Wall clock time and date at job start Fri Apr 10 2020 18:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86806 * 120.00264 * 2 1 4 4 H 1.48493 * 109.47165 * 270.00070 * 3 2 1 5 5 H 1.48502 * 109.46850 * 29.99649 * 3 2 1 6 6 H 1.48494 * 109.47212 * 149.99490 * 3 2 1 7 7 C 1.38809 * 120.00123 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99820 * 0.02562 * 7 2 1 9 9 N 1.36933 * 120.00520 * 180.02562 * 7 2 1 10 10 C 1.46498 * 120.00705 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47573 * 180.02562 * 10 9 7 12 12 H 1.09004 * 109.47021 * 295.00000 * 11 10 9 13 13 N 1.46496 * 109.47347 * 54.99824 * 11 10 9 14 14 C 1.34774 * 120.00246 * 205.00024 * 13 11 10 15 15 O 1.21280 * 119.99669 * 0.02562 * 14 13 11 16 16 C 1.50697 * 119.99782 * 180.02562 * 14 13 11 17 17 C 1.53003 * 109.46954 * 180.02562 * 16 14 13 18 18 H 1.09006 * 110.53815 * 56.39741 * 17 16 14 19 19 C 1.54226 * 110.60524 * 179.41066 * 17 16 14 20 20 C 1.51315 * 103.55557 * 118.52141 * 19 17 16 21 21 O 1.21224 * 125.39592 * 179.97438 * 20 19 17 22 22 N 1.33877 * 109.20493 * 359.75096 * 20 19 17 23 23 C 1.33872 * 114.47412 * 0.44460 * 22 20 19 24 24 O 1.21233 * 125.39808 * 179.82782 * 23 22 20 25 25 C 1.52995 * 109.47077 * 175.00330 * 11 10 9 26 26 C 1.52997 * 117.49748 * 248.74317 * 25 11 10 27 27 C 1.53002 * 117.49925 * 180.08441 * 25 11 10 28 28 H 0.97002 * 119.99876 * 0.02562 * 1 2 3 29 29 H 0.97002 * 119.99897 * 0.02562 * 9 7 2 30 30 H 1.09002 * 109.46931 * 59.99821 * 10 9 7 31 31 H 1.09001 * 109.47182 * 300.00367 * 10 9 7 32 32 H 0.97001 * 119.99385 * 25.00067 * 13 11 10 33 33 H 1.08998 * 109.47376 * 59.99930 * 16 14 13 34 34 H 1.09008 * 109.47349 * 299.99757 * 16 14 13 35 35 H 1.09010 * 110.60652 * 237.03790 * 19 17 16 36 36 H 1.08999 * 110.60879 * 0.02562 * 19 17 16 37 37 H 0.97003 * 122.76342 * 180.24067 * 22 20 19 38 38 H 1.09004 * 115.55367 * 34.41445 * 25 11 10 39 39 H 1.09000 * 117.49856 * 0.02562 * 26 25 11 40 40 H 1.09006 * 117.50248 * 145.01887 * 26 25 11 41 41 H 1.08993 * 117.50250 * 214.97957 * 27 25 11 42 42 H 1.09003 * 117.49655 * 359.97438 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0011 10 6 4.1122 -2.4709 0.0011 11 6 5.6164 -2.1913 0.0024 12 1 5.8950 -1.6975 -0.9286 13 7 5.9509 -1.3237 1.1344 14 6 7.0489 -0.5437 1.0842 15 8 7.7597 -0.5598 0.1017 16 6 7.3932 0.3483 2.2490 17 6 8.6761 1.1216 1.9372 18 1 8.5662 1.6876 1.0121 19 6 9.0451 2.0553 3.1080 20 6 10.3961 1.5432 3.5578 21 8 11.0537 2.0019 4.4670 22 7 10.7478 0.5003 2.7956 23 6 9.8573 0.1802 1.8486 24 8 9.9760 -0.7242 1.0500 25 6 6.3802 -3.5110 0.1280 26 6 7.1380 -3.7672 1.4322 27 6 7.9086 -3.4433 0.1498 28 1 -0.4850 0.8401 -0.0004 29 1 3.8647 -0.3622 0.0014 30 1 3.8492 -3.0423 -0.8892 31 1 3.8485 -3.0427 0.8908 32 1 5.3821 -1.3107 1.9200 33 1 7.5430 -0.2602 3.1408 34 1 6.5784 1.0515 2.4215 35 1 9.1205 3.0877 2.7664 36 1 8.3150 1.9685 3.9127 37 1 11.5807 0.0183 2.9174 38 1 5.9214 -4.3685 -0.3643 39 1 7.0921 -2.9957 2.2008 40 1 7.1781 -4.7933 1.7979 41 1 8.4553 -4.2564 -0.3277 42 1 8.3699 -2.4586 0.0742 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498879160.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:03:34 Heat of formation + Delta-G solvation = -83.672135 kcal Electronic energy + Delta-G solvation = -26315.143654 eV Core-core repulsion = 22488.825383 eV Total energy + Delta-G solvation = -3826.318271 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.152 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.82301 -41.09762 -39.59443 -38.34724 -36.90076 -36.64954 -34.73367 -34.47356 -33.27212 -30.63196 -29.17202 -26.23396 -25.58626 -23.38241 -22.97427 -22.73806 -22.36437 -21.14776 -20.80601 -19.77081 -18.91391 -18.04674 -17.68041 -17.34520 -17.11791 -16.85282 -16.49026 -16.02334 -15.81849 -15.40447 -15.11529 -14.96274 -14.82056 -14.72934 -14.43526 -13.96850 -13.87625 -13.59168 -13.31022 -13.01361 -12.85028 -12.72465 -12.60442 -12.27661 -12.13344 -12.02246 -11.78645 -11.67201 -11.33468 -11.24348 -11.01246 -10.96291 -10.80836 -10.56839 -9.85041 -9.28749 -7.99245 -5.33664 0.52935 1.38455 1.46034 1.52391 1.76471 1.79601 1.84955 2.26259 2.51936 2.97827 3.17594 3.26275 3.32957 3.41423 3.52083 3.72607 3.93151 4.04182 4.08960 4.14283 4.29292 4.44171 4.48683 4.55876 4.64226 4.69439 4.84011 4.85742 4.92034 4.94568 5.06698 5.09446 5.16341 5.27635 5.50866 5.65607 5.68315 5.79270 6.23451 6.35158 6.69483 6.92352 7.10442 7.42654 7.84488 8.05299 9.22077 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.014327 B = 0.004330 C = 0.003501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1953.943387 B = 6464.332917 C = 7995.061595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.062 4.062 3 Si 0.954 3.046 4 H -0.291 1.291 5 H -0.295 1.295 6 H -0.238 1.238 7 C -0.234 4.234 8 H 0.057 0.943 9 N -0.752 5.752 10 C 0.154 3.846 11 C 0.181 3.819 12 H 0.068 0.932 13 N -0.715 5.715 14 C 0.495 3.505 15 O -0.545 6.545 16 C -0.128 4.128 17 C -0.104 4.104 18 H 0.132 0.868 19 C -0.140 4.140 20 C 0.534 3.466 21 O -0.525 6.525 22 N -0.680 5.680 23 C 0.523 3.477 24 O -0.483 6.483 25 C -0.167 4.167 26 C -0.160 4.160 27 C -0.193 4.193 28 H 0.257 0.743 29 H 0.367 0.633 30 H 0.036 0.964 31 H 0.042 0.958 32 H 0.411 0.589 33 H 0.121 0.879 34 H 0.142 0.858 35 H 0.149 0.851 36 H 0.153 0.847 37 H 0.415 0.585 38 H 0.116 0.884 39 H 0.094 0.906 40 H 0.100 0.900 41 H 0.087 0.913 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.238 1.690 9.058 23.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.254 4.254 3 Si 0.781 3.219 4 H -0.218 1.218 5 H -0.221 1.221 6 H -0.162 1.162 7 C -0.365 4.365 8 H 0.075 0.925 9 N -0.399 5.399 10 C 0.028 3.972 11 C 0.075 3.925 12 H 0.086 0.914 13 N -0.368 5.368 14 C 0.282 3.718 15 O -0.422 6.422 16 C -0.167 4.167 17 C -0.126 4.126 18 H 0.150 0.850 19 C -0.179 4.179 20 C 0.325 3.675 21 O -0.400 6.400 22 N -0.345 5.345 23 C 0.311 3.689 24 O -0.353 6.353 25 C -0.187 4.187 26 C -0.197 4.197 27 C -0.230 4.230 28 H 0.066 0.934 29 H 0.201 0.799 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.247 0.753 33 H 0.139 0.861 34 H 0.160 0.840 35 H 0.167 0.833 36 H 0.170 0.830 37 H 0.255 0.745 38 H 0.134 0.866 39 H 0.112 0.888 40 H 0.119 0.881 41 H 0.105 0.895 42 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 21.796 1.394 8.367 23.389 hybrid contribution 0.160 0.375 -0.088 0.417 sum 21.956 1.769 8.279 23.532 Atomic orbital electron populations 1.69892 1.07284 1.26697 1.59618 1.25505 0.96041 1.01308 1.02538 0.85427 0.79190 0.79539 0.77728 1.21778 1.22141 1.16157 1.19012 