Wall clock time and date at job start Fri Apr 10 2020 18:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00090 * 3 2 1 5 5 H 1.48501 * 109.47062 * 210.00041 * 3 2 1 6 6 H 1.48499 * 109.46981 * 330.00195 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00366 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99878 * 0.02562 * 7 2 1 10 10 C 1.46496 * 119.99718 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47205 * 179.97438 * 10 9 7 12 12 H 1.09005 * 109.47387 * 295.00694 * 11 10 9 13 13 N 1.46504 * 109.46704 * 54.99916 * 11 10 9 14 14 C 1.34774 * 120.00234 * 205.00070 * 13 11 10 15 15 O 1.21279 * 119.99858 * 0.02562 * 14 13 11 16 16 C 1.50704 * 120.00062 * 180.02562 * 14 13 11 17 17 C 1.52996 * 109.46998 * 179.97438 * 16 14 13 18 18 H 1.08996 * 110.54688 * 303.60850 * 17 16 14 19 19 C 1.54229 * 110.60935 * 180.58422 * 17 16 14 20 20 C 1.51307 * 103.56068 * 241.48887 * 19 17 16 21 21 O 1.21225 * 125.39588 * 179.97438 * 20 19 17 22 22 N 1.33879 * 109.20600 * 359.97438 * 20 19 17 23 23 C 1.33872 * 114.47772 * 0.02562 * 22 20 19 24 24 O 1.21226 * 125.40199 * 180.02562 * 23 22 20 25 25 C 1.52995 * 109.47408 * 174.99826 * 11 10 9 26 26 C 1.53000 * 117.50163 * 248.62521 * 25 11 10 27 27 C 1.53006 * 117.49602 * 180.02562 * 25 11 10 28 28 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 29 29 H 0.96996 * 119.99783 * 359.97438 * 9 7 2 30 30 H 1.08997 * 109.47963 * 300.00084 * 10 9 7 31 31 H 1.09000 * 109.47287 * 60.00394 * 10 9 7 32 32 H 0.97009 * 119.99951 * 25.00564 * 13 11 10 33 33 H 1.09000 * 109.46875 * 299.99881 * 16 14 13 34 34 H 1.08995 * 109.47077 * 60.00025 * 16 14 13 35 35 H 1.09005 * 110.59815 * 0.02562 * 19 17 16 36 36 H 1.08997 * 110.60298 * 122.96258 * 19 17 16 37 37 H 0.97001 * 122.75991 * 179.97438 * 22 20 19 38 38 H 1.09000 * 115.55028 * 34.33976 * 25 11 10 39 39 H 1.08992 * 117.49840 * 359.97438 * 26 25 11 40 40 H 1.09001 * 117.49758 * 145.02264 * 26 25 11 41 41 H 1.09004 * 117.49716 * 214.97759 * 27 25 11 42 42 H 1.08996 * 117.50450 * 359.97438 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 1.4001 5 1 3.5478 1.4403 -0.7001 6 1 1.4476 2.6527 -0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 6 1.0640 -4.8197 0.0012 12 1 0.4981 -4.8134 0.9327 13 7 0.1441 -4.6763 -1.1300 14 6 -1.0803 -5.2371 -1.0781 15 8 -1.4207 -5.8602 -0.0949 16 6 -2.0264 -5.0901 -2.2420 17 6 -3.3366 -5.8152 -1.9288 18 1 -3.1471 -6.8618 -1.6905 19 6 -4.3203 -5.6936 -3.1105 20 6 -5.4997 -4.9556 -2.5158 21 8 -6.5094 -4.6489 -3.1125 22 7 -5.2515 -4.6952 -1.2263 23 6 -4.0641 -5.1335 -0.7904 24 8 -3.6391 -5.0053 0.3377 25 6 1.8248 -6.1411 -0.1246 26 6 1.6641 -6.9277 -1.4270 27 6 1.0020 -7.4310 -0.1432 28 1 -0.4850 0.8401 0.0004 29 1 0.3557 -2.3880 0.0005 30 1 2.6849 -3.7145 -0.8894 31 1 2.6848 -3.7144 0.8905 32 1 0.4163 -4.1777 -1.9163 33 1 -2.2280 -4.0329 -2.4149 34 1 -1.5753 -5.5246 -3.1340 35 1 -3.8758 -5.1168 -3.9216 36 1 -4.6223 -6.6804 -3.4613 37 1 -5.8801 -4.2267 -0.6550 38 1 2.7980 -6.1718 0.3654 39 1 1.0160 -6.5041 -2.1940 40 1 2.5317 -7.4759 -1.7942 41 1 1.4340 -8.3104 0.3345 42 1 -0.0812 -7.3382 -0.0654 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498879156.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:03:26 Heat of formation + Delta-G solvation = -61.044025 kcal Electronic energy + Delta-G solvation = -26163.664830 eV Core-core repulsion = 22338.327787 eV Total energy + Delta-G solvation = -3825.337042 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.152 amu Computer time = -0.59 seconds Orbital eigenvalues (eV) -41.94600 -39.91814 -38.60625 -37.12690 -35.93035 -34.89525 -33.65223 -33.23293 -31.20300 -29.19645 -27.79469 -25.20806 -24.03011 -22.23890 -21.99694 -21.55197 -21.38547 -20.11774 -19.59542 -18.01269 -17.37868 -17.10860 -16.55124 -16.25897 -15.98068 -15.62590 -15.22335 -14.68931 -14.52355 -14.19425 -14.09451 -13.76442 -13.47663 -13.30188 -13.03765 -12.91556 -12.75159 -12.31889 -11.93711 -11.61532 -11.53968 -11.32273 -11.16311 -10.91165 -10.83726 -10.79030 -10.36119 -10.24703 -10.10896 -9.99233 -9.80360 -9.57870 -9.44287 -8.93053 -8.57572 -6.97719 -5.80109 -3.09857 1.41736 2.61621 2.68347 2.91737 3.36549 3.41304 3.46368 3.47848 3.88638 4.02516 4.07557 4.19865 4.45106 4.54541 4.86827 4.91740 5.07508 5.11051 5.19657 5.21309 5.28200 5.35287 5.52623 5.60483 5.62928 5.78933 5.82926 5.87710 6.02876 6.05295 6.22718 6.32075 6.49845 6.52177 6.53394 6.71048 6.96844 7.20074 7.66211 7.80937 7.86271 8.37782 8.56675 9.49731 10.05868 10.41240 11.42139 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.010847 B = 0.004482 C = 0.003412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2580.728079 B = 6245.822354 C = 8203.848642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.011 4.011 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.282 1.282 6 H -0.292 1.292 7 C -0.242 4.242 8 H 0.071 0.929 9 N -0.731 5.731 10 C 0.148 3.852 11 C 0.170 3.830 12 H 0.091 0.909 13 N -0.710 5.710 14 C 0.505 3.495 15 O -0.515 6.515 16 C -0.132 4.132 17 C -0.106 4.106 18 H 0.130 0.870 19 C -0.156 4.156 20 C 0.531 3.469 21 O -0.493 6.493 22 N -0.684 5.684 23 C 0.521 3.479 24 O -0.433 6.433 25 C -0.160 4.160 26 C -0.177 4.177 27 C -0.187 4.187 28 H 0.255 0.745 29 H 0.386 0.614 30 H 0.026 0.974 31 H 0.032 0.968 32 H 0.403 0.597 33 H 0.102 0.898 34 H 0.110 0.890 35 H 0.124 0.876 36 H 0.122 0.878 37 H 0.414 0.586 38 H 0.107 0.893 39 H 0.091 0.909 40 H 0.085 0.915 41 H 0.082 0.918 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.992 -16.074 -8.345 18.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.208 4.208 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.207 1.207 6 H -0.218 1.218 7 C -0.373 4.373 8 H 0.089 0.911 9 N -0.376 5.376 10 C 0.020 3.980 11 C 0.065 3.935 12 H 0.109 0.891 13 N -0.361 5.361 14 C 0.290 3.710 15 O -0.391 6.391 16 C -0.172 4.172 17 C -0.128 4.128 18 H 0.148 0.852 19 C -0.196 4.196 20 C 0.319 3.681 21 O -0.366 6.366 22 N -0.351 5.351 23 C 0.306 3.694 24 O -0.298 6.298 25 C -0.179 4.179 26 C -0.214 4.214 27 C -0.223 4.223 28 H 0.065 0.935 29 H 0.220 0.780 30 H 0.043 0.957 31 H 0.050 0.950 32 H 0.238 0.762 33 H 0.120 0.880 34 H 0.128 0.872 35 H 0.142 0.858 36 H 0.141 0.859 37 H 0.253 0.747 38 H 0.125 0.875 39 H 0.110 0.890 40 H 0.103 0.897 41 H 0.101 0.899 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -5.262 -16.247 -7.404 18.614 hybrid contribution 0.092 1.550 -0.056 1.554 sum -5.170 -14.697 -7.460 17.274 Atomic orbital electron populations 1.69672 1.05113 1.25660 1.57505 1.24740 0.95487 0.97685 1.02854 0.86197 0.78616 0.83821 0.77571 1.21702 1.20749 1.21811 1.19215 0.91027 0.84077 1.43011 0.91149 1.42349 1.06001 0.99716 1.89551 1.20905 0.93082 0.85187 0.98837 1.20712 0.90120 0.92582 0.90102 0.89108 1.45920 1.14530 1.54852 1.20791 1.20285 0.82317 0.79791 0.88562 1.90722 1.75089 1.40542 1.32697 1.21628 0.93207 1.03278 0.99078 1.21793 0.94719 1.03459 0.92805 0.85180 1.22600 0.93722 1.03893 0.99344 1.20737 0.88218 0.77647 0.81474 1.90807 1.29527 1.51664 1.64590 1.44874 1.21180 1.54893 1.14151 1.20675 0.80734 0.78197 0.89834 1.90941 1.67642 1.51485 1.19754 1.22693 1.00730 0.92605 1.01907 1.22851 1.02901 1.04037 0.91620 1.23315 1.01615 0.96757 1.00652 0.93521 0.77993 0.95668 0.94988 0.76193 0.87964 0.87217 0.85825 0.85948 0.74670 0.87460 0.89043 0.89678 0.89928 0.86480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.81 13.06 55.49 0.72 -27.09 16 2 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 3 Si 0.91 22.10 29.55 -169.99 -5.02 17.07 16 4 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 5 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 7 C -0.24 -6.60 9.99 -15.06 -0.15 -6.75 16 8 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 9 N -0.73 -17.82 5.43 -59.91 -0.33 -18.15 16 10 C 0.15 2.82 5.80 -4.04 -0.02 2.80 16 11 C 0.17 2.77 2.59 -67.93 -0.18 2.59 16 12 H 0.09 1.75 7.58 -51.93 -0.39 1.36 16 13 N -0.71 -10.23 3.06 -53.80 -0.16 -10.40 16 14 C 0.51 7.04 6.33 -10.98 -0.07 6.97 16 15 O -0.51 -8.76 10.60 -17.45 -0.18 -8.95 16 16 C -0.13 -1.22 5.04 -27.88 -0.14 -1.36 16 17 C -0.11 -0.91 2.72 -90.82 -0.25 -1.16 16 18 H 0.13 1.02 8.03 -51.93 -0.42 0.60 16 19 C -0.16 -0.95 6.67 -26.94 -0.18 -1.13 16 20 C 0.53 5.21 8.55 -11.09 -0.09 5.11 16 21 O -0.49 -6.44 18.02 5.60 0.10 -6.33 16 22 N -0.68 -7.08 5.48 -11.39 -0.06 -7.14 16 23 C 0.52 6.49 7.71 -11.08 -0.09 6.41 16 24 O -0.43 -7.58 15.42 -17.41 -0.27 -7.85 16 25 C -0.16 -2.17 5.71 -90.62 -0.52 -2.69 16 26 C -0.18 -2.06 9.73 -26.75 -0.26 -2.32 16 27 C -0.19 -2.42 9.82 -26.75 -0.26 -2.68 16 28 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 29 H 0.39 10.09 7.33 -40.82 -0.30 9.79 16 30 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.40 5.48 8.60 -40.82 -0.35 5.12 16 33 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.12 0.55 7.74 -51.93 -0.40 0.15 16 36 H 0.12 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.41 3.93 8.96 -40.82 -0.37 3.57 16 38 H 0.11 1.38 8.11 -51.93 -0.42 0.96 16 39 H 0.09 1.01 6.66 -51.93 -0.35 0.67 16 40 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.12 1.74 5.02 -51.93 -0.26 1.48 16 LS Contribution 349.28 15.07 5.26 5.26 Total: -1.00 -35.62 349.28 -8.01 -43.63 By element: Atomic # 1 Polarization: 20.34 SS G_CDS: -5.76 Total: 14.57 kcal Atomic # 6 Polarization: 7.67 SS G_CDS: -2.30 Total: 5.37 kcal Atomic # 7 Polarization: -62.95 SS G_CDS: 0.17 Total: -62.77 kcal Atomic # 8 Polarization: -22.78 SS G_CDS: -0.35 Total: -23.14 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -35.62 -8.01 -43.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498879156.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.415 kcal (2) G-P(sol) polarization free energy of solvation -35.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.59 seconds