Wall clock time and date at job start Fri Apr 10 2020 18:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00090 * 3 2 1 5 5 H 1.48501 * 109.47062 * 210.00041 * 3 2 1 6 6 H 1.48499 * 109.46981 * 330.00195 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00366 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99878 * 0.02562 * 7 2 1 10 10 C 1.46496 * 119.99718 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47205 * 179.97438 * 10 9 7 12 12 H 1.09005 * 109.47387 * 295.00694 * 11 10 9 13 13 N 1.46504 * 109.46704 * 54.99916 * 11 10 9 14 14 C 1.34774 * 120.00234 * 205.00070 * 13 11 10 15 15 O 1.21279 * 119.99858 * 0.02562 * 14 13 11 16 16 C 1.50704 * 120.00062 * 180.02562 * 14 13 11 17 17 C 1.52996 * 109.46998 * 179.97438 * 16 14 13 18 18 H 1.08996 * 110.54688 * 303.60850 * 17 16 14 19 19 C 1.54229 * 110.60935 * 180.58422 * 17 16 14 20 20 C 1.51307 * 103.56068 * 241.48887 * 19 17 16 21 21 O 1.21225 * 125.39588 * 179.97438 * 20 19 17 22 22 N 1.33879 * 109.20600 * 359.97438 * 20 19 17 23 23 C 1.33872 * 114.47772 * 0.02562 * 22 20 19 24 24 O 1.21226 * 125.40199 * 180.02562 * 23 22 20 25 25 C 1.52995 * 109.47408 * 174.99826 * 11 10 9 26 26 C 1.53000 * 117.50163 * 248.62521 * 25 11 10 27 27 C 1.53006 * 117.49602 * 180.02562 * 25 11 10 28 28 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 29 29 H 0.96996 * 119.99783 * 359.97438 * 9 7 2 30 30 H 1.08997 * 109.47963 * 300.00084 * 10 9 7 31 31 H 1.09000 * 109.47287 * 60.00394 * 10 9 7 32 32 H 0.97009 * 119.99951 * 25.00564 * 13 11 10 33 33 H 1.09000 * 109.46875 * 299.99881 * 16 14 13 34 34 H 1.08995 * 109.47077 * 60.00025 * 16 14 13 35 35 H 1.09005 * 110.59815 * 0.02562 * 19 17 16 36 36 H 1.08997 * 110.60298 * 122.96258 * 19 17 16 37 37 H 0.97001 * 122.75991 * 179.97438 * 22 20 19 38 38 H 1.09000 * 115.55028 * 34.33976 * 25 11 10 39 39 H 1.08992 * 117.49840 * 359.97438 * 26 25 11 40 40 H 1.09001 * 117.49758 * 145.02264 * 26 25 11 41 41 H 1.09004 * 117.49716 * 214.97759 * 27 25 11 42 42 H 1.08996 * 117.50450 * 359.97438 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 1.4001 5 1 3.5478 1.4403 -0.7001 6 1 1.4476 2.6527 -0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 6 1.0640 -4.8197 0.0012 12 1 0.4981 -4.8134 0.9327 13 7 0.1441 -4.6763 -1.1300 14 6 -1.0803 -5.2371 -1.0781 15 8 -1.4207 -5.8602 -0.0949 16 6 -2.0264 -5.0901 -2.2420 17 6 -3.3366 -5.8152 -1.9288 18 1 -3.1471 -6.8618 -1.6905 19 6 -4.3203 -5.6936 -3.1105 20 6 -5.4997 -4.9556 -2.5158 21 8 -6.5094 -4.6489 -3.1125 22 7 -5.2515 -4.6952 -1.2263 23 6 -4.0641 -5.1335 -0.7904 24 8 -3.6391 -5.0053 0.3377 25 6 1.8248 -6.1411 -0.1246 26 6 1.6641 -6.9277 -1.4270 27 6 1.0020 -7.4310 -0.1432 28 1 -0.4850 0.8401 0.0004 29 1 0.3557 -2.3880 0.0005 30 1 2.6849 -3.7145 -0.8894 31 1 2.6848 -3.7144 0.8905 32 1 0.4163 -4.1777 -1.9163 33 1 -2.2280 -4.0329 -2.4149 34 1 -1.5753 -5.5246 -3.1340 35 1 -3.8758 -5.1168 -3.9216 36 1 -4.6223 -6.6804 -3.4613 37 1 -5.8801 -4.2267 -0.6550 38 1 2.7980 -6.1718 0.3654 39 1 1.0160 -6.5041 -2.1940 40 1 2.5317 -7.4759 -1.7942 41 1 1.4340 -8.3104 0.3345 42 1 -0.0812 -7.3382 -0.0654 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498879156.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:03:24 Heat of formation + Delta-G solvation = -87.767314 kcal Electronic energy + Delta-G solvation = -26164.823638 eV Core-core repulsion = 22338.327787 eV Total energy + Delta-G solvation = -3826.495851 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.152 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.80719 -41.03159 -39.60695 -38.27022 -36.91014 -36.51778 -34.69039 -34.45234 -32.98153 -30.34944 -29.01073 -26.24016 -25.74830 -23.41277 -22.98682 -22.71857 -22.35968 -21.08072 -20.74487 -19.25629 -18.90611 -18.08333 -17.61215 -17.27462 -17.06857 -16.88113 -16.44799 -16.14177 -15.43705 -15.40742 -15.18825 -15.10804 -14.77982 -14.73932 -14.33347 -13.84423 -13.67956 -13.51889 -13.12708 -12.93098 -12.76911 -12.65940 -12.58834 -12.20166 -12.12585 -12.07917 -11.82705 -11.67912 -11.34889 -11.19272 -10.99610 -10.95594 -10.75609 -10.52414 -9.76648 -9.00884 -7.94651 -5.24017 0.53805 1.47792 1.49526 1.57699 1.77125 1.84080 1.88931 2.34207 2.55806 3.04082 3.20328 3.26691 3.39821 3.48233 3.69827 3.76823 4.00944 4.10901 4.19244 4.23695 4.38106 4.51460 4.55468 4.60380 4.65770 4.74781 4.85021 4.92316 4.92955 4.97464 5.06473 5.13482 5.22036 5.35070 5.48482 5.50499 5.69570 5.73762 6.25953 6.36078 6.75961 6.91269 7.33538 7.49787 8.07694 8.31501 9.28291 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.010847 B = 0.004482 C = 0.003412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2580.728079 B = 6245.822354 C = 8203.848642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.073 4.073 3 Si 0.972 3.028 4 H -0.293 1.293 5 H -0.265 1.265 6 H -0.297 1.297 7 C -0.243 4.243 8 H 0.079 0.921 9 N -0.742 5.742 10 C 0.150 3.850 11 C 0.182 3.818 12 H 0.049 0.951 13 N -0.709 5.709 14 C 0.495 3.505 15 O -0.548 6.548 16 C -0.125 4.125 17 C -0.097 4.097 18 H 0.144 0.856 19 C -0.135 4.135 20 C 0.531 3.469 21 O -0.527 6.527 22 N -0.686 5.686 23 C 0.515 3.485 24 O -0.496 6.496 25 C -0.174 4.174 26 C -0.152 4.152 27 C -0.189 4.189 28 H 0.249 0.751 29 H 0.374 0.626 30 H 0.043 0.957 31 H 0.028 0.972 32 H 0.409 0.591 33 H 0.100 0.900 34 H 0.160 0.840 35 H 0.153 0.847 36 H 0.159 0.841 37 H 0.412 0.588 38 H 0.115 0.885 39 H 0.100 0.900 40 H 0.106 0.894 41 H 0.095 0.905 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.634 -17.437 -11.111 20.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.265 4.265 3 Si 0.801 3.199 4 H -0.220 1.220 5 H -0.190 1.190 6 H -0.223 1.223 7 C -0.375 4.375 8 H 0.097 0.903 9 N -0.385 5.385 10 C 0.023 3.977 11 C 0.077 3.923 12 H 0.068 0.932 13 N -0.361 5.361 14 C 0.282 3.718 15 O -0.426 6.426 16 C -0.165 4.165 17 C -0.118 4.118 18 H 0.161 0.839 19 C -0.173 4.173 20 C 0.321 3.679 21 O -0.402 6.402 22 N -0.350 5.350 23 C 0.303 3.697 24 O -0.366 6.366 25 C -0.193 4.193 26 C -0.189 4.189 27 C -0.226 4.226 28 H 0.058 0.942 29 H 0.206 0.794 30 H 0.060 0.940 31 H 0.046 0.954 32 H 0.245 0.755 33 H 0.119 0.881 34 H 0.178 0.822 35 H 0.171 0.829 36 H 0.177 0.823 37 H 0.250 0.750 38 H 0.133 0.867 39 H 0.118 0.882 40 H 0.124 0.876 41 H 0.113 0.887 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -3.872 -17.643 -10.212 20.750 hybrid contribution -0.348 1.927 0.876 2.145 sum -4.219 -15.716 -9.336 18.761 Atomic orbital electron populations 1.69838 1.06678 1.25891 1.59572 1.25528 0.96256 1.01007 1.03706 0.85163 0.77908 0.79614 0.77191 1.22023 1.18966 1.22339 1.19640 0.91581 0.85162 1.41069 0.90343 1.42524 1.05618 1.00928 1.89436 1.21025 0.93499 0.84067 0.99076 1.20318 0.89548 0.93085 0.89389 0.93234 1.45897 1.14801 1.55188 1.20223 1.21149 0.82323 0.78796 0.89490 1.90724 1.75496 1.41976 1.34399 1.21735 0.92331 1.03770 0.98660 1.21853 0.94521 1.03425 0.92017 0.83850 1.22705 0.90654 1.05605 0.98370 1.21413 0.88719 0.76935 0.80805 1.90799 1.31233 1.53146 1.65009 1.45007 1.20783 1.54398 1.14829 1.21458 0.81016 0.77271 0.89951 1.90914 1.69069 1.54116 1.22508 1.22575 1.00821 0.91362 1.04586 1.22957 1.03125 1.02126 0.90675 1.23249 1.00521 0.96591 1.02222 0.94222 0.79428 0.93951 0.95373 0.75549 0.88146 0.82201 0.82934 0.82306 0.74955 0.86727 0.88164 0.87576 0.88690 0.88408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.04 13.06 21.65 0.28 -58.76 16 2 C -0.07 -4.11 5.50 84.86 0.47 -3.65 16 3 Si 0.97 45.55 29.55 68.60 2.03 47.57 16 4 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 5 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 6 H -0.30 -14.02 7.11 99.48 0.71 -13.32 16 7 C -0.24 -13.20 9.99 84.03 0.84 -12.36 16 8 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 9 N -0.74 -36.56 5.43 -343.47 -1.87 -38.43 16 10 C 0.15 5.70 5.80 86.38 0.50 6.20 16 11 C 0.18 5.99 2.59 44.99 0.12 6.11 16 12 H 0.05 2.03 7.58 -2.38 -0.02 2.01 16 13 N -0.71 -20.02 3.06 -442.53 -1.35 -21.37 16 14 C 0.50 13.50 6.33 87.66 0.56 14.05 16 15 O -0.55 -19.11 10.60 18.98 0.20 -18.91 16 16 C -0.13 -1.99 5.04 29.85 0.15 -1.84 16 17 C -0.10 -1.43 2.72 -10.93 -0.03 -1.46 16 18 H 0.14 1.84 8.03 -2.39 -0.02 1.82 16 19 C -0.13 -1.10 6.67 30.46 0.20 -0.90 16 20 C 0.53 9.57 8.55 87.99 0.75 10.32 16 21 O -0.53 -13.20 18.02 -2.86 -0.05 -13.25 16 22 N -0.69 -14.26 5.48 -427.79 -2.34 -16.60 16 23 C 0.52 12.98 7.71 88.00 0.68 13.66 16 24 O -0.50 -18.45 15.42 19.14 0.30 -18.15 16 25 C -0.17 -4.51 5.71 -10.79 -0.06 -4.58 16 26 C -0.15 -3.07 9.73 30.58 0.30 -2.77 16 27 C -0.19 -4.63 9.82 30.58 0.30 -4.33 16 28 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 29 H 0.37 20.10 7.33 -92.71 -0.68 19.42 16 30 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.41 10.53 8.60 -92.70 -0.80 9.73 16 33 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.16 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.15 0.52 7.74 -2.38 -0.02 0.50 16 36 H 0.16 0.31 8.14 -2.39 -0.02 0.29 16 37 H 0.41 8.35 8.96 -92.71 -0.83 7.52 16 38 H 0.11 2.78 8.11 -2.39 -0.02 2.77 16 39 H 0.10 1.86 6.66 -2.39 -0.02 1.84 16 40 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.09 2.06 8.14 -2.38 -0.02 2.04 16 42 H 0.10 2.87 5.02 -2.39 -0.01 2.86 16 Total: -1.00 -81.56 349.28 0.74 -80.82 By element: Atomic # 1 Polarization: 39.83 SS G_CDS: -1.22 Total: 38.61 kcal Atomic # 6 Polarization: 13.69 SS G_CDS: 4.77 Total: 18.46 kcal Atomic # 7 Polarization: -129.88 SS G_CDS: -5.28 Total: -135.16 kcal Atomic # 8 Polarization: -50.75 SS G_CDS: 0.44 Total: -50.31 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.57 kcal Total: -81.56 0.74 -80.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498879156.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.950 kcal (2) G-P(sol) polarization free energy of solvation -81.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds