Wall clock time and date at job start Fri Apr 10 2020 18:01:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.52994 * 109.47568 * 31.07944 * 3 2 1 5 5 C 1.52999 * 109.47124 * 180.02562 * 4 3 2 6 6 C 1.53008 * 109.47007 * 180.02562 * 5 4 3 7 7 N 1.46497 * 109.47076 * 179.97438 * 6 5 4 8 8 C 1.34774 * 120.00160 * 179.97438 * 7 6 5 9 9 O 1.21346 * 119.99798 * 359.97438 * 8 7 6 10 10 C 1.49448 * 120.00247 * 180.02562 * 8 7 6 11 11 O 1.21355 * 120.00006 * 359.97438 * 10 8 7 12 12 N 1.34774 * 120.00247 * 179.97438 * 10 8 7 13 13 C 1.47290 * 125.79121 * 359.97438 * 12 10 8 14 14 C 1.54325 * 107.30599 * 178.92556 * 13 12 10 15 15 C 1.55154 * 102.94303 * 337.81911 * 14 13 12 16 16 O 1.42902 * 111.00280 * 277.42723 * 15 14 13 17 17 C 1.50693 * 111.03939 * 153.59058 * 15 14 13 18 18 H 1.08004 * 120.00401 * 6.33015 * 17 15 14 19 19 C 1.37876 * 120.00383 * 186.33190 * 17 15 14 20 20 N 1.31512 * 119.99646 * 359.97438 * 19 17 15 21 21 Si 1.86803 * 120.00223 * 180.02562 * 19 17 15 22 22 H 1.48493 * 109.47147 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.46990 * 119.99902 * 21 19 17 24 24 H 1.48499 * 109.46928 * 239.99675 * 21 19 17 25 25 C 1.47425 * 125.65138 * 179.97438 * 12 10 8 26 26 H 1.09001 * 109.46919 * 271.07579 * 3 2 1 27 27 H 1.09007 * 109.46802 * 151.07996 * 3 2 1 28 28 H 1.08992 * 109.47510 * 59.99768 * 4 3 2 29 29 H 1.09007 * 109.47102 * 299.99869 * 4 3 2 30 30 H 1.08998 * 109.47839 * 59.99858 * 5 4 3 31 31 H 1.09001 * 109.46989 * 299.99090 * 5 4 3 32 32 H 1.08998 * 109.46939 * 59.99304 * 6 5 4 33 33 H 1.09001 * 109.46501 * 299.99387 * 6 5 4 34 34 H 0.97005 * 120.00064 * 359.97438 * 7 6 5 35 35 H 1.09004 * 109.85762 * 59.50172 * 13 12 10 36 36 H 1.08995 * 110.00297 * 298.43119 * 13 12 10 37 37 H 1.09002 * 110.72180 * 219.45147 * 14 13 12 38 38 H 1.08997 * 110.72163 * 96.18354 * 14 13 12 39 39 H 0.96703 * 114.00194 * 173.65090 * 16 15 14 40 40 H 0.97010 * 119.99834 * 180.02562 * 20 19 17 41 41 H 1.09002 * 110.36696 * 85.25946 * 25 12 10 42 42 H 1.08995 * 110.36608 * 323.04783 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1187 -1.2345 -0.7446 5 6 4.6487 -1.2340 -0.7440 6 6 5.1594 -2.4689 -1.4892 7 7 6.6243 -2.4682 -1.4892 8 6 7.2988 -3.4675 -2.0917 9 8 6.6925 -4.3680 -2.6338 10 6 8.7932 -3.4670 -2.0911 11 8 9.3996 -2.5666 -1.5486 12 7 9.4677 -4.4666 -2.6932 13 6 8.8643 -5.6177 -3.3862 14 6 10.0201 -6.4791 -3.9374 15 6 11.1980 -5.4721 -4.0140 16 8 11.1323 -4.6973 -5.2130 17 6 12.5235 -6.1806 -3.9041 18 1 12.5595 -7.2599 -3.8920 19 6 13.6903 -5.4510 -3.8190 20 7 13.6465 -4.1367 -3.8343 21 14 15.3333 -6.3293 -3.6835 22 1 15.1116 -7.7976 -3.6881 23 1 16.1916 -5.9542 -4.8358 24 1 16.0029 -5.9342 -2.4183 25 6 10.9348 -4.5902 -2.7680 26 1 2.9714 -0.0185 1.0275 27 1 2.9710 0.9004 -0.4970 28 1 2.7554 -1.2154 -1.7720 29 1 2.7558 -2.1342 -0.2476 30 1 5.0117 -1.2534 0.2836 31 1 5.0119 -0.3344 -1.2408 32 1 4.7963 -2.4491 -2.5168 33 1 4.7961 -3.3688 -0.9928 34 1 7.1090 -1.7484 -1.0555 35 1 8.2378 -5.2689 -4.2071 36 1 8.2670 -6.2027 -2.6869 37 1 9.7763 -6.8635 -4.9278 38 1 10.2538 -7.2945 -3.2529 39 1 11.7896 -3.9896 -5.2605 40 1 14.4674 -3.6233 -3.7747 41 1 11.3209 -5.0753 -1.8715 42 1 11.3922 -3.6089 -2.8943 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329329591.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:08 Heat of formation + Delta-G solvation = -126.333935 kcal Electronic energy + Delta-G solvation = -24857.778512 eV Core-core repulsion = 21029.610287 eV Total energy + Delta-G solvation = -3828.168225 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.152 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.74096 -40.01287 -38.83955 -38.11862 -36.96120 -36.03788 -34.63649 -34.22914 -31.92692 -30.64390 -29.66365 -27.71983 -26.11428 -24.60495 -22.98321 -22.36908 -21.52446 -20.72473 -19.14430 -18.77572 -18.19344 -17.92393 -17.34348 -17.05890 -16.74263 -16.67735 -16.24658 -15.85589 -15.51026 -15.07089 -14.85948 -14.66647 -14.65204 -14.45634 -14.02068 -13.90894 -13.56258 -13.50121 -13.28888 -12.94728 -12.85344 -12.72447 -12.50901 -12.41524 -12.34839 -12.22467 -12.18441 -12.08018 -11.97860 -11.41365 -11.20262 -10.73407 -10.54904 -10.31408 -10.22658 -9.61432 -8.24196 -6.40730 0.39601 1.32982 1.43976 1.47494 1.57732 1.85367 1.90230 2.17517 2.39038 2.57436 3.02016 3.16289 3.40479 3.79419 3.88948 4.07627 4.12072 4.17114 4.34421 4.38747 4.48309 4.55228 4.68044 4.75657 4.79598 4.86169 4.97308 4.99650 5.08007 5.12250 5.16570 5.26642 5.35554 5.39323 5.45305 5.49205 5.76045 6.03228 6.11268 6.42130 6.66129 6.69574 6.72617 6.98845 7.28285 7.36272 8.81660 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.041062 B = 0.002223 C = 0.002159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.726684 B =12594.513294 C =12962.895880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C 0.235 3.765 3 C -0.021 4.021 4 C -0.110 4.110 5 C -0.121 4.121 6 C 0.110 3.890 7 N -0.687 5.687 8 C 0.515 3.485 9 O -0.534 6.534 10 C 0.500 3.500 11 O -0.561 6.561 12 N -0.585 5.585 13 C 0.121 3.879 14 C -0.116 4.116 15 C 0.232 3.768 16 O -0.587 6.587 17 C -0.555 4.555 18 H 0.069 0.931 19 C 0.028 3.972 20 N -0.914 5.914 21 Si 0.965 3.035 22 H -0.265 1.265 23 H -0.281 1.281 24 H -0.281 1.281 25 C 0.107 3.893 26 H 0.138 0.862 27 H 0.137 0.863 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.420 0.580 35 H 0.069 0.931 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.092 0.908 39 H 0.374 0.626 40 H 0.270 0.730 41 H 0.056 0.944 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.015 6.155 7.636 17.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.196 5.196 2 C -0.081 4.081 3 C -0.061 4.061 4 C -0.149 4.149 5 C -0.159 4.159 6 C -0.012 4.012 7 N -0.341 5.341 8 C 0.294 3.706 9 O -0.411 6.411 10 C 0.284 3.716 11 O -0.441 6.441 12 N -0.317 5.317 13 C -0.001 4.001 14 C -0.154 4.154 15 C 0.191 3.809 16 O -0.395 6.395 17 C -0.593 4.593 18 H 0.087 0.913 19 C -0.173 4.173 20 N -0.553 5.553 21 Si 0.790 3.210 22 H -0.190 1.190 23 H -0.207 1.207 24 H -0.207 1.207 25 C -0.015 4.015 26 H 0.156 0.844 27 H 0.155 0.845 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.113 0.887 31 H 0.111 0.889 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.258 0.742 35 H 0.087 0.913 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.110 0.890 39 H 0.223 0.777 40 H 0.080 0.920 41 H 0.074 0.926 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -17.306 5.781 7.451 19.709 hybrid contribution 2.168 0.422 0.241 2.222 sum -15.138 6.203 7.692 18.078 Atomic orbital electron populations 1.81294 1.15758 1.11080 1.11470 1.30092 0.96118 0.91009 0.90893 1.19625 0.78245 1.01979 1.06219 1.21370 0.94447 0.97526 1.01569 1.21740 0.95103 0.96740 1.02322 1.21725 0.76558 1.00854 1.02034 1.45743 1.08634 1.24923 1.54762 1.19759 0.87175 0.83510 0.80113 1.90727 1.69690 1.36385 1.44274 1.20327 0.89224 0.81937 0.80112 1.90699 1.70713 1.36388 1.46310 1.48776 1.08974 1.22850 1.51116 1.22177 0.95407 0.86065 0.96479 1.22726 0.93272 0.97391 1.02008 1.19879 0.93171 0.87285 0.80532 1.86126 1.60620 1.50157 1.42609 1.21789 0.91406 0.94017 1.52083 0.91268 1.25797 1.02825 0.95600 0.93054 1.69824 1.29610 1.05952 1.49918 0.85401 0.79017 0.79068 0.77503 1.18958 1.20712 1.20682 1.23018 0.76655 1.01397 1.00440 0.84411 0.84513 0.90941 0.90800 0.88720 0.88928 0.91336 0.91027 0.74240 0.91283 0.89692 0.89724 0.88953 0.77711 0.92032 0.92618 0.92288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -10.60 18.54 20.01 0.37 -10.23 16 2 C 0.24 2.64 15.43 89.44 1.38 4.02 16 3 C -0.02 -0.01 5.70 28.79 0.16 0.16 16 4 C -0.11 -0.29 5.17 30.59 0.16 -0.13 16 5 C -0.12 -0.44 5.33 30.60 0.16 -0.28 16 6 C 0.11 1.42 5.67 86.38 0.49 1.91 16 7 N -0.69 -13.83 5.55 -464.42 -2.58 -16.41 16 8 C 0.51 15.56 7.86 87.27 0.69 16.24 16 9 O -0.53 -17.66 14.15 -3.23 -0.05 -17.71 16 10 C 0.50 19.10 7.92 87.27 0.69 19.79 16 11 O -0.56 -23.46 16.73 -3.26 -0.05 -23.52 16 12 N -0.59 -24.12 3.34 -812.69 -2.71 -26.83 16 13 C 0.12 4.42 5.50 86.68 0.48 4.90 16 14 C -0.12 -4.54 6.13 31.78 0.19 -4.35 16 15 C 0.23 11.07 0.87 -10.15 -0.01 11.06 16 16 O -0.59 -29.83 13.16 -148.98 -1.96 -31.79 16 17 C -0.55 -28.26 8.27 25.60 0.21 -28.05 16 18 H 0.07 3.43 7.79 -2.91 -0.02 3.41 16 19 C 0.03 1.44 5.29 84.65 0.45 1.89 16 20 N -0.91 -48.14 10.69 21.45 0.23 -47.91 16 21 Si 0.96 40.72 29.54 68.60 2.03 42.75 16 22 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 23 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 24 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 25 C 0.11 5.08 5.38 86.85 0.47 5.55 16 26 H 0.14 -0.57 8.14 -2.39 -0.02 -0.59 16 27 H 0.14 -0.53 8.14 -2.38 -0.02 -0.55 16 28 H 0.07 0.29 8.14 -2.39 -0.02 0.27 16 29 H 0.07 0.27 8.14 -2.38 -0.02 0.25 16 30 H 0.09 0.12 8.14 -2.39 -0.02 0.10 16 31 H 0.09 0.16 8.14 -2.39 -0.02 0.14 16 32 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.42 7.30 7.94 -92.70 -0.74 6.57 16 35 H 0.07 2.55 7.59 -2.38 -0.02 2.54 16 36 H 0.08 2.78 7.70 -2.39 -0.02 2.76 16 37 H 0.08 3.15 8.14 -2.39 -0.02 3.13 16 38 H 0.09 3.32 8.03 -2.39 -0.02 3.30 16 39 H 0.37 19.64 7.56 -74.06 -0.56 19.08 16 40 H 0.27 13.60 8.31 -92.70 -0.77 12.83 16 41 H 0.06 2.71 8.03 -2.39 -0.02 2.69 16 42 H 0.06 3.15 7.32 -2.39 -0.02 3.13 16 Total: -1.00 -70.78 361.09 0.56 -70.22 By element: Atomic # 1 Polarization: 28.94 SS G_CDS: -0.24 Total: 28.71 kcal Atomic # 6 Polarization: 27.20 SS G_CDS: 5.52 Total: 32.72 kcal Atomic # 7 Polarization: -96.69 SS G_CDS: -4.69 Total: -101.38 kcal Atomic # 8 Polarization: -70.96 SS G_CDS: -2.06 Total: -73.02 kcal Atomic # 14 Polarization: 40.72 SS G_CDS: 2.03 Total: 42.75 kcal Total: -70.78 0.56 -70.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329329591.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.113 kcal (2) G-P(sol) polarization free energy of solvation -70.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds