Wall clock time and date at job start Fri Apr 10 2020 18:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86807 * 119.99889 * 2 1 4 4 H 1.48491 * 109.47165 * 240.00217 * 3 2 1 5 5 H 1.48504 * 109.46873 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46958 * 119.99798 * 3 2 1 7 7 C 1.38808 * 120.00533 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00560 * 160.28195 * 7 2 1 9 9 N 1.36938 * 119.99711 * 340.28734 * 7 2 1 10 10 C 1.46500 * 119.99992 * 320.53345 * 9 7 2 11 11 C 1.52995 * 109.46995 * 269.99813 * 10 9 7 12 12 N 1.46500 * 109.46995 * 179.97438 * 11 10 9 13 13 C 1.34779 * 119.99644 * 179.72405 * 12 11 10 14 14 O 1.21274 * 120.00467 * 0.27932 * 13 12 11 15 15 C 1.50703 * 119.99557 * 180.27739 * 13 12 11 16 16 C 1.53001 * 109.46814 * 180.02562 * 15 13 12 17 17 H 1.09006 * 110.54248 * 52.15336 * 16 15 13 18 18 C 1.54238 * 110.60348 * 174.99947 * 16 15 13 19 19 C 1.51316 * 103.55391 * 118.51998 * 18 16 15 20 20 O 1.21218 * 125.39484 * 180.02562 * 19 18 16 21 21 N 1.33873 * 109.20422 * 359.97438 * 19 18 16 22 22 C 1.33873 * 114.48173 * 0.02562 * 21 19 18 23 23 O 1.21227 * 125.39597 * 180.02562 * 22 21 19 24 24 C 1.46504 * 120.00165 * 140.52957 * 9 7 2 25 25 C 1.53008 * 117.49633 * 3.29270 * 24 9 7 26 26 C 1.52999 * 59.99867 * 252.50903 * 25 24 9 27 27 H 0.97005 * 120.00396 * 355.01019 * 1 2 3 28 28 H 1.09004 * 109.47231 * 149.99747 * 10 9 7 29 29 H 1.09001 * 109.47202 * 30.00008 * 10 9 7 30 30 H 1.09004 * 109.47184 * 59.99906 * 11 10 9 31 31 H 1.09001 * 109.47305 * 300.00132 * 11 10 9 32 32 H 0.96993 * 120.00230 * 0.02562 * 12 11 10 33 33 H 1.09000 * 109.47200 * 299.99997 * 15 13 12 34 34 H 1.08998 * 109.47239 * 60.00324 * 15 13 12 35 35 H 1.09008 * 110.60003 * 237.03176 * 18 16 15 36 36 H 1.08993 * 110.60833 * 359.97438 * 18 16 15 37 37 H 0.97006 * 122.75598 * 179.97438 * 21 19 18 38 38 H 1.08995 * 115.54753 * 148.99489 * 24 9 7 39 39 H 1.09003 * 117.49802 * 359.97438 * 25 24 9 40 40 H 1.08999 * 117.49780 * 145.01777 * 25 24 9 41 41 H 1.08999 * 117.50101 * 252.51017 * 26 25 24 42 42 H 1.09003 * 117.50194 * 107.48954 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2850 2.7465 0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0427 -1.2293 -0.3161 9 7 1.3858 -2.3534 0.3990 10 6 0.4640 -2.3296 1.5373 11 6 1.2391 -2.6058 2.8271 12 7 0.3173 -2.5814 3.9655 13 6 0.7794 -2.8061 5.2116 14 8 1.9589 -3.0234 5.3910 15 6 -0.1699 -2.7872 6.3819 16 6 0.6045 -3.0682 7.6712 17 1 1.4595 -2.3976 7.7577 18 6 -0.3186 -2.9321 8.8994 19 6 -0.2976 -4.3148 9.5137 20 8 -0.8999 -4.6491 10.5112 21 7 0.4905 -5.1106 8.7804 22 6 1.0495 -4.5136 7.7205 23 8 1.7937 -5.0467 6.9258 24 6 1.6396 -3.6090 -0.3120 25 6 2.6701 -3.5848 -1.4427 26 6 1.1798 -3.7016 -1.7684 27 1 -0.4851 0.8369 0.0731 28 1 -0.3005 -3.0948 1.4019 29 1 -0.0098 -1.3500 1.6008 30 1 2.0035 -1.8406 2.9626 31 1 1.7129 -3.5854 2.7637 32 1 -0.6261 -2.4080 3.8221 33 1 -0.6441 -1.8080 6.4494 34 1 -0.9339 -3.5520 6.2425 35 1 0.0789 -2.1958 9.5981 36 1 -1.3292 -2.6637 8.5919 37 1 0.6444 -6.0429 8.9994 38 1 1.5778 -4.5130 0.2938 39 1 3.1590 -2.6345 -1.6578 40 1 3.2866 -4.4730 -1.5809 41 1 0.8157 -4.6666 -2.1208 42 1 0.6883 -2.8283 -2.1975 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493453639.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:02:54 Heat of formation + Delta-G solvation = -82.136128 kcal Electronic energy + Delta-G solvation = -25279.307212 eV Core-core repulsion = 21453.055548 eV Total energy + Delta-G solvation = -3826.251664 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.152 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.82414 -40.51850 -39.55412 -38.79542 -36.95923 -36.23957 -34.91245 -34.50559 -32.68579 -30.29602 -28.74863 -26.49882 -25.77705 -23.49721 -22.91388 -22.65883 -22.04453 -21.57260 -20.94615 -18.95934 -18.46415 -17.93214 -17.51954 -17.24846 -17.16290 -16.78452 -16.54879 -16.15374 -15.90795 -15.56902 -15.26747 -15.02389 -14.73108 -14.46100 -14.32104 -13.90755 -13.72513 -13.56079 -13.20365 -12.98086 -12.86625 -12.62077 -12.47861 -12.17812 -12.11676 -11.92584 -11.68353 -11.64264 -11.38102 -11.35211 -11.02116 -10.95049 -10.71170 -10.49730 -9.90417 -8.51861 -7.81786 -5.52785 0.50442 1.45725 1.48047 1.54622 1.74920 1.81700 1.84876 2.28287 2.51615 3.14830 3.18426 3.25257 3.39625 3.42658 3.62814 3.73580 4.06815 4.29132 4.34441 4.40963 4.44497 4.53661 4.58176 4.64039 4.70236 4.84360 4.86695 4.93838 4.94885 5.04206 5.07481 5.26427 5.34663 5.54833 5.55564 5.66118 5.68428 5.76312 6.32696 6.45899 6.74893 6.89322 7.14211 7.46390 7.80006 8.32892 9.08961 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.019179 B = 0.002967 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.582751 B = 9435.354039 C =10270.796531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C -0.023 4.023 3 Si 0.950 3.050 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.282 1.282 7 C -0.269 4.269 8 H 0.052 0.948 9 N -0.566 5.566 10 C 0.150 3.850 11 C 0.123 3.877 12 N -0.717 5.717 13 C 0.490 3.510 14 O -0.572 6.572 15 C -0.118 4.118 16 C -0.106 4.106 17 H 0.131 0.869 18 C -0.135 4.135 19 C 0.534 3.466 20 O -0.523 6.523 21 N -0.680 5.680 22 C 0.523 3.477 23 O -0.501 6.501 24 C 0.098 3.902 25 C -0.185 4.185 26 C -0.210 4.210 27 H 0.254 0.746 28 H 0.044 0.956 29 H 0.078 0.922 30 H 0.030 0.970 31 H 0.036 0.964 32 H 0.413 0.587 33 H 0.157 0.843 34 H 0.121 0.879 35 H 0.152 0.848 36 H 0.159 0.841 37 H 0.415 0.585 38 H 0.107 0.893 39 H 0.074 0.926 40 H 0.108 0.892 41 H 0.102 0.898 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.872 -4.963 16.450 18.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.222 4.222 3 Si 0.778 3.222 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.209 1.209 7 C -0.399 4.399 8 H 0.070 0.930 9 N -0.284 5.284 10 C 0.024 3.976 11 C -0.004 4.004 12 N -0.370 5.370 13 C 0.277 3.723 14 O -0.451 6.451 15 C -0.158 4.158 16 C -0.128 4.128 17 H 0.149 0.851 18 C -0.174 4.174 19 C 0.325 3.675 20 O -0.398 6.398 21 N -0.345 5.345 22 C 0.311 3.689 23 O -0.372 6.372 24 C -0.009 4.009 25 C -0.223 4.223 26 C -0.250 4.250 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.096 0.904 30 H 0.049 0.951 31 H 0.054 0.946 32 H 0.249 0.751 33 H 0.174 0.826 34 H 0.140 0.860 35 H 0.170 0.830 36 H 0.177 0.823 37 H 0.254 0.746 38 H 0.125 0.875 39 H 0.093 0.907 40 H 0.126 0.874 41 H 0.120 0.880 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.098 -5.244 16.546 18.091 hybrid contribution 0.500 0.284 -0.429 0.718 sum -4.598 -4.960 16.117 17.479 Atomic orbital electron populations 1.70129 1.06291 1.26708 1.51741 1.25776 0.95730 1.01060 0.99644 0.85640 0.78175 0.80256 0.78138 1.20546 1.21179 1.20865 1.19091 0.93151 0.86282 1.41347 0.92994 1.43385 1.51277 1.03699 1.30061 1.20880 0.90931 1.01991 0.83808 1.21688 0.93095 0.98820 0.86750 1.45910 1.12691 1.72208 1.06218 1.21453 0.89728 0.75948 0.85120 1.90763 1.19549 1.49191 1.85611 1.21728 0.97194 1.08672 0.88178 1.21883 1.01460 0.93122 0.96292 0.85128 1.22701 1.04836 0.93810 0.96031 1.21292 0.75307 0.89481 0.81440 1.90813 1.43931 1.80266 1.24797 1.44910 1.45329 1.16645 1.27651 1.21270 0.77969 0.90907 0.78778 1.90892 1.33388 1.71599 1.41332 1.21523 1.02202 0.90087 0.87137 1.23028 0.92216 1.02219 1.04854 1.23235 0.97014 1.01124 1.03649 0.93624 0.93778 0.90450 0.95111 0.94586 0.75092 0.82555 0.86044 0.83030 0.82350 0.74556 0.87527 0.90735 0.87393 0.87986 0.92346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.27 11.50 21.65 0.25 -49.03 16 2 C -0.02 -1.24 4.98 84.86 0.42 -0.82 16 3 Si 0.95 43.22 29.60 68.60 2.03 45.25 16 4 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 5 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 6 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 7 C -0.27 -14.27 8.47 84.03 0.71 -13.56 16 8 H 0.05 2.83 6.74 -2.91 -0.02 2.81 16 9 N -0.57 -27.27 2.75 -678.03 -1.86 -29.14 16 10 C 0.15 6.46 5.45 86.38 0.47 6.93 16 11 C 0.12 4.87 6.00 86.38 0.52 5.39 16 12 N -0.72 -20.88 5.56 -463.06 -2.57 -23.45 16 13 C 0.49 13.59 7.52 87.66 0.66 14.25 16 14 O -0.57 -21.94 13.96 17.25 0.24 -21.70 16 15 C -0.12 -1.52 5.01 29.85 0.15 -1.37 16 16 C -0.11 -1.38 2.69 -10.93 -0.03 -1.41 16 17 H 0.13 1.90 7.89 -2.38 -0.02 1.88 16 18 C -0.13 -0.73 6.67 30.46 0.20 -0.52 16 19 C 0.53 7.18 8.55 87.99 0.75 7.93 16 20 O -0.52 -10.73 18.02 -2.84 -0.05 -10.78 16 21 N -0.68 -10.34 5.48 -427.81 -2.34 -12.69 16 22 C 0.52 10.84 7.72 87.99 0.68 11.52 16 23 O -0.50 -16.25 15.90 17.40 0.28 -15.97 16 24 C 0.10 4.11 6.56 44.99 0.30 4.41 16 25 C -0.19 -7.16 9.80 30.60 0.30 -6.86 16 26 C -0.21 -8.27 10.36 30.59 0.32 -7.96 16 27 H 0.25 13.34 8.32 -92.70 -0.77 12.57 16 28 H 0.04 1.75 8.07 -2.38 -0.02 1.73 16 29 H 0.08 3.70 5.59 -2.39 -0.01 3.69 16 30 H 0.03 1.41 8.14 -2.38 -0.02 1.39 16 31 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.41 9.19 8.47 -92.71 -0.79 8.40 16 33 H 0.16 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.12 1.05 8.12 -2.39 -0.02 1.03 16 35 H 0.15 0.16 8.14 -2.38 -0.02 0.14 16 36 H 0.16 -0.08 7.74 -2.39 -0.02 -0.10 16 37 H 0.42 5.69 8.96 -92.70 -0.83 4.86 16 38 H 0.11 3.98 8.14 -2.39 -0.02 3.96 16 39 H 0.07 3.24 6.46 -2.39 -0.02 3.22 16 40 H 0.11 3.43 8.14 -2.39 -0.02 3.41 16 41 H 0.10 3.34 8.14 -2.39 -0.02 3.32 16 42 H 0.06 2.71 8.14 -2.39 -0.02 2.69 16 Total: -1.00 -79.31 355.37 0.87 -78.44 By element: Atomic # 1 Polarization: 21.69 SS G_CDS: -0.55 Total: 21.15 kcal Atomic # 6 Polarization: 12.48 SS G_CDS: 5.45 Total: 17.93 kcal Atomic # 7 Polarization: -107.78 SS G_CDS: -6.53 Total: -114.31 kcal Atomic # 8 Polarization: -48.92 SS G_CDS: 0.47 Total: -48.45 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Total: -79.31 0.87 -78.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493453639.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.699 kcal (2) G-P(sol) polarization free energy of solvation -79.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds