Wall clock time and date at job start Fri Apr 10 2020 18:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86806 * 119.99629 * 2 1 4 4 H 1.48500 * 109.47017 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47139 * 299.99860 * 3 2 1 6 6 H 1.48502 * 109.47245 * 60.00032 * 3 2 1 7 7 C 1.37869 * 120.00343 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99948 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00179 * 0.02562 * 7 2 1 10 10 N 1.46897 * 109.47428 * 179.97438 * 9 7 2 11 11 C 1.46897 * 111.00156 * 169.99915 * 10 9 7 12 12 C 1.53241 * 109.33973 * 187.25232 * 11 10 9 13 13 N 1.47075 * 108.52064 * 306.17201 * 12 11 10 14 14 C 1.34780 * 120.87669 * 231.18923 * 13 12 11 15 15 O 1.21280 * 120.00423 * 359.97438 * 14 13 12 16 16 C 1.50701 * 119.99795 * 180.02562 * 14 13 12 17 17 C 1.52997 * 109.47212 * 179.97438 * 16 14 13 18 18 H 1.09005 * 110.53944 * 54.29727 * 17 16 14 19 19 C 1.54226 * 110.60880 * 177.14798 * 17 16 14 20 20 C 1.51308 * 103.55958 * 118.51811 * 19 17 16 21 21 O 1.21220 * 125.40183 * 180.02562 * 20 19 17 22 22 N 1.33881 * 109.20609 * 0.02562 * 20 19 17 23 23 C 1.34221 * 114.52548 * 0.09277 * 22 20 19 24 24 O 1.21229 * 125.58445 * 179.97438 * 23 22 20 25 25 C 1.47074 * 118.24014 * 51.45789 * 13 12 11 26 26 C 1.46904 * 110.99901 * 294.29982 * 10 9 7 27 27 H 0.96998 * 120.00461 * 359.97438 * 1 2 3 28 28 H 1.08994 * 109.46875 * 59.99386 * 9 7 2 29 29 H 1.08997 * 109.46849 * 300.00156 * 9 7 2 30 30 H 1.09001 * 109.49120 * 67.28868 * 11 10 9 31 31 H 1.09003 * 109.48945 * 307.21315 * 11 10 9 32 32 H 1.09003 * 109.62612 * 186.45868 * 12 11 10 33 33 H 1.09003 * 109.62821 * 65.87958 * 12 11 10 34 34 H 1.09002 * 109.47060 * 299.99722 * 16 14 13 35 35 H 1.09001 * 109.47380 * 59.99809 * 16 14 13 36 36 H 1.09006 * 110.60613 * 237.03629 * 19 17 16 37 37 H 1.08996 * 110.60307 * 359.84221 * 19 17 16 38 38 H 0.97004 * 122.76370 * 180.02562 * 22 20 19 39 39 H 1.08994 * 109.63016 * 68.25422 * 25 13 12 40 40 H 1.09001 * 109.62513 * 188.83332 * 25 13 12 41 41 H 1.08997 * 109.49121 * 292.70801 * 26 10 9 42 42 H 1.08999 * 109.49142 * 52.78600 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3466 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3966 1.2125 7 6 2.0045 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2058 -3.6156 0.0005 11 6 1.5214 -4.8934 0.2387 12 6 2.5641 -6.0031 0.4115 13 7 3.4618 -5.9860 -0.7534 14 6 3.7121 -7.1122 -1.4503 15 8 3.1947 -8.1579 -1.1192 16 6 4.6358 -7.0721 -2.6404 17 6 4.7478 -8.4725 -3.2464 18 1 3.7592 -8.8695 -3.4773 19 6 5.6316 -8.4481 -4.5100 20 6 6.7827 -9.3640 -4.1556 21 8 7.7183 -9.6284 -4.8795 22 7 6.6041 -9.8362 -2.9156 23 6 5.4883 -9.4016 -2.3093 24 8 5.1310 -9.7014 -1.1903 25 6 4.0839 -4.7088 -1.1339 26 6 2.9768 -3.6490 -1.2494 27 1 -0.4851 0.8400 0.0004 28 1 0.6248 -2.5570 -0.8896 29 1 0.6242 -2.5567 0.8903 30 1 0.8797 -5.1263 -0.6111 31 1 0.9163 -4.8190 1.1422 32 1 2.0635 -6.9693 0.4739 33 1 3.1398 -5.8263 1.3200 34 1 4.2379 -6.3839 -3.3861 35 1 5.6223 -6.7339 -2.3235 36 1 5.0837 -8.8354 -5.3690 37 1 5.9893 -7.4378 -4.7085 38 1 7.2292 -10.4438 -2.4901 39 1 4.8029 -4.4101 -0.3711 40 1 4.5887 -4.8190 -2.0937 41 1 2.3149 -3.8992 -2.0785 42 1 3.4272 -2.6721 -1.4251 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333984154.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:34 Heat of formation + Delta-G solvation = -89.807728 kcal Electronic energy + Delta-G solvation = -25701.618583 eV Core-core repulsion = 21875.034253 eV Total energy + Delta-G solvation = -3826.584330 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.152 amu Computer time = 1.96 seconds Orbital eigenvalues (eV) -42.14953 -39.97221 -38.82573 -37.52577 -36.18229 -34.42441 -33.93208 -32.47008 -30.98073 -29.23922 -28.05637 -25.87488 -25.04485 -23.30865 -22.31193 -22.02830 -21.24586 -20.35856 -18.68815 -18.20266 -17.25891 -16.92626 -16.50754 -16.40070 -15.80957 -15.58766 -14.97395 -14.82164 -14.48350 -14.43507 -14.31545 -13.94958 -13.89455 -13.67709 -13.23050 -13.09830 -12.79722 -12.40873 -12.20378 -11.96157 -11.65945 -11.33266 -11.09866 -11.00900 -11.00289 -10.78423 -10.67988 -10.62114 -10.54770 -10.25999 -9.93997 -9.63533 -9.30928 -8.54346 -8.44563 -7.37390 -6.10699 -4.13001 1.18054 2.37781 2.42504 2.69796 3.02232 3.25256 3.33353 3.36763 3.68125 3.82356 3.93162 4.24314 4.34752 4.55656 4.72596 4.79326 4.90786 5.06049 5.19010 5.23526 5.27207 5.35417 5.41744 5.48974 5.60490 5.63564 5.73702 5.84244 6.02133 6.25200 6.28120 6.39789 6.41241 6.65229 6.96189 7.17640 7.22890 7.52119 7.55329 7.70029 7.97118 8.07358 8.25286 8.42584 8.94543 9.51924 11.00125 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.025356 B = 0.002784 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.006270 B =10055.436925 C =10788.040028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.898 3.102 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.510 4.510 8 H 0.064 0.936 9 C 0.193 3.807 10 N -0.536 5.536 11 C 0.041 3.959 12 C 0.120 3.880 13 N -0.609 5.609 14 C 0.505 3.495 15 O -0.524 6.524 16 C -0.128 4.128 17 C -0.109 4.109 18 H 0.133 0.867 19 C -0.156 4.156 20 C 0.532 3.468 21 O -0.490 6.490 22 N -0.686 5.686 23 C 0.525 3.475 24 O -0.441 6.441 25 C 0.108 3.892 26 C 0.050 3.950 27 H 0.261 0.739 28 H -0.009 1.009 29 H 0.032 0.968 30 H 0.026 0.974 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.071 0.929 34 H 0.114 0.886 35 H 0.098 0.902 36 H 0.125 0.875 37 H 0.125 0.875 38 H 0.413 0.587 39 H 0.076 0.924 40 H 0.079 0.921 41 H 0.025 0.975 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.770 -15.517 -8.734 20.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.548 4.548 8 H 0.083 0.917 9 C 0.069 3.931 10 N -0.262 5.262 11 C -0.088 4.088 12 C -0.003 4.003 13 N -0.343 5.343 14 C 0.292 3.708 15 O -0.400 6.400 16 C -0.168 4.168 17 C -0.131 4.131 18 H 0.151 0.849 19 C -0.196 4.196 20 C 0.320 3.680 21 O -0.362 6.362 22 N -0.353 5.353 23 C 0.310 3.690 24 O -0.307 6.307 25 C -0.015 4.015 26 C -0.079 4.079 27 H 0.071 0.929 28 H 0.009 0.991 29 H 0.050 0.950 30 H 0.045 0.955 31 H 0.099 0.901 32 H 0.107 0.893 33 H 0.089 0.911 34 H 0.132 0.868 35 H 0.116 0.884 36 H 0.143 0.857 37 H 0.143 0.857 38 H 0.252 0.748 39 H 0.094 0.906 40 H 0.097 0.903 41 H 0.044 0.956 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 10.820 -16.067 -7.993 20.955 hybrid contribution 0.085 0.706 -0.414 0.823 sum 10.906 -15.361 -8.407 20.629 Atomic orbital electron populations 1.69962 1.06110 1.26801 1.50785 1.24998 0.94857 0.99389 0.95347 0.86446 0.80033 0.83391 0.77563 1.19619 1.21114 1.20988 1.21169 0.93482 0.89847 1.50327 0.91746 1.19729 0.89994 0.87170 0.96245 1.62066 1.28151 1.02771 1.33162 1.22408 0.94971 0.90499 1.00913 1.21731 0.91639 0.99452 0.87441 1.48184 1.47059 1.08467 1.30595 1.20324 0.82656 0.83613 0.84198 1.90768 1.51201 1.29353 1.68719 1.21646 1.01499 0.95854 0.97845 1.21844 1.01996 0.95904 0.93371 0.84927 1.22611 0.94988 1.02495 0.99468 1.20750 0.86956 0.79951 0.80382 1.90819 1.33235 1.59118 1.53039 1.44968 1.25840 1.46515 1.17993 1.20779 0.80255 0.80722 0.87216 1.90905 1.67227 1.55379 1.17211 1.22118 0.96248 0.82828 1.00324 1.22409 0.95050 0.98993 0.91448 0.92885 0.99107 0.95023 0.95547 0.90107 0.89350 0.91072 0.86771 0.88369 0.85717 0.85691 0.74754 0.90590 0.90309 0.95638 0.88493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.82 13.29 55.43 0.74 -25.08 16 2 C 0.06 1.51 5.46 -17.82 -0.10 1.42 16 3 Si 0.90 20.68 29.54 -169.99 -5.02 15.66 16 4 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.51 -13.49 8.41 -34.44 -0.29 -13.78 16 8 H 0.06 1.67 7.13 -52.48 -0.37 1.29 16 9 C 0.19 4.77 4.72 -4.98 -0.02 4.75 16 10 N -0.54 -10.66 4.62 -235.47 -1.09 -11.75 16 11 C 0.04 0.71 5.62 -3.70 -0.02 0.69 16 12 C 0.12 1.81 6.60 -3.60 -0.02 1.79 16 13 N -0.61 -8.39 3.00 -172.19 -0.52 -8.91 16 14 C 0.51 6.57 7.39 -10.98 -0.08 6.48 16 15 O -0.52 -8.61 13.21 -16.71 -0.22 -8.83 16 16 C -0.13 -0.99 3.39 -27.88 -0.09 -1.09 16 17 C -0.11 -0.77 2.69 -90.83 -0.24 -1.02 16 18 H 0.13 0.95 7.96 -51.93 -0.41 0.53 16 19 C -0.16 -0.69 6.67 -26.94 -0.18 -0.87 16 20 C 0.53 3.97 8.55 -11.09 -0.09 3.87 16 21 O -0.49 -5.31 18.02 5.61 0.10 -5.21 16 22 N -0.69 -5.14 5.49 -11.32 -0.06 -5.20 16 23 C 0.52 5.14 7.74 -10.93 -0.08 5.05 16 24 O -0.44 -6.37 15.65 -16.66 -0.26 -6.63 16 25 C 0.11 1.35 6.53 -3.37 -0.02 1.33 16 26 C 0.05 0.84 5.47 -3.46 -0.02 0.82 16 27 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 28 H -0.01 -0.24 8.12 -51.93 -0.42 -0.66 16 29 H 0.03 0.84 7.97 -51.93 -0.41 0.43 16 30 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.08 1.37 7.99 -51.93 -0.41 0.96 16 32 H 0.09 1.35 7.06 -51.93 -0.37 0.98 16 33 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 34 H 0.11 0.61 7.67 -51.93 -0.40 0.21 16 35 H 0.10 0.62 7.98 -51.93 -0.41 0.21 16 36 H 0.12 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.13 0.33 7.74 -51.93 -0.40 -0.08 16 38 H 0.41 2.61 8.96 -40.82 -0.37 2.24 16 39 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.08 0.69 6.02 -51.93 -0.31 0.38 16 41 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.10 1.73 6.67 -51.93 -0.35 1.39 16 LS Contribution 343.67 15.07 5.18 5.18 Total: -1.00 -35.14 343.67 -8.32 -43.46 By element: Atomic # 1 Polarization: 3.75 SS G_CDS: -5.89 Total: -2.14 kcal Atomic # 6 Polarization: 10.73 SS G_CDS: -1.28 Total: 9.45 kcal Atomic # 7 Polarization: -50.01 SS G_CDS: -0.93 Total: -50.94 kcal Atomic # 8 Polarization: -20.29 SS G_CDS: -0.38 Total: -20.67 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -35.14 -8.32 -43.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333984154.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.347 kcal (2) G-P(sol) polarization free energy of solvation -35.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.96 seconds