Wall clock time and date at job start Fri Apr 10 2020 18:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34175 * 125.44018 * 2 1 4 4 C 1.47018 * 105.95549 * 179.97438 * 3 2 1 5 5 C 1.47381 * 127.19027 * 179.97438 * 4 3 2 6 6 O 1.21611 * 120.00072 * 170.22950 * 5 4 3 7 7 N 1.34779 * 120.00314 * 350.22532 * 5 4 3 8 8 C 1.46503 * 119.99581 * 0.19744 * 7 5 4 9 9 C 1.46494 * 120.00463 * 180.19237 * 7 5 4 10 10 C 1.53000 * 109.46935 * 90.00090 * 9 7 5 11 11 N 1.46904 * 109.47058 * 180.02562 * 10 9 7 12 12 C 1.46904 * 110.99984 * 180.02562 * 11 10 9 13 13 C 1.50699 * 109.47095 * 179.97438 * 12 11 10 14 14 O 1.21289 * 120.00249 * 359.97438 * 13 12 11 15 15 N 1.34780 * 119.99870 * 180.02562 * 13 12 11 16 16 C 1.37092 * 119.99734 * 179.97438 * 15 13 12 17 17 H 1.07997 * 120.00366 * 0.02562 * 16 15 13 18 18 C 1.38957 * 119.99866 * 179.97438 * 16 15 13 19 19 N 1.31416 * 119.99883 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00045 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47169 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47334 * 119.99935 * 20 18 16 23 23 H 1.48501 * 109.46910 * 240.00076 * 20 18 16 24 24 C 1.36412 * 105.61689 * 0.02562 * 4 3 2 25 25 O 1.33645 * 108.39589 * 359.97438 * 24 4 3 26 26 H 1.09000 * 109.47156 * 89.99550 * 1 2 3 27 27 H 1.09004 * 109.46654 * 209.99412 * 1 2 3 28 28 H 1.08996 * 109.47026 * 329.99094 * 1 2 3 29 29 H 1.07998 * 127.02293 * 359.70753 * 3 2 1 30 30 H 1.08999 * 109.47369 * 83.98178 * 8 7 5 31 31 H 1.09003 * 109.46844 * 203.98464 * 8 7 5 32 32 H 1.09003 * 109.47065 * 323.98083 * 8 7 5 33 33 H 1.08998 * 109.47561 * 209.99844 * 9 7 5 34 34 H 1.09005 * 109.47182 * 330.00525 * 9 7 5 35 35 H 1.09001 * 109.47296 * 300.00304 * 10 9 7 36 36 H 1.08997 * 109.47643 * 60.00118 * 10 9 7 37 37 H 1.00892 * 111.00482 * 56.04836 * 11 10 9 38 38 H 1.09005 * 109.47121 * 299.99936 * 12 11 10 39 39 H 1.09000 * 109.47246 * 59.99579 * 12 11 10 40 40 H 0.97003 * 120.00065 * 359.97438 * 15 13 12 41 41 H 0.96995 * 119.99844 * 180.02562 * 19 18 16 42 42 H 1.08002 * 125.79691 * 180.02562 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2850 1.0931 0.0000 4 6 3.6710 0.6028 0.0006 5 6 4.9024 1.4125 0.0003 6 8 5.9807 0.8794 0.1797 7 7 4.8337 2.7437 -0.1987 8 6 3.5343 3.3864 -0.4105 9 6 6.0581 3.5479 -0.2032 10 6 6.6144 3.6220 -1.6266 11 7 7.8426 4.4280 -1.6310 12 6 8.4059 4.5217 -2.9845 13 6 9.6614 5.3545 -2.9495 14 8 10.0486 5.8241 -1.9005 15 7 10.3534 5.5782 -4.0843 16 6 11.4953 6.3362 -4.0525 17 1 11.8405 6.7537 -3.1182 18 6 12.2091 6.5665 -5.2222 19 7 11.7893 6.0581 -6.3590 20 14 13.7653 7.5987 -5.1789 21 1 14.0204 8.0516 -3.7879 22 1 14.9129 6.7843 -5.6531 23 1 13.5995 8.7815 -6.0614 24 6 3.5790 -0.7583 0.0004 25 8 2.2852 -1.0935 0.0002 26 1 -0.3633 0.0001 -1.0277 27 1 -0.3633 -0.8901 0.5138 28 1 -0.3633 0.8899 0.5140 29 1 1.9596 2.1229 -0.0044 30 1 3.0712 3.5962 0.5536 31 1 3.6752 4.3193 -0.9566 32 1 2.8899 2.7221 -0.9863 33 1 5.8336 4.5537 0.1519 34 1 6.7975 3.0877 0.4523 35 1 6.8389 2.6162 -1.9818 36 1 5.8751 4.0821 -2.2822 37 1 8.5204 4.0578 -0.9819 38 1 8.6424 3.5223 -3.3497 39 1 7.6789 4.9887 -3.6491 40 1 10.0435 5.2030 -4.9234 41 1 12.2877 6.2185 -7.1755 42 1 4.4103 -1.4476 0.0011 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493528861.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:03:07 Heat of formation + Delta-G solvation = -63.914913 kcal Electronic energy + Delta-G solvation = -24255.103870 eV Core-core repulsion = 20429.642336 eV Total energy + Delta-G solvation = -3825.461533 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.152 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.60167 -40.82188 -40.16197 -37.55074 -36.36273 -35.79138 -34.19460 -33.29502 -32.90558 -30.91426 -28.38595 -27.79800 -27.17940 -25.98699 -24.26052 -22.96002 -22.04653 -21.11028 -19.95680 -19.77789 -18.43136 -17.94601 -17.66165 -17.34391 -17.16896 -17.05439 -16.51307 -16.20114 -15.90650 -15.43718 -15.20463 -14.86655 -14.79402 -14.25992 -14.12793 -14.08544 -13.92414 -13.81192 -13.71120 -13.55016 -13.36200 -12.97067 -12.78455 -12.74648 -12.42082 -12.33496 -12.11599 -12.06381 -11.53170 -11.18822 -10.79046 -10.41725 -10.03803 -9.87253 -9.48395 -9.45063 -8.48331 -5.97404 0.31408 1.03937 1.36089 1.41420 1.56066 1.76106 1.96892 2.01764 2.23199 2.29011 2.94567 3.18430 3.43157 3.53229 3.70734 3.95774 3.98480 4.08518 4.24382 4.29108 4.35408 4.44220 4.46067 4.47272 4.53928 4.64309 4.72863 4.78587 4.83220 4.88346 4.90383 4.94257 5.12325 5.38341 5.40151 5.46104 5.80469 6.02351 6.03657 6.24389 6.30299 6.57519 7.03700 7.10362 7.53055 8.08121 8.69372 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.037561 B = 0.001927 C = 0.001919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.273455 B =14525.666579 C =14586.096676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.015 4.015 3 C -0.207 4.207 4 C -0.262 4.262 5 C 0.579 3.421 6 O -0.589 6.589 7 N -0.602 5.602 8 C 0.054 3.946 9 C 0.123 3.877 10 C 0.056 3.944 11 N -0.675 5.675 12 C 0.066 3.934 13 C 0.438 3.562 14 O -0.622 6.622 15 N -0.572 5.572 16 C -0.335 4.335 17 H 0.080 0.920 18 C -0.014 4.014 19 N -0.920 5.920 20 Si 0.996 3.004 21 H -0.273 1.273 22 H -0.271 1.271 23 H -0.269 1.269 24 C 0.045 3.955 25 O -0.182 6.182 26 H 0.096 0.904 27 H 0.083 0.917 28 H 0.111 0.889 29 H 0.199 0.801 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.099 0.901 33 H 0.106 0.894 34 H 0.064 0.936 35 H 0.018 0.982 36 H 0.089 0.911 37 H 0.343 0.657 38 H 0.060 0.940 39 H 0.109 0.891 40 H 0.397 0.603 41 H 0.278 0.722 42 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.897 -11.653 9.274 31.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.063 4.063 3 C -0.225 4.225 4 C -0.266 4.266 5 C 0.370 3.630 6 O -0.472 6.472 7 N -0.333 5.333 8 C -0.087 4.087 9 C 0.000 4.000 10 C -0.074 4.074 11 N -0.307 5.307 12 C -0.067 4.067 13 C 0.225 3.775 14 O -0.508 6.508 15 N -0.209 5.209 16 C -0.464 4.464 17 H 0.098 0.902 18 C -0.214 4.214 19 N -0.561 5.561 20 Si 0.819 3.181 21 H -0.198 1.198 22 H -0.196 1.196 23 H -0.194 1.194 24 C -0.026 4.026 25 O -0.078 6.078 26 H 0.115 0.885 27 H 0.102 0.898 28 H 0.130 0.870 29 H 0.216 0.784 30 H 0.097 0.903 31 H 0.108 0.892 32 H 0.117 0.883 33 H 0.125 0.875 34 H 0.082 0.918 35 H 0.036 0.964 36 H 0.107 0.893 37 H 0.162 0.838 38 H 0.078 0.922 39 H 0.127 0.873 40 H 0.231 0.769 41 H 0.088 0.912 42 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -27.505 -11.247 9.818 31.295 hybrid contribution 1.635 -0.543 -0.697 1.858 sum -25.870 -11.790 9.121 29.857 Atomic orbital electron populations 1.20565 0.81907 1.05636 1.05024 1.23207 0.95739 0.83222 1.04132 1.23595 0.89070 1.01618 1.08224 1.21399 0.94182 0.94515 1.16506 1.17754 0.87496 0.82180 0.75557 1.90782 1.31371 1.72498 1.52513 1.47642 1.09016 1.06275 1.70375 1.22792 0.83194 0.99671 1.03077 1.21313 0.86340 0.96345 0.96037 1.22254 0.92253 0.94648 0.98281 1.60044 1.08125 1.55591 1.06931 1.21533 0.94275 0.98469 0.92387 1.20788 0.87305 0.85500 0.83880 1.90489 1.72052 1.56381 1.31912 1.41929 1.23326 1.46562 1.09117 1.19731 1.02167 1.28723 0.95821 0.90235 1.26086 1.02421 0.98864 0.93999 1.69682 1.41466 1.45533 0.99440 0.84832 0.77085 0.77865 0.78309 1.19782 1.19606 1.19436 1.24630 0.84264 0.95594 0.98092 1.83787 1.16454 1.36539 1.70974 0.88543 0.89837 0.87010 0.78447 0.90259 0.89217 0.88252 0.87546 0.91773 0.96397 0.89267 0.83834 0.92203 0.87257 0.76949 0.91245 0.75747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.26 10.40 71.23 0.74 0.48 16 2 C -0.01 -0.17 7.28 24.76 0.18 0.01 16 3 C -0.21 -2.64 8.76 23.65 0.21 -2.44 16 4 C -0.26 -5.24 6.08 -18.99 -0.12 -5.35 16 5 C 0.58 14.93 7.67 86.65 0.66 15.59 16 6 O -0.59 -20.15 16.51 -4.07 -0.07 -20.22 16 7 N -0.60 -12.48 2.87 -850.71 -2.44 -14.93 16 8 C 0.05 0.60 8.74 127.77 1.12 1.71 16 9 C 0.12 2.93 5.64 86.38 0.49 3.41 16 10 C 0.06 1.48 6.01 86.30 0.52 2.00 16 11 N -0.67 -22.77 6.12 -517.91 -3.17 -25.95 16 12 C 0.07 2.40 6.17 85.56 0.53 2.92 16 13 C 0.44 21.61 7.82 87.66 0.69 22.30 16 14 O -0.62 -35.53 15.78 -3.06 -0.05 -35.58 16 15 N -0.57 -30.20 5.29 -306.98 -1.62 -31.83 16 16 C -0.33 -19.44 9.68 84.04 0.81 -18.63 16 17 H 0.08 4.92 7.16 -2.91 -0.02 4.90 16 18 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16 19 N -0.92 -50.37 13.05 21.67 0.28 -50.09 16 20 Si 1.00 43.57 29.55 68.60 2.03 45.60 16 21 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 22 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 23 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 24 C 0.04 0.81 11.92 67.39 0.80 1.61 16 25 O -0.18 -2.93 10.52 4.50 0.05 -2.89 16 26 H 0.10 0.13 8.14 -2.39 -0.02 0.11 16 27 H 0.08 0.23 8.14 -2.38 -0.02 0.22 16 28 H 0.11 -0.06 8.14 -2.39 -0.02 -0.08 16 29 H 0.20 1.30 4.89 -2.91 -0.01 1.29 16 30 H 0.08 0.61 7.69 -2.39 -0.02 0.59 16 31 H 0.09 0.80 8.03 -2.39 -0.02 0.79 16 32 H 0.10 0.89 4.78 -2.39 -0.01 0.88 16 33 H 0.11 2.19 8.07 -2.39 -0.02 2.17 16 34 H 0.06 1.82 7.42 -2.38 -0.02 1.81 16 35 H 0.02 0.53 8.14 -2.39 -0.02 0.51 16 36 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.34 12.54 8.43 -89.70 -0.76 11.78 16 38 H 0.06 2.01 8.14 -2.38 -0.02 2.00 16 39 H 0.11 3.49 8.14 -2.39 -0.02 3.47 16 40 H 0.40 19.84 7.90 -92.71 -0.73 19.11 16 41 H 0.28 14.16 8.31 -92.71 -0.77 13.39 16 42 H 0.23 3.33 8.06 -2.91 -0.02 3.31 16 Total: -1.00 -78.50 360.42 1.68 -76.82 By element: Atomic # 1 Polarization: 36.15 SS G_CDS: -0.42 Total: 35.73 kcal Atomic # 6 Polarization: 16.23 SS G_CDS: 7.10 Total: 23.33 kcal Atomic # 7 Polarization: -115.83 SS G_CDS: -6.96 Total: -122.79 kcal Atomic # 8 Polarization: -58.61 SS G_CDS: -0.07 Total: -58.68 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -78.50 1.68 -76.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493528861.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.904 kcal (2) G-P(sol) polarization free energy of solvation -78.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds