Wall clock time and date at job start Fri Apr 10 2020 18:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34175 * 125.44018 * 2 1 4 4 C 1.47018 * 105.95549 * 179.97438 * 3 2 1 5 5 C 1.47381 * 127.19027 * 179.97438 * 4 3 2 6 6 O 1.21611 * 120.00072 * 170.22950 * 5 4 3 7 7 N 1.34779 * 120.00314 * 350.22532 * 5 4 3 8 8 C 1.46503 * 119.99581 * 0.19744 * 7 5 4 9 9 C 1.46494 * 120.00463 * 180.19237 * 7 5 4 10 10 C 1.53000 * 109.46935 * 90.00090 * 9 7 5 11 11 N 1.46904 * 109.47058 * 180.02562 * 10 9 7 12 12 C 1.46904 * 110.99984 * 180.02562 * 11 10 9 13 13 C 1.50699 * 109.47095 * 179.97438 * 12 11 10 14 14 O 1.21289 * 120.00249 * 359.97438 * 13 12 11 15 15 N 1.34780 * 119.99870 * 180.02562 * 13 12 11 16 16 C 1.37092 * 119.99734 * 179.97438 * 15 13 12 17 17 H 1.07997 * 120.00366 * 0.02562 * 16 15 13 18 18 C 1.38957 * 119.99866 * 179.97438 * 16 15 13 19 19 N 1.31416 * 119.99883 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00045 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47169 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47334 * 119.99935 * 20 18 16 23 23 H 1.48501 * 109.46910 * 240.00076 * 20 18 16 24 24 C 1.36412 * 105.61689 * 0.02562 * 4 3 2 25 25 O 1.33645 * 108.39589 * 359.97438 * 24 4 3 26 26 H 1.09000 * 109.47156 * 89.99550 * 1 2 3 27 27 H 1.09004 * 109.46654 * 209.99412 * 1 2 3 28 28 H 1.08996 * 109.47026 * 329.99094 * 1 2 3 29 29 H 1.07998 * 127.02293 * 359.70753 * 3 2 1 30 30 H 1.08999 * 109.47369 * 83.98178 * 8 7 5 31 31 H 1.09003 * 109.46844 * 203.98464 * 8 7 5 32 32 H 1.09003 * 109.47065 * 323.98083 * 8 7 5 33 33 H 1.08998 * 109.47561 * 209.99844 * 9 7 5 34 34 H 1.09005 * 109.47182 * 330.00525 * 9 7 5 35 35 H 1.09001 * 109.47296 * 300.00304 * 10 9 7 36 36 H 1.08997 * 109.47643 * 60.00118 * 10 9 7 37 37 H 1.00892 * 111.00482 * 56.04836 * 11 10 9 38 38 H 1.09005 * 109.47121 * 299.99936 * 12 11 10 39 39 H 1.09000 * 109.47246 * 59.99579 * 12 11 10 40 40 H 0.97003 * 120.00065 * 359.97438 * 15 13 12 41 41 H 0.96995 * 119.99844 * 180.02562 * 19 18 16 42 42 H 1.08002 * 125.79691 * 180.02562 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2850 1.0931 0.0000 4 6 3.6710 0.6028 0.0006 5 6 4.9024 1.4125 0.0003 6 8 5.9807 0.8794 0.1797 7 7 4.8337 2.7437 -0.1987 8 6 3.5343 3.3864 -0.4105 9 6 6.0581 3.5479 -0.2032 10 6 6.6144 3.6220 -1.6266 11 7 7.8426 4.4280 -1.6310 12 6 8.4059 4.5217 -2.9845 13 6 9.6614 5.3545 -2.9495 14 8 10.0486 5.8241 -1.9005 15 7 10.3534 5.5782 -4.0843 16 6 11.4953 6.3362 -4.0525 17 1 11.8405 6.7537 -3.1182 18 6 12.2091 6.5665 -5.2222 19 7 11.7893 6.0581 -6.3590 20 14 13.7653 7.5987 -5.1789 21 1 14.0204 8.0516 -3.7879 22 1 14.9129 6.7843 -5.6531 23 1 13.5995 8.7815 -6.0614 24 6 3.5790 -0.7583 0.0004 25 8 2.2852 -1.0935 0.0002 26 1 -0.3633 0.0001 -1.0277 27 1 -0.3633 -0.8901 0.5138 28 1 -0.3633 0.8899 0.5140 29 1 1.9596 2.1229 -0.0044 30 1 3.0712 3.5962 0.5536 31 1 3.6752 4.3193 -0.9566 32 1 2.8899 2.7221 -0.9863 33 1 5.8336 4.5537 0.1519 34 1 6.7975 3.0877 0.4523 35 1 6.8389 2.6162 -1.9818 36 1 5.8751 4.0821 -2.2822 37 1 8.5204 4.0578 -0.9819 38 1 8.6424 3.5223 -3.3497 39 1 7.6789 4.9887 -3.6491 40 1 10.0435 5.2030 -4.9234 41 1 12.2877 6.2185 -7.1755 42 1 4.4103 -1.4476 0.0011 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493528861.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:03:09 Heat of formation + Delta-G solvation = -36.780357 kcal Electronic energy + Delta-G solvation = -24253.927227 eV Core-core repulsion = 20429.642336 eV Total energy + Delta-G solvation = -3824.284891 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.152 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -42.98383 -39.88019 -38.25011 -36.38642 -35.11912 -33.86353 -33.48311 -32.37393 -31.20696 -29.75503 -27.62560 -26.77735 -26.17801 -24.36215 -23.12153 -22.10080 -21.25134 -19.27748 -19.02892 -17.87476 -17.67786 -16.92185 -16.71824 -16.33219 -16.15727 -15.50204 -15.27154 -14.64928 -14.47653 -14.15080 -13.83225 -13.75082 -13.65203 -13.55455 -13.51234 -13.35287 -13.20261 -12.99677 -12.30613 -12.26909 -12.04991 -11.70285 -11.50249 -11.47347 -11.10453 -10.95580 -10.32219 -10.23608 -10.19981 -10.09121 -9.49560 -9.09124 -8.82646 -8.42560 -8.05129 -7.93365 -6.39313 -3.79971 1.05610 1.60523 2.41982 2.72548 3.09036 3.18411 3.28712 3.36397 3.93843 4.04470 4.15229 4.32217 4.48266 4.54376 4.73722 4.82610 4.91234 4.95229 4.99119 5.03913 5.16815 5.22562 5.24576 5.28048 5.31624 5.40749 5.53126 5.63982 5.77901 5.86785 5.91256 5.92653 6.02007 6.24281 6.33059 6.62815 7.13163 7.20726 7.57943 7.66983 7.95852 8.09198 8.63995 9.20478 9.57061 10.08552 10.78603 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.037561 B = 0.001927 C = 0.001919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.273455 B =14525.666579 C =14586.096676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.013 4.013 3 C -0.205 4.205 4 C -0.237 4.237 5 C 0.587 3.413 6 O -0.540 6.540 7 N -0.605 5.605 8 C 0.061 3.939 9 C 0.118 3.882 10 C 0.046 3.954 11 N -0.667 5.667 12 C 0.052 3.948 13 C 0.442 3.558 14 O -0.582 6.582 15 N -0.564 5.564 16 C -0.298 4.298 17 H 0.104 0.896 18 C 0.021 3.979 19 N -0.902 5.902 20 Si 0.930 3.070 21 H -0.268 1.268 22 H -0.282 1.282 23 H -0.282 1.282 24 C 0.050 3.950 25 O -0.175 6.175 26 H 0.083 0.917 27 H 0.077 0.923 28 H 0.090 0.910 29 H 0.174 0.826 30 H 0.059 0.941 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.031 0.969 36 H 0.070 0.930 37 H 0.351 0.649 38 H 0.044 0.956 39 H 0.086 0.914 40 H 0.392 0.608 41 H 0.271 0.729 42 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.710 -12.092 9.824 30.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.062 4.062 3 C -0.224 4.224 4 C -0.242 4.242 5 C 0.376 3.624 6 O -0.418 6.418 7 N -0.338 5.338 8 C -0.082 4.082 9 C -0.005 4.005 10 C -0.085 4.085 11 N -0.300 5.300 12 C -0.080 4.080 13 C 0.227 3.773 14 O -0.467 6.467 15 N -0.201 5.201 16 C -0.428 4.428 17 H 0.122 0.878 18 C -0.181 4.181 19 N -0.544 5.544 20 Si 0.757 3.243 21 H -0.192 1.192 22 H -0.208 1.208 23 H -0.208 1.208 24 C -0.021 4.021 25 O -0.071 6.071 26 H 0.102 0.898 27 H 0.096 0.904 28 H 0.109 0.891 29 H 0.191 0.809 30 H 0.078 0.922 31 H 0.095 0.905 32 H 0.105 0.895 33 H 0.108 0.892 34 H 0.104 0.896 35 H 0.049 0.951 36 H 0.089 0.911 37 H 0.171 0.829 38 H 0.062 0.938 39 H 0.104 0.896 40 H 0.225 0.775 41 H 0.080 0.920 42 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -25.250 -11.691 10.396 29.704 hybrid contribution 1.044 -0.378 -0.882 1.418 sum -24.206 -12.069 9.514 28.673 Atomic orbital electron populations 1.20355 0.84696 1.04326 1.03814 1.22438 0.94236 0.83886 1.05593 1.23348 0.90707 1.00188 1.08118 1.21393 0.93843 0.94111 1.14809 1.17315 0.87301 0.81523 0.76254 1.90819 1.29504 1.71458 1.50038 1.47553 1.08067 1.06790 1.71390 1.22496 0.84966 0.99200 1.01498 1.21457 0.85957 0.95637 0.97438 1.22259 0.93453 0.95816 0.96942 1.60016 1.07410 1.54559 1.07989 1.21658 0.96673 0.98788 0.90930 1.19797 0.86279 0.86148 0.85054 1.90520 1.70673 1.54839 1.30623 1.41868 1.23455 1.46406 1.08393 1.19767 1.00275 1.26678 0.96063 0.87832 1.25274 0.99782 0.98274 0.94726 1.69625 1.40435 1.45331 0.98987 0.85787 0.80807 0.79123 0.78549 1.19207 1.20787 1.20766 1.24384 0.83643 0.95496 0.98545 1.83764 1.16613 1.35612 1.71067 0.89833 0.90358 0.89100 0.80931 0.92226 0.90496 0.89490 0.89153 0.89580 0.95102 0.91120 0.82945 0.93805 0.89626 0.77457 0.91951 0.76557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.24 10.40 36.00 0.37 0.13 16 2 C -0.01 -0.09 7.28 -35.74 -0.26 -0.35 16 3 C -0.20 -1.53 8.76 -37.46 -0.33 -1.86 16 4 C -0.24 -2.44 6.08 -103.28 -0.63 -3.06 16 5 C 0.59 7.51 7.67 -12.54 -0.10 7.42 16 6 O -0.54 -8.81 16.51 5.27 0.09 -8.73 16 7 N -0.61 -6.59 2.87 -182.86 -0.53 -7.11 16 8 C 0.06 0.42 8.74 59.85 0.52 0.95 16 9 C 0.12 1.43 5.64 -4.05 -0.02 1.41 16 10 C 0.05 0.63 6.01 -3.82 -0.02 0.61 16 11 N -0.67 -11.42 6.12 -115.05 -0.70 -12.12 16 12 C 0.05 0.97 6.17 -4.97 -0.03 0.94 16 13 C 0.44 10.78 7.82 -10.98 -0.09 10.70 16 14 O -0.58 -16.24 15.78 5.55 0.09 -16.16 16 15 N -0.56 -14.69 5.29 -10.96 -0.06 -14.75 16 16 C -0.30 -8.49 9.68 -14.93 -0.14 -8.64 16 17 H 0.10 3.09 7.16 -52.49 -0.38 2.72 16 18 C 0.02 0.57 5.50 -17.46 -0.10 0.47 16 19 N -0.90 -24.95 13.05 55.50 0.72 -24.23 16 20 Si 0.93 21.38 29.55 -169.99 -5.02 16.35 16 21 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 22 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 23 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 24 C 0.05 0.45 11.92 30.07 0.36 0.81 16 25 O -0.17 -1.50 10.52 7.66 0.08 -1.42 16 26 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 27 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 28 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 29 H 0.17 0.86 4.89 -52.49 -0.26 0.60 16 30 H 0.06 0.33 7.69 -51.93 -0.40 -0.07 16 31 H 0.08 0.47 8.03 -51.93 -0.42 0.06 16 32 H 0.09 0.52 4.78 -51.93 -0.25 0.27 16 33 H 0.09 0.99 8.07 -51.93 -0.42 0.58 16 34 H 0.09 1.18 7.42 -51.93 -0.39 0.80 16 35 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.35 6.30 8.43 -39.30 -0.33 5.97 16 38 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.09 1.46 8.14 -51.93 -0.42 1.03 16 40 H 0.39 9.75 7.90 -40.82 -0.32 9.43 16 41 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 42 H 0.22 1.52 8.06 -52.49 -0.42 1.10 16 LS Contribution 360.42 15.07 5.43 5.43 Total: -1.00 -35.53 360.42 -6.03 -41.56 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: -5.67 Total: 11.64 kcal Atomic # 6 Polarization: 9.98 SS G_CDS: -0.46 Total: 9.52 kcal Atomic # 7 Polarization: -57.65 SS G_CDS: -0.56 Total: -58.22 kcal Atomic # 8 Polarization: -26.55 SS G_CDS: 0.26 Total: -26.30 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -35.53 -6.03 -41.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493528861.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.783 kcal (2) G-P(sol) polarization free energy of solvation -35.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds