Wall clock time and date at job start Fri Apr 10 2020 18:01:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.53005 * 109.47096 * 26.51219 * 3 2 1 5 5 C 1.52994 * 109.47299 * 179.97438 * 4 3 2 6 6 C 1.53000 * 109.47352 * 180.02562 * 5 4 3 7 7 N 1.46506 * 109.47195 * 180.02562 * 6 5 4 8 8 C 1.34777 * 119.99846 * 179.97438 * 7 6 5 9 9 O 1.21350 * 119.99865 * 359.97438 * 8 7 6 10 10 C 1.49449 * 119.99831 * 180.02562 * 8 7 6 11 11 O 1.21349 * 119.99754 * 359.97438 * 10 8 7 12 12 N 1.34772 * 119.99933 * 180.02562 * 10 8 7 13 13 C 1.47021 * 125.64937 * 359.94885 * 12 10 8 14 14 C 1.54370 * 107.28813 * 181.13182 * 13 12 10 15 15 C 1.55147 * 102.92092 * 22.14333 * 14 13 12 16 16 O 1.42905 * 111.00578 * 82.63751 * 15 14 13 17 17 C 1.50702 * 111.00308 * 206.45025 * 15 14 13 18 18 H 1.08002 * 120.00299 * 356.82421 * 17 15 14 19 19 C 1.37884 * 119.99942 * 176.53980 * 17 15 14 20 20 N 1.31514 * 119.99698 * 0.28408 * 19 17 15 21 21 Si 1.86794 * 119.99837 * 180.27476 * 19 17 15 22 22 H 1.48496 * 109.47341 * 0.02562 * 21 19 17 23 23 H 1.48508 * 109.46983 * 120.00379 * 21 19 17 24 24 H 1.48503 * 109.47491 * 240.00192 * 21 19 17 25 25 C 1.47423 * 125.64837 * 179.97438 * 12 10 8 26 26 H 1.08998 * 109.47208 * 266.52198 * 3 2 1 27 27 H 1.09001 * 109.47480 * 146.51098 * 3 2 1 28 28 H 1.09002 * 109.46956 * 60.00149 * 4 3 2 29 29 H 1.09000 * 109.47308 * 300.00543 * 4 3 2 30 30 H 1.09002 * 109.46809 * 60.00287 * 5 4 3 31 31 H 1.09000 * 109.47570 * 300.00611 * 5 4 3 32 32 H 1.09002 * 109.47198 * 60.00196 * 6 5 4 33 33 H 1.08997 * 109.47249 * 300.00171 * 6 5 4 34 34 H 0.96999 * 119.99794 * 359.97438 * 7 6 5 35 35 H 1.09001 * 109.88518 * 300.52094 * 13 12 10 36 36 H 1.09002 * 109.88165 * 61.68403 * 13 12 10 37 37 H 1.09001 * 110.70699 * 263.79361 * 14 13 12 38 38 H 1.09008 * 110.75075 * 140.51110 * 14 13 12 39 39 H 0.96701 * 113.99475 * 183.17547 * 16 15 14 40 40 H 0.97005 * 119.99651 * 179.97438 * 20 19 17 41 41 H 1.08996 * 110.36708 * 36.99367 * 25 12 10 42 42 H 1.08999 * 110.36888 * 274.67114 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1186 -1.2900 -0.6439 5 6 4.6486 -1.2890 -0.6445 6 6 5.1591 -2.5793 -1.2890 7 7 6.6242 -2.5787 -1.2890 8 6 7.2985 -3.6229 -1.8101 9 8 6.6921 -4.5637 -2.2788 10 6 8.7930 -3.6225 -1.8096 11 8 9.3993 -2.6818 -1.3404 12 7 9.4673 -4.6664 -2.3310 13 6 8.8616 -5.8652 -2.9290 14 6 10.0155 -6.7951 -3.3614 15 6 11.1950 -6.3209 -2.4720 16 8 11.1307 -6.9173 -1.1750 17 6 12.5189 -6.6103 -3.1314 18 1 12.5491 -7.1349 -4.0749 19 6 13.6914 -6.2000 -2.5329 20 7 13.6546 -5.5611 -1.3840 21 14 15.3319 -6.5519 -3.3540 22 1 15.1018 -7.2779 -4.6287 23 1 16.0305 -5.2715 -3.6331 24 1 16.1677 -7.3855 -2.4530 25 6 10.9344 -4.7955 -2.3959 26 1 2.9713 0.0632 1.0257 27 1 2.9710 0.8579 -0.5670 28 1 2.7553 -1.3526 -1.6697 29 1 2.7556 -2.1472 -0.0770 30 1 5.0122 -1.2262 0.3811 31 1 5.0112 -0.4318 -1.2117 32 1 4.7955 -2.6418 -2.3147 33 1 4.7966 -3.4368 -0.7222 34 1 7.1088 -1.8267 -0.9140 35 1 8.2351 -6.3700 -2.1937 36 1 8.2653 -5.5853 -3.7975 37 1 10.2480 -6.6555 -4.4171 38 1 9.7704 -7.8368 -3.1538 39 1 11.8195 -6.6138 -0.5680 40 1 14.4795 -5.2728 -0.9628 41 1 11.3921 -4.3769 -1.4996 42 1 11.3200 -4.2997 -3.2867 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329329593.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:17 Heat of formation + Delta-G solvation = -126.468895 kcal Electronic energy + Delta-G solvation = -24852.878674 eV Core-core repulsion = 21024.704596 eV Total energy + Delta-G solvation = -3828.174077 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.152 amu Computer time = 2.30 seconds Orbital eigenvalues (eV) -41.75046 -40.01573 -38.84243 -38.11878 -36.96435 -36.06210 -34.63787 -34.19285 -31.93024 -30.64483 -29.68828 -27.71938 -26.11683 -24.60380 -22.98335 -22.36954 -21.51957 -20.72822 -19.17355 -18.78017 -18.19278 -17.92783 -17.34663 -17.05119 -16.74457 -16.67608 -16.24901 -15.84714 -15.51119 -15.06457 -14.86388 -14.67364 -14.65411 -14.45152 -14.02241 -13.91939 -13.56203 -13.49401 -13.30502 -12.94789 -12.85750 -12.72705 -12.51022 -12.41612 -12.32881 -12.22469 -12.18271 -12.09028 -11.97868 -11.41388 -11.22056 -10.72632 -10.55405 -10.32283 -10.22730 -9.61034 -8.24957 -6.41310 0.39326 1.32824 1.44054 1.47553 1.57849 1.85326 1.90195 2.17226 2.38897 2.57681 3.01352 3.16330 3.40556 3.79366 3.88914 4.08697 4.12027 4.17130 4.34556 4.38720 4.48284 4.55176 4.67722 4.75191 4.79546 4.86152 4.97280 4.98190 5.07844 5.12195 5.16609 5.26605 5.35700 5.39283 5.44764 5.49150 5.76226 6.02118 6.10376 6.41918 6.65588 6.69557 6.72340 6.98589 7.29702 7.37426 8.81199 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.041395 B = 0.002217 C = 0.002156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.247611 B =12625.269039 C =12983.348449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C 0.235 3.765 3 C -0.021 4.021 4 C -0.110 4.110 5 C -0.121 4.121 6 C 0.110 3.890 7 N -0.687 5.687 8 C 0.515 3.485 9 O -0.534 6.534 10 C 0.500 3.500 11 O -0.561 6.561 12 N -0.584 5.584 13 C 0.120 3.880 14 C -0.116 4.116 15 C 0.232 3.768 16 O -0.589 6.589 17 C -0.555 4.555 18 H 0.070 0.930 19 C 0.028 3.972 20 N -0.915 5.915 21 Si 0.966 3.034 22 H -0.265 1.265 23 H -0.281 1.281 24 H -0.281 1.281 25 C 0.106 3.894 26 H 0.137 0.863 27 H 0.138 0.862 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.092 0.908 31 H 0.094 0.906 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.420 0.580 35 H 0.068 0.932 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.084 0.916 39 H 0.376 0.624 40 H 0.271 0.729 41 H 0.056 0.944 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.950 9.878 0.944 17.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.196 5.196 2 C -0.081 4.081 3 C -0.061 4.061 4 C -0.149 4.149 5 C -0.159 4.159 6 C -0.012 4.012 7 N -0.341 5.341 8 C 0.294 3.706 9 O -0.411 6.411 10 C 0.284 3.716 11 O -0.441 6.441 12 N -0.316 5.316 13 C -0.001 4.001 14 C -0.154 4.154 15 C 0.191 3.809 16 O -0.397 6.397 17 C -0.593 4.593 18 H 0.088 0.912 19 C -0.173 4.173 20 N -0.555 5.555 21 Si 0.791 3.209 22 H -0.189 1.189 23 H -0.207 1.207 24 H -0.207 1.207 25 C -0.017 4.017 26 H 0.155 0.845 27 H 0.156 0.844 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.111 0.889 31 H 0.113 0.887 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.258 0.742 35 H 0.087 0.913 36 H 0.103 0.897 37 H 0.111 0.889 38 H 0.103 0.897 39 H 0.226 0.774 40 H 0.080 0.920 41 H 0.075 0.925 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -17.259 9.539 0.746 19.734 hybrid contribution 2.179 0.404 0.233 2.229 sum -15.080 9.943 0.979 18.089 Atomic orbital electron populations 1.81295 1.15756 1.11028 1.11523 1.30090 0.96117 0.91023 0.90880 1.19624 0.78248 1.01398 1.06799 1.21372 0.94446 0.96890 1.02205 1.21738 0.95105 0.95991 1.03071 1.21726 0.76553 1.00566 1.02326 1.45745 1.08637 1.20604 1.59074 1.19759 0.87173 0.83914 0.79718 1.90728 1.69681 1.35012 1.45640 1.20336 0.89236 0.82390 0.79665 1.90695 1.70714 1.35252 1.47450 1.48703 1.08929 1.18529 1.55450 1.22146 0.95395 0.84523 0.98085 1.22740 0.93282 0.99543 0.99843 1.19881 0.93219 0.86199 0.81588 1.86103 1.57420 1.70521 1.25670 1.21814 0.91175 1.38300 1.08012 0.91168 1.25808 1.02877 0.93326 0.95305 1.69760 1.29463 1.38768 1.17486 0.85387 0.78934 0.77826 0.78755 1.18922 1.20688 1.20691 1.23050 0.76766 1.01286 1.00556 0.84516 0.84405 0.90797 0.90945 0.88928 0.88718 0.91012 0.91347 0.74240 0.91322 0.89686 0.88930 0.89745 0.77415 0.91950 0.92546 0.92416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -10.60 18.54 20.01 0.37 -10.23 16 2 C 0.24 2.64 15.43 89.44 1.38 4.02 16 3 C -0.02 -0.01 5.70 28.79 0.16 0.16 16 4 C -0.11 -0.29 5.17 30.59 0.16 -0.13 16 5 C -0.12 -0.44 5.33 30.59 0.16 -0.28 16 6 C 0.11 1.42 5.67 86.38 0.49 1.91 16 7 N -0.69 -13.83 5.55 -464.40 -2.58 -16.41 16 8 C 0.51 15.56 7.86 87.27 0.69 16.25 16 9 O -0.53 -17.67 14.12 -3.25 -0.05 -17.72 16 10 C 0.50 19.09 7.91 87.27 0.69 19.78 16 11 O -0.56 -23.44 16.73 -3.24 -0.05 -23.50 16 12 N -0.58 -24.09 3.33 -813.24 -2.70 -26.79 16 13 C 0.12 4.43 5.49 86.75 0.48 4.90 16 14 C -0.12 -4.55 6.13 31.80 0.19 -4.35 16 15 C 0.23 11.09 0.88 -10.14 -0.01 11.08 16 16 O -0.59 -30.14 13.17 -148.98 -1.96 -32.10 16 17 C -0.55 -28.23 8.26 25.60 0.21 -28.01 16 18 H 0.07 3.47 7.78 -2.91 -0.02 3.44 16 19 C 0.03 1.41 5.29 84.66 0.45 1.86 16 20 N -0.92 -48.20 10.69 21.45 0.23 -47.97 16 21 Si 0.97 40.64 29.54 68.60 2.03 42.67 16 22 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 23 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 24 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 25 C 0.11 5.01 5.50 86.86 0.48 5.49 16 26 H 0.14 -0.53 8.14 -2.39 -0.02 -0.55 16 27 H 0.14 -0.57 8.14 -2.39 -0.02 -0.59 16 28 H 0.07 0.27 8.14 -2.39 -0.02 0.25 16 29 H 0.07 0.29 8.14 -2.39 -0.02 0.27 16 30 H 0.09 0.16 8.14 -2.39 -0.02 0.14 16 31 H 0.09 0.12 8.14 -2.39 -0.02 0.10 16 32 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.42 7.30 7.94 -92.71 -0.74 6.56 16 35 H 0.07 2.55 7.58 -2.39 -0.02 2.53 16 36 H 0.08 2.78 7.70 -2.39 -0.02 2.76 16 37 H 0.09 3.32 8.03 -2.39 -0.02 3.30 16 38 H 0.08 3.15 8.14 -2.38 -0.02 3.13 16 39 H 0.38 19.99 7.26 -74.06 -0.54 19.46 16 40 H 0.27 13.61 8.31 -92.70 -0.77 12.84 16 41 H 0.06 3.01 7.47 -2.39 -0.02 2.99 16 42 H 0.06 2.79 8.03 -2.39 -0.02 2.77 16 Total: -1.00 -70.78 360.98 0.60 -70.18 By element: Atomic # 1 Polarization: 29.41 SS G_CDS: -0.21 Total: 29.19 kcal Atomic # 6 Polarization: 27.13 SS G_CDS: 5.53 Total: 32.67 kcal Atomic # 7 Polarization: -96.72 SS G_CDS: -4.68 Total: -101.40 kcal Atomic # 8 Polarization: -71.25 SS G_CDS: -2.06 Total: -73.31 kcal Atomic # 14 Polarization: 40.64 SS G_CDS: 2.03 Total: 42.67 kcal Total: -70.78 0.60 -70.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329329593.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.286 kcal (2) G-P(sol) polarization free energy of solvation -70.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.31 seconds