -2.4183 25 6 10.9348 -4.5902 -2.7680 26 1 2.9714 -0.0185 1.0275 27 1 2.9710 0.9004 -0.4970 28 1 2.7554 -1.2154 -1.7720 29 1 2.7558 -2.1342 -0.2476 30 1 5.0117 -1.2534 0.2836 31 1 5.0119 -0.3344 -1.2408 32 1 4.7963 -2.4491 -2.5168 33 1 4.7961 -3.3688 -0.9928 34 1 7.1090 -1.7484 -1.0555 35 1 8.2378 -5.2689 -4.2071 36 1 8.2670 -6.2027 -2.6869 37 1 9.7763 -6.8635 -4.9278 38 1 10.2538 -7.2945 -3.2529 39 1 11.7896 -3.9896 -5.2605 40 1 14.4674 -3.6233 -3.7747 41 1 11.3209 -5.0753 -1.8715 42 1 11.3922 -3.6089 -2.8943 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329329591.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:14 Heat of formation + Delta-G solvation = -101.937273 kcal Electronic energy + Delta-G solvation = -24856.720594 eV Core-core repulsion = 21029.610287 eV Total energy + Delta-G solvation = -3827.110306 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.152 amu Computer time = 4.35 seconds Orbital eigenvalues (eV) -40.35770 -38.59019 -37.60487 -37.19155 -36.16926 -34.45901 -33.79303 -32.27091 -30.24773 -30.05509 -27.92662 -26.19706 -24.95547 -23.31325 -21.98984 -21.59439 -19.79425 -19.43493 -17.99068 -17.29762 -17.09050 -16.60050 -16.57431 -15.76565 -15.51201 -15.17649 -14.89516 -14.55606 -14.40774 -14.01620 -13.97509 -13.51731 -13.15708 -13.07512 -12.90872 -12.72177 -12.48684 -12.29498 -12.11943 -11.83537 -11.68278 -11.62213 -11.52868 -11.18113 -11.12008 -11.08578 -10.80679 -10.59220 -10.47825 -10.22434 -9.40247 -9.27661 -9.17403 -8.73100 -8.42622 -7.92785 -6.32034 -4.41407 1.77497 2.29764 2.36614 2.62599 3.17737 3.26902 3.30467 3.49252 3.58345 3.88327 4.24099 4.25448 4.35961 4.62825 4.72250 4.79535 4.90357 4.95986 5.01276 5.22173 5.28273 5.47085 5.48454 5.69098 5.74397 5.77452 5.81491 6.03878 6.16393 6.31859 6.49762 6.71336 6.76918 6.82513 7.13324 7.14069 7.21102 7.29764 7.70236 7.84886 7.98712 8.02891 8.42373 8.63257 9.26043 9.34574 10.75204 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.041062 B = 0.002223 C = 0.002159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.726684 B =12594.513294 C =12962.895880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C 0.205 3.795 3 C -0.026 4.026 4 C -0.114 4.114 5 C -0.133 4.133 6 C 0.117 3.883 7 N -0.710 5.710 8 C 0.510 3.490 9 O -0.516 6.516 10 C 0.507 3.493 11 O -0.539 6.539 12 N -0.575 5.575 13 C 0.112 3.888 14 C -0.122 4.122 15 C 0.248 3.752 16 O -0.581 6.581 17 C -0.536 4.536 18 H 0.069 0.931 19 C 0.071 3.929 20 N -0.894 5.894 21 Si 0.904 3.096 22 H -0.271 1.271 23 H -0.282 1.282 24 H -0.282 1.282 25 C 0.092 3.908 26 H 0.111 0.889 27 H 0.111 0.889 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.412 0.588 35 H 0.070 0.930 36 H 0.064 0.936 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.381 0.619 40 H 0.270 0.730 41 H 0.067 0.933 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.539 6.068 6.801 17.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.117 5.117 2 C -0.112 4.112 3 C -0.066 4.066 4 C -0.153 4.153 5 C -0.171 4.171 6 C -0.006 4.006 7 N -0.364 5.364 8 C 0.291 3.709 9 O -0.391 6.391 10 C 0.289 3.711 11 O -0.418 6.418 12 N -0.307 5.307 13 C -0.011 4.011 14 C -0.160 4.160 15 C 0.207 3.793 16 O -0.389 6.389 17 C -0.574 4.574 18 H 0.087 0.913 19 C -0.133 4.133 20 N -0.532 5.532 21 Si 0.732 3.268 22 H -0.195 1.195 23 H -0.207 1.207 24 H -0.208 1.208 25 C -0.029 4.029 26 H 0.129 0.871 27 H 0.129 0.871 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.248 0.752 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.095 0.905 38 H 0.097 0.903 39 H 0.231 0.769 40 H 0.080 0.920 41 H 0.086 0.914 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -16.788 5.674 6.599 18.910 hybrid contribution 2.013 0.391 0.481 2.107 sum -14.775 6.064 7.080 17.470 Atomic orbital electron populations 1.81265 1.13226 1.08462 1.08727 1.29276 0.95402 0.93321 0.93246 1.19335 0.81421 1.01480 1.04392 1.21444 0.95117 0.97125 1.01624 1.21797 0.94930 0.98431 1.01896 1.21406 0.79175 0.98606 1.01432 1.45720 1.07127 1.26542 1.57024 1.20422 0.89077 0.82337 0.79060 1.90732 1.70162 1.35360 1.42875 1.19559 0.87341 0.82908 0.81255 1.90724 1.69642 1.35791 1.45673 1.48733 1.09990 1.21665 1.50263 1.22186 0.95991 0.86688 0.96227 1.22713 0.94506 0.97731 1.01023 1.19651 0.92068 0.86603 0.80964 1.86133 1.60889 1.50222 1.41698 1.21505 0.90289 0.93812 1.51828 0.91313 1.25091 0.99846 0.94995 0.93346 1.69719 1.28988 1.04942 1.49577 0.86333 0.82810 0.79900 0.77780 1.19548 1.20741 1.20789 1.23484 0.74802 1.03512 1.01090 0.87120 0.87098 0.90468 0.90503 0.90327 0.90296 0.90970 0.91004 0.75161 0.91173 0.91721 0.90504 0.90324 0.76944 0.92018 0.91427 0.89089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -4.54 18.54 42.16 0.78 -3.76 16 2 C 0.21 1.32 15.43 -20.76 -0.32 1.00 16 3 C -0.03 -0.05 5.70 -29.52 -0.17 -0.22 16 4 C -0.11 -0.33 5.17 -26.73 -0.14 -0.47 16 5 C -0.13 -0.49 5.33 -26.73 -0.14 -0.64 16 6 C 0.12 0.91 5.67 -4.04 -0.02 0.89 16 7 N -0.71 -7.94 5.55 -60.73 -0.34 -8.27 16 8 C 0.51 8.07 7.86 -11.59 -0.09 7.98 16 9 O -0.52 -8.95 14.15 5.50 0.08 -8.87 16 10 C 0.51 9.78 7.92 -11.59 -0.09 9.68 16 11 O -0.54 -11.28 16.73 5.49 0.09 -11.18 16 12 N -0.57 -11.86 3.34 -170.81 -0.57 -12.43 16 13 C 0.11 2.11 5.50 -2.92 -0.02 2.09 16 14 C -0.12 -2.43 6.13 -24.90 -0.15 -2.59 16 15 C 0.25 5.88 0.87 -89.63 -0.08 5.80 16 16 O -0.58 -14.52 13.16 -35.23 -0.46 -14.99 16 17 C -0.54 -13.62 8.27 -34.44 -0.28 -13.90 16 18 H 0.07 1.72 7.79 -52.48 -0.41 1.31 16 19 C 0.07 1.79 5.29 -17.82 -0.09 1.70 16 20 N -0.89 -23.13 10.69 55.43 0.59 -22.54 16 21 Si 0.90 19.88 29.54 -169.99 -5.02 14.86 16 22 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 23 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 24 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 25 C 0.09 2.13 5.38 -2.53 -0.01 2.12 16 26 H 0.11 0.03 8.14 -51.93 -0.42 -0.39 16 27 H 0.11 0.04 8.14 -51.93 -0.42 -0.39 16 28 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 29 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 30 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.41 4.10 7.94 -40.82 -0.32 3.77 16 35 H 0.07 1.34 7.59 -51.93 -0.39 0.94 16 36 H 0.06 1.12 7.70 -51.93 -0.40 0.72 16 37 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 38 H 0.08 1.47 8.03 -51.93 -0.42 1.05 16 39 H 0.38 9.68 7.56 45.56 0.34 10.03 16 40 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 41 H 0.07 1.60 8.03 -51.93 -0.42 1.19 16 42 H 0.09 2.34 7.32 -51.93 -0.38 1.96 16 LS Contribution 361.09 15.07 5.44 5.44 Total: -1.00 -31.82 361.09 -6.36 -38.17 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: -5.34 Total: 10.11 kcal Atomic # 6 Polarization: 15.05 SS G_CDS: -1.61 Total: 13.44 kcal Atomic # 7 Polarization: -47.46 SS G_CDS: 0.47 Total: -47.00 kcal Atomic # 8 Polarization: -34.74 SS G_CDS: -0.29 Total: -35.04 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.02 Total: 14.86 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.82 -6.36 -38.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329329591.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.762 kcal (2) G-P(sol) polarization free energy of solvation -31.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.36 seconds