Wall clock time and date at job start Fri Apr 10 2020 18:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86806 * 119.99629 * 2 1 4 4 H 1.48500 * 109.47017 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47139 * 299.99860 * 3 2 1 6 6 H 1.48502 * 109.47245 * 60.00032 * 3 2 1 7 7 C 1.37869 * 120.00343 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99948 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00179 * 0.02562 * 7 2 1 10 10 N 1.46897 * 109.47428 * 179.97438 * 9 7 2 11 11 C 1.46897 * 111.00156 * 169.99915 * 10 9 7 12 12 C 1.53241 * 109.33973 * 187.25232 * 11 10 9 13 13 N 1.47075 * 108.52064 * 306.17201 * 12 11 10 14 14 C 1.34780 * 120.87669 * 231.18923 * 13 12 11 15 15 O 1.21280 * 120.00423 * 359.97438 * 14 13 12 16 16 C 1.50701 * 119.99795 * 180.02562 * 14 13 12 17 17 C 1.52997 * 109.47212 * 179.97438 * 16 14 13 18 18 H 1.09005 * 110.53944 * 54.29727 * 17 16 14 19 19 C 1.54226 * 110.60880 * 177.14798 * 17 16 14 20 20 C 1.51308 * 103.55958 * 118.51811 * 19 17 16 21 21 O 1.21220 * 125.40183 * 180.02562 * 20 19 17 22 22 N 1.33881 * 109.20609 * 0.02562 * 20 19 17 23 23 C 1.34221 * 114.52548 * 0.09277 * 22 20 19 24 24 O 1.21229 * 125.58445 * 179.97438 * 23 22 20 25 25 C 1.47074 * 118.24014 * 51.45789 * 13 12 11 26 26 C 1.46904 * 110.99901 * 294.29982 * 10 9 7 27 27 H 0.96998 * 120.00461 * 359.97438 * 1 2 3 28 28 H 1.08994 * 109.46875 * 59.99386 * 9 7 2 29 29 H 1.08997 * 109.46849 * 300.00156 * 9 7 2 30 30 H 1.09001 * 109.49120 * 67.28868 * 11 10 9 31 31 H 1.09003 * 109.48945 * 307.21315 * 11 10 9 32 32 H 1.09003 * 109.62612 * 186.45868 * 12 11 10 33 33 H 1.09003 * 109.62821 * 65.87958 * 12 11 10 34 34 H 1.09002 * 109.47060 * 299.99722 * 16 14 13 35 35 H 1.09001 * 109.47380 * 59.99809 * 16 14 13 36 36 H 1.09006 * 110.60613 * 237.03629 * 19 17 16 37 37 H 1.08996 * 110.60307 * 359.84221 * 19 17 16 38 38 H 0.97004 * 122.76370 * 180.02562 * 22 20 19 39 39 H 1.08994 * 109.63016 * 68.25422 * 25 13 12 40 40 H 1.09001 * 109.62513 * 188.83332 * 25 13 12 41 41 H 1.08997 * 109.49121 * 292.70801 * 26 10 9 42 42 H 1.08999 * 109.49142 * 52.78600 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3466 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3966 1.2125 7 6 2.0045 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2058 -3.6156 0.0005 11 6 1.5214 -4.8934 0.2387 12 6 2.5641 -6.0031 0.4115 13 7 3.4618 -5.9860 -0.7534 14 6 3.7121 -7.1122 -1.4503 15 8 3.1947 -8.1579 -1.1192 16 6 4.6358 -7.0721 -2.6404 17 6 4.7478 -8.4725 -3.2464 18 1 3.7592 -8.8695 -3.4773 19 6 5.6316 -8.4481 -4.5100 20 6 6.7827 -9.3640 -4.1556 21 8 7.7183 -9.6284 -4.8795 22 7 6.6041 -9.8362 -2.9156 23 6 5.4883 -9.4016 -2.3093 24 8 5.1310 -9.7014 -1.1903 25 6 4.0839 -4.7088 -1.1339 26 6 2.9768 -3.6490 -1.2494 27 1 -0.4851 0.8400 0.0004 28 1 0.6248 -2.5570 -0.8896 29 1 0.6242 -2.5567 0.8903 30 1 0.8797 -5.1263 -0.6111 31 1 0.9163 -4.8190 1.1422 32 1 2.0635 -6.9693 0.4739 33 1 3.1398 -5.8263 1.3200 34 1 4.2379 -6.3839 -3.3861 35 1 5.6223 -6.7339 -2.3235 36 1 5.0837 -8.8354 -5.3690 37 1 5.9893 -7.4378 -4.7085 38 1 7.2292 -10.4438 -2.4901 39 1 4.8029 -4.4101 -0.3711 40 1 4.5887 -4.8190 -2.0937 41 1 2.3149 -3.8992 -2.0785 42 1 3.4272 -2.6721 -1.4251 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333984154.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:31 Heat of formation + Delta-G solvation = -116.993892 kcal Electronic energy + Delta-G solvation = -25702.797464 eV Core-core repulsion = 21875.034253 eV Total energy + Delta-G solvation = -3827.763210 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.152 amu Computer time = 2.01 seconds Orbital eigenvalues (eV) -42.80315 -41.02920 -39.64098 -38.83071 -36.93771 -35.89678 -34.62557 -34.30308 -32.20157 -30.25130 -29.38313 -27.22805 -26.02884 -24.57415 -23.83221 -22.71683 -22.27808 -21.37978 -19.73100 -18.92945 -18.46860 -18.12642 -17.75420 -17.21492 -16.74263 -16.60224 -16.49921 -15.97409 -15.79617 -15.48484 -15.27552 -15.22733 -14.93436 -14.75384 -14.24069 -14.09390 -13.85055 -13.62063 -13.37438 -13.10302 -12.88809 -12.71617 -12.57128 -12.37549 -12.27077 -12.10597 -12.05089 -11.72042 -11.67589 -11.36065 -11.24023 -11.00294 -10.66550 -10.60836 -9.66269 -9.00667 -8.18385 -6.28721 0.51758 1.44739 1.46335 1.59020 1.73998 1.75072 1.83329 2.04174 2.42924 3.14205 3.15283 3.24776 3.28036 3.34899 3.71210 3.79348 4.06088 4.09100 4.26705 4.31426 4.35422 4.49403 4.53987 4.58536 4.69203 4.78732 4.86083 4.89890 4.93836 4.99520 5.07059 5.08114 5.24240 5.26889 5.52186 5.66574 5.67263 6.05067 6.28859 6.33773 6.53695 6.60251 6.88255 6.90214 7.26487 7.41709 8.93191 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.025356 B = 0.002784 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.006270 B =10055.436925 C =10788.040028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C 0.000 4.000 3 Si 0.970 3.030 4 H -0.257 1.257 5 H -0.280 1.280 6 H -0.284 1.284 7 C -0.518 4.518 8 H 0.071 0.929 9 C 0.208 3.792 10 N -0.543 5.543 11 C 0.046 3.954 12 C 0.129 3.871 13 N -0.616 5.616 14 C 0.498 3.502 15 O -0.563 6.563 16 C -0.124 4.124 17 C -0.104 4.104 18 H 0.133 0.867 19 C -0.137 4.137 20 C 0.534 3.466 21 O -0.525 6.525 22 N -0.682 5.682 23 C 0.524 3.476 24 O -0.496 6.496 25 C 0.119 3.881 26 C 0.047 3.953 27 H 0.263 0.737 28 H -0.039 1.039 29 H 0.000 1.000 30 H 0.017 0.983 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.072 0.928 34 H 0.153 0.847 35 H 0.122 0.878 36 H 0.152 0.848 37 H 0.157 0.843 38 H 0.415 0.585 39 H 0.079 0.921 40 H 0.130 0.870 41 H 0.021 0.979 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.088 -14.848 -10.805 22.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.198 4.198 3 Si 0.795 3.205 4 H -0.180 1.180 5 H -0.206 1.206 6 H -0.210 1.210 7 C -0.556 4.556 8 H 0.089 0.911 9 C 0.082 3.918 10 N -0.268 5.268 11 C -0.083 4.083 12 C 0.005 3.995 13 N -0.350 5.350 14 C 0.288 3.712 15 O -0.441 6.441 16 C -0.164 4.164 17 C -0.125 4.125 18 H 0.151 0.849 19 C -0.176 4.176 20 C 0.325 3.675 21 O -0.399 6.399 22 N -0.348 5.348 23 C 0.312 3.688 24 O -0.367 6.367 25 C -0.003 4.003 26 C -0.081 4.081 27 H 0.072 0.928 28 H -0.022 1.022 29 H 0.018 0.982 30 H 0.036 0.964 31 H 0.092 0.908 32 H 0.103 0.897 33 H 0.090 0.910 34 H 0.170 0.830 35 H 0.140 0.860 36 H 0.169 0.831 37 H 0.175 0.825 38 H 0.254 0.746 39 H 0.097 0.903 40 H 0.148 0.852 41 H 0.040 0.960 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 13.178 -15.413 -10.095 22.653 hybrid contribution -0.662 0.399 0.246 0.811 sum 12.516 -15.014 -9.850 21.888 Atomic orbital electron populations 1.70102 1.07936 1.27827 1.51989 1.25941 0.95661 1.03344 0.94877 0.85316 0.79284 0.78475 0.77425 1.18028 1.20578 1.21050 1.21492 0.93873 0.90595 1.49675 0.91069 1.19364 0.90112 0.89014 0.93290 1.61991 1.27034 1.02372 1.35371 1.22389 0.95574 0.90119 1.00209 1.21474 0.91421 0.97938 0.88620 1.48306 1.46954 1.09472 1.30247 1.21296 0.82568 0.82432 0.84929 1.90763 1.52806 1.30695 1.69882 1.21804 1.01332 0.97049 0.96194 1.21865 1.02207 0.94837 0.93631 0.84894 1.22693 0.92846 1.03450 0.98579 1.21273 0.87088 0.79624 0.79547 1.90818 1.34899 1.60472 1.53731 1.45003 1.25356 1.46172 1.18220 1.21304 0.80385 0.80379 0.86731 1.90886 1.68588 1.57462 1.19714 1.22155 0.94359 0.80639 1.03171 1.22500 0.95715 1.00264 0.89657 0.92792 1.02154 0.98198 0.96429 0.90801 0.89748 0.90989 0.82966 0.85981 0.83061 0.82508 0.74602 0.90312 0.85205 0.96027 0.89558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.12 13.29 21.44 0.28 -54.84 16 2 C 0.00 -0.03 5.46 84.65 0.46 0.44 16 3 Si 0.97 42.13 29.54 68.60 2.03 44.15 16 4 H -0.26 -10.42 7.11 99.48 0.71 -9.72 16 5 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 6 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 7 C -0.52 -27.65 8.41 25.60 0.22 -27.43 16 8 H 0.07 3.63 7.13 -2.91 -0.02 3.61 16 9 C 0.21 10.66 4.72 85.56 0.40 11.06 16 10 N -0.54 -21.79 4.62 -898.89 -4.15 -25.95 16 11 C 0.05 1.63 5.62 86.38 0.49 2.12 16 12 C 0.13 3.87 6.60 86.35 0.57 4.44 16 13 N -0.62 -15.71 3.00 -817.07 -2.45 -18.17 16 14 C 0.50 11.77 7.39 87.66 0.65 12.42 16 15 O -0.56 -18.11 13.21 18.25 0.24 -17.87 16 16 C -0.12 -1.34 3.39 29.85 0.10 -1.24 16 17 C -0.10 -1.09 2.69 -10.93 -0.03 -1.12 16 18 H 0.13 1.49 7.96 -2.38 -0.02 1.48 16 19 C -0.14 -0.54 6.67 30.46 0.20 -0.33 16 20 C 0.53 6.45 8.55 87.99 0.75 7.20 16 21 O -0.52 -10.25 18.02 -2.85 -0.05 -10.30 16 22 N -0.68 -9.11 5.49 -427.37 -2.34 -11.45 16 23 C 0.52 9.46 7.74 87.94 0.68 10.14 16 24 O -0.50 -14.35 15.65 18.41 0.29 -14.06 16 25 C 0.12 2.59 6.53 86.50 0.57 3.15 16 26 C 0.05 1.52 5.47 86.54 0.47 1.99 16 27 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 28 H -0.04 -2.20 8.12 -2.39 -0.02 -2.22 16 29 H 0.00 -0.01 7.97 -2.39 -0.02 -0.03 16 30 H 0.02 0.64 8.14 -2.39 -0.02 0.63 16 31 H 0.07 2.65 7.99 -2.39 -0.02 2.63 16 32 H 0.08 2.62 7.06 -2.39 -0.02 2.60 16 33 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.15 0.59 7.67 -2.39 -0.02 0.57 16 35 H 0.12 0.84 7.98 -2.39 -0.02 0.82 16 36 H 0.15 -0.05 8.14 -2.38 -0.02 -0.07 16 37 H 0.16 -0.24 7.74 -2.39 -0.02 -0.26 16 38 H 0.41 4.97 8.96 -92.71 -0.83 4.14 16 39 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.13 1.52 6.02 -2.39 -0.01 1.50 16 41 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.09 2.96 6.67 -2.39 -0.02 2.94 16 Total: -1.00 -81.06 343.67 -0.41 -81.46 By element: Atomic # 1 Polarization: 3.95 SS G_CDS: 0.22 Total: 4.17 kcal Atomic # 6 Polarization: 17.30 SS G_CDS: 5.53 Total: 22.83 kcal Atomic # 7 Polarization: -101.73 SS G_CDS: -8.67 Total: -110.40 kcal Atomic # 8 Polarization: -42.71 SS G_CDS: 0.48 Total: -42.23 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.15 kcal Total: -81.06 -0.41 -81.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333984154.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.529 kcal (2) G-P(sol) polarization free energy of solvation -81.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.02 seconds