0.82589 0.93490 1.41392 0.92515 1.42596 1.02352 1.03889 1.91036 1.20971 0.88607 0.87974 0.99661 1.20392 0.92839 0.89342 0.89938 0.91365 1.45998 1.27241 1.43027 1.20525 1.21161 0.80263 0.80612 0.89777 1.90738 1.49820 1.66807 1.34836 1.21750 0.98247 0.99520 0.97223 1.21839 0.92301 0.95834 1.02624 0.85004 1.22691 0.93569 1.02485 0.99167 1.21231 0.89031 0.77975 0.79296 1.90813 1.59559 1.60334 1.29317 1.44886 1.23880 1.32755 1.32994 1.21110 0.85104 0.84241 0.78494 1.90883 1.77569 1.30401 1.36450 1.22610 0.94044 0.98469 1.03539 1.22910 1.03336 1.02529 0.90937 1.23339 0.93559 1.04243 1.01826 0.93381 0.79927 0.94611 0.93975 0.75292 0.86064 0.83974 0.83321 0.82973 0.74519 0.86623 0.88804 0.88124 0.89479 0.87411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.28 13.97 21.65 0.30 -60.97 16 2 C -0.06 -3.53 5.50 84.86 0.47 -3.06 16 3 Si 0.95 42.73 27.74 68.60 1.90 44.63 16 4 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 5 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 6 H -0.24 -8.92 6.52 99.48 0.65 -8.27 16 7 C -0.23 -12.69 10.47 84.03 0.88 -11.81 16 8 H 0.06 3.40 8.06 -2.91 -0.02 3.38 16 9 N -0.75 -32.37 5.24 -343.45 -1.80 -34.17 16 10 C 0.15 5.35 5.80 86.38 0.50 5.85 16 11 C 0.18 5.25 2.59 44.99 0.12 5.37 16 12 H 0.07 2.32 7.58 -2.38 -0.02 2.30 16 13 N -0.72 -17.32 3.05 -442.55 -1.35 -18.68 16 14 C 0.49 11.46 6.34 87.66 0.56 12.02 16 15 O -0.54 -16.66 10.65 18.97 0.20 -16.46 16 16 C -0.13 -1.57 5.04 29.85 0.15 -1.42 16 17 C -0.10 -1.24 2.72 -10.93 -0.03 -1.27 16 18 H 0.13 1.68 8.03 -2.38 -0.02 1.66 16 19 C -0.14 -0.85 6.67 30.46 0.20 -0.64 16 20 C 0.53 7.10 8.55 87.99 0.75 7.86 16 21 O -0.53 -10.89 18.02 -2.86 -0.05 -10.94 16 22 N -0.68 -9.38 5.48 -427.80 -2.34 -11.72 16 23 C 0.52 9.42 7.71 87.99 0.68 10.10 16 24 O -0.48 -13.21 14.84 19.12 0.28 -12.93 16 25 C -0.17 -4.30 5.70 -10.80 -0.06 -4.36 16 26 C -0.16 -3.62 9.74 30.62 0.30 -3.32 16 27 C -0.19 -5.18 9.82 30.62 0.30 -4.88 16 28 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 29 H 0.37 15.08 5.20 -92.71 -0.48 14.59 16 30 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.04 1.42 8.14 -2.39 -0.02 1.41 16 32 H 0.41 8.77 8.60 -92.71 -0.80 7.97 16 33 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.14 1.07 8.14 -2.38 -0.02 1.05 16 35 H 0.15 0.32 8.14 -2.38 -0.02 0.30 16 36 H 0.15 0.20 7.74 -2.39 -0.02 0.18 16 37 H 0.42 5.09 8.96 -92.71 -0.83 4.26 16 38 H 0.12 2.79 8.11 -2.39 -0.02 2.77 16 39 H 0.09 2.01 6.67 -2.39 -0.02 2.00 16 40 H 0.10 1.98 8.14 -2.38 -0.02 1.96 16 41 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 42 H 0.11 3.46 4.42 -2.39 -0.01 3.45 16 Total: -1.00 -78.98 345.05 0.88 -78.10 By element: Atomic # 1 Polarization: 33.78 SS G_CDS: -1.08 Total: 32.70 kcal Atomic # 6 Polarization: 5.63 SS G_CDS: 4.81 Total: 10.44 kcal Atomic # 7 Polarization: -120.35 SS G_CDS: -5.19 Total: -125.54 kcal Atomic # 8 Polarization: -40.76 SS G_CDS: 0.43 Total: -40.33 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 1.90 Total: 44.63 kcal Total: -78.98 0.88 -78.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498879160.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.571 kcal (2) G-P(sol) polarization free energy of solvation -78.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds