Wall clock time and date at job start Fri Apr 10 2020 18:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86798 * 120.00347 * 2 1 4 4 H 1.48502 * 109.46941 * 269.99777 * 3 2 1 5 5 H 1.48502 * 109.46938 * 29.99635 * 3 2 1 6 6 H 1.48500 * 109.46986 * 149.99898 * 3 2 1 7 7 C 1.38812 * 119.99621 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99890 * 0.02562 * 7 2 1 9 9 N 1.36939 * 120.00163 * 180.02562 * 7 2 1 10 10 C 1.46498 * 120.00184 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.46835 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.47284 * 65.00325 * 11 10 9 13 13 N 1.46496 * 109.47673 * 305.00024 * 11 10 9 14 14 C 1.34774 * 120.00246 * 154.99962 * 13 11 10 15 15 O 1.21280 * 119.99669 * 0.02562 * 14 13 11 16 16 C 1.50697 * 119.99782 * 180.02562 * 14 13 11 17 17 C 1.53003 * 109.46954 * 180.02562 * 16 14 13 18 18 H 1.09006 * 110.53815 * 56.39741 * 17 16 14 19 19 C 1.54226 * 110.60524 * 179.41066 * 17 16 14 20 20 C 1.51315 * 103.55557 * 118.52141 * 19 17 16 21 21 O 1.21224 * 125.39592 * 179.97438 * 20 19 17 22 22 N 1.33877 * 109.20493 * 359.75096 * 20 19 17 23 23 C 1.33872 * 114.47412 * 0.44460 * 22 20 19 24 24 O 1.21233 * 125.39808 * 179.82782 * 23 22 20 25 25 C 1.53005 * 109.46744 * 184.99935 * 11 10 9 26 26 C 1.53003 * 117.50048 * 248.62149 * 25 11 10 27 27 C 1.52991 * 59.99988 * 252.51332 * 26 25 11 28 28 H 0.97003 * 119.99619 * 0.02562 * 1 2 3 29 29 H 0.97004 * 119.99799 * 0.02562 * 9 7 2 30 30 H 1.09005 * 109.46985 * 59.99987 * 10 9 7 31 31 H 1.09000 * 109.46677 * 300.00320 * 10 9 7 32 32 H 0.97001 * 119.99385 * 335.00005 * 13 11 10 33 33 H 1.08998 * 109.47376 * 59.99930 * 16 14 13 34 34 H 1.09008 * 109.47349 * 299.99757 * 16 14 13 35 35 H 1.09010 * 110.60652 * 237.03790 * 19 17 16 36 36 H 1.08999 * 110.60879 * 0.02562 * 19 17 16 37 37 H 0.97003 * 122.76342 * 180.24067 * 22 20 19 38 38 H 1.08993 * 115.55121 * 34.33144 * 25 11 10 39 39 H 1.09002 * 117.49661 * 0.02562 * 26 25 11 40 40 H 1.08996 * 117.49989 * 145.01592 * 26 25 11 41 41 H 1.09003 * 117.50240 * 252.50439 * 27 26 25 42 42 H 1.09000 * 117.49930 * 107.49120 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5479 1.4400 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1374 0.0005 9 7 3.3796 -1.2023 0.0011 10 6 4.1120 -2.4711 0.0011 11 6 5.6163 -2.1915 0.0024 12 1 5.8934 -1.6986 0.9342 13 7 5.9526 -1.3229 -1.1283 14 6 7.0505 -0.5430 -1.0758 15 8 7.7603 -0.5607 -0.0925 16 6 7.3961 0.3509 -2.2387 17 6 8.6793 1.1228 -1.9249 18 1 9.4910 0.4350 -1.6873 19 6 9.0657 2.0365 -3.1058 20 6 9.0165 3.4264 -2.5097 21 8 9.2565 4.4547 -3.1052 22 7 8.6612 3.3409 -1.2218 23 6 8.4524 2.0925 -0.7857 24 8 8.1277 1.7876 0.3418 25 6 6.3803 -3.5112 -0.1234 26 6 7.1808 -3.9827 1.0923 27 6 7.9087 -3.4437 -0.1407 28 1 -0.4850 0.8401 -0.0004 29 1 3.8647 -0.3623 0.0014 30 1 3.8490 -3.0424 -0.8892 31 1 3.8482 -3.0428 0.8908 32 1 5.3851 -1.3092 -1.9149 33 1 6.5815 1.0543 -2.4110 34 1 7.5469 -0.2562 -3.1315 35 1 10.0714 1.8050 -3.4569 36 1 8.3435 1.9414 -3.9167 37 1 8.5659 4.1192 -0.6507 38 1 5.9032 -4.2738 -0.7387 39 1 7.1627 -3.3529 1.9818 40 1 7.2302 -5.0557 1.2770 41 1 8.4372 -4.1622 -0.7673 42 1 8.3699 -2.4592 -0.0625 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498879159.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:03:29 Heat of formation + Delta-G solvation = -89.974950 kcal Electronic energy + Delta-G solvation = -26197.067526 eV Core-core repulsion = 22370.475944 eV Total energy + Delta-G solvation = -3826.591581 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.152 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.84100 -40.93387 -39.63391 -38.38759 -36.94746 -36.73623 -34.91806 -34.49218 -33.29852 -30.57676 -29.12971 -26.26711 -25.55521 -23.30356 -23.00158 -22.73335 -22.31725 -21.32002 -20.99632 -19.80005 -18.94753 -18.07471 -17.71128 -17.32302 -16.97743 -16.72633 -16.53890 -16.18573 -15.79350 -15.54333 -15.17408 -15.05863 -14.82781 -14.72889 -14.52742 -13.94442 -13.85317 -13.57301 -13.55523 -12.97801 -12.87527 -12.64150 -12.54023 -12.24504 -12.14725 -12.13394 -11.87333 -11.70721 -11.38960 -11.20819 -11.09079 -11.03428 -10.97577 -10.55726 -9.82806 -9.33861 -8.06256 -5.38879 0.49850 1.28872 1.35374 1.40262 1.73567 1.80413 1.84229 2.22684 2.42154 3.03486 3.18346 3.23892 3.25857 3.46084 3.46964 3.73386 3.88973 4.02024 4.09472 4.19946 4.29093 4.39796 4.47609 4.57066 4.64162 4.68483 4.83269 4.86703 4.91070 4.94328 5.03696 5.09407 5.12409 5.33129 5.45512 5.64935 5.66663 5.74478 6.17793 6.32303 6.72181 6.87286 7.03893 7.45306 7.79710 7.97885 9.15260 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.010290 B = 0.005277 C = 0.003775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2720.435865 B = 5304.767084 C = 7415.628859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.979 5.979 2 C -0.055 4.055 3 Si 0.945 3.055 4 H -0.264 1.264 5 H -0.299 1.299 6 H -0.274 1.274 7 C -0.230 4.230 8 H 0.064 0.936 9 N -0.756 5.756 10 C 0.152 3.848 11 C 0.178 3.822 12 H 0.055 0.945 13 N -0.715 5.715 14 C 0.494 3.506 15 O -0.548 6.548 16 C -0.127 4.127 17 C -0.098 4.098 18 H 0.144 0.856 19 C -0.135 4.135 20 C 0.530 3.470 21 O -0.526 6.526 22 N -0.686 5.686 23 C 0.515 3.485 24 O -0.496 6.496 25 C -0.161 4.161 26 C -0.176 4.176 27 C -0.171 4.171 28 H 0.258 0.742 29 H 0.363 0.637 30 H 0.050 0.950 31 H 0.035 0.965 32 H 0.411 0.589 33 H 0.104 0.896 34 H 0.162 0.838 35 H 0.158 0.842 36 H 0.154 0.846 37 H 0.412 0.588 38 H 0.121 0.879 39 H 0.075 0.925 40 H 0.110 0.890 41 H 0.106 0.894 42 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.421 -2.081 -10.422 25.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.630 5.630 2 C -0.247 4.247 3 Si 0.774 3.226 4 H -0.190 1.190 5 H -0.226 1.226 6 H -0.200 1.200 7 C -0.361 4.361 8 H 0.082 0.918 9 N -0.402 5.402 10 C 0.026 3.974 11 C 0.073 3.927 12 H 0.073 0.927 13 N -0.367 5.367 14 C 0.281 3.719 15 O -0.426 6.426 16 C -0.167 4.167 17 C -0.119 4.119 18 H 0.162 0.838 19 C -0.174 4.174 20 C 0.321 3.679 21 O -0.401 6.401 22 N -0.351 5.351 23 C 0.303 3.697 24 O -0.367 6.367 25 C -0.181 4.181 26 C -0.214 4.214 27 C -0.208 4.208 28 H 0.067 0.933 29 H 0.196 0.804 30 H 0.068 0.932 31 H 0.053 0.947 32 H 0.247 0.753 33 H 0.122 0.878 34 H 0.180 0.820 35 H 0.176 0.824 36 H 0.172 0.828 37 H 0.251 0.749 38 H 0.139 0.861 39 H 0.094 0.906 40 H 0.129 0.871 41 H 0.124 0.876 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 23.679 -1.977 -9.524 25.599 hybrid contribution -0.644 1.728 0.812 2.014 sum 23.036 -0.250 -8.712 24.629 Atomic orbital electron populations 1.69857 1.06837 1.26533 1.59771 1.25339 0.95896 1.00537 1.02893 0.85568 0.77843 0.80709 0.78519 1.18973 1.22619 1.20020 1.19060 0.82491 0.93611 1.40918 0.91760 1.42702 1.02539 1.03965 1.90980 1.21039 0.88725 0.87768 0.99885 1.20467 0.93028 0.89585 0.89664 0.92676 1.45973 1.27340 1.42953 1.20396 1.21184 0.80655 0.80527 0.89491 1.90728 1.50991 1.66477 1.34364 1.21776 0.97202 0.98966 0.98757 1.21868 1.01232 0.96881 0.91966 0.83805 1.22717 1.09582 0.86690 0.98418 1.21431 0.72461 0.93225 0.80808 1.90808 1.47659 1.36597 1.65042 1.45021 1.63424 1.11699 1.14945 1.21466 0.74261 0.84021 0.89945 1.90910 1.42424 1.80879 1.22440 1.22514 0.94059 0.97962 1.03569 1.22953 1.04529 1.01643 0.92247 1.23198 0.93204 1.03676 1.00708 0.93307 0.80372 0.93231 0.94739 0.75331 0.87780 0.82002 0.82408 0.82816 0.74914 0.86143 0.90593 0.87121 0.87577 0.88221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.03 13.97 21.65 0.30 -61.73 16 2 C -0.05 -3.19 5.50 84.86 0.47 -2.72 16 3 Si 0.95 46.02 27.74 68.60 1.90 47.93 16 4 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 5 H -0.30 -14.97 7.11 99.48 0.71 -14.26 16 6 H -0.27 -13.08 6.52 99.48 0.65 -12.43 16 7 C -0.23 -12.81 10.47 84.03 0.88 -11.93 16 8 H 0.06 3.88 8.06 -2.91 -0.02 3.86 16 9 N -0.76 -34.32 5.24 -343.45 -1.80 -36.11 16 10 C 0.15 5.43 5.80 86.38 0.50 5.93 16 11 C 0.18 5.30 2.43 44.99 0.11 5.41 16 12 H 0.06 2.03 7.33 -2.39 -0.02 2.01 16 13 N -0.71 -17.83 4.50 -442.54 -1.99 -19.82 16 14 C 0.49 11.81 6.83 87.66 0.60 12.40 16 15 O -0.55 -17.20 10.59 18.97 0.20 -17.00 16 16 C -0.13 -1.59 5.04 29.85 0.15 -1.44 16 17 C -0.10 -1.17 2.72 -10.93 -0.03 -1.20 16 18 H 0.14 1.47 8.03 -2.38 -0.02 1.45 16 19 C -0.14 -0.77 6.67 30.46 0.20 -0.57 16 20 C 0.53 8.22 8.55 87.99 0.75 8.97 16 21 O -0.53 -12.03 18.02 -2.86 -0.05 -12.09 16 22 N -0.69 -12.26 5.48 -427.80 -2.34 -14.60 16 23 C 0.52 11.31 7.71 87.99 0.68 11.99 16 24 O -0.50 -16.63 15.42 19.12 0.29 -16.34 16 25 C -0.16 -3.83 5.36 -10.79 -0.06 -3.88 16 26 C -0.18 -4.09 10.18 30.59 0.31 -3.78 16 27 C -0.17 -3.77 9.73 30.59 0.30 -3.47 16 28 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 29 H 0.36 16.42 5.19 -92.71 -0.48 15.94 16 30 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 31 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.41 8.87 8.60 -92.71 -0.80 8.08 16 33 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.16 0.50 8.14 -2.38 -0.02 0.48 16 35 H 0.16 -0.01 8.14 -2.38 -0.02 -0.03 16 36 H 0.15 0.13 7.74 -2.39 -0.02 0.11 16 37 H 0.41 7.13 8.96 -92.71 -0.83 6.30 16 38 H 0.12 2.50 8.11 -2.39 -0.02 2.48 16 39 H 0.08 2.04 8.05 -2.39 -0.02 2.02 16 40 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 41 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 42 H 0.10 2.64 5.02 -2.39 -0.01 2.63 16 Total: -1.00 -84.00 349.08 0.30 -83.71 By element: Atomic # 1 Polarization: 31.42 SS G_CDS: -1.08 Total: 30.34 kcal Atomic # 6 Polarization: 10.86 SS G_CDS: 4.86 Total: 15.72 kcal Atomic # 7 Polarization: -126.44 SS G_CDS: -5.83 Total: -132.27 kcal Atomic # 8 Polarization: -45.86 SS G_CDS: 0.44 Total: -45.42 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 1.90 Total: 47.93 kcal Total: -84.00 0.30 -83.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498879159.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.269 kcal (2) G-P(sol) polarization free energy of solvation -84.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds