Wall clock time and date at job start Fri Apr 10 2020 18:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50699 * 109.46896 * 2 1 4 4 O 1.21278 * 120.00369 * 0.02562 * 3 2 1 5 5 N 1.34780 * 119.99685 * 180.02562 * 3 2 1 6 6 C 1.46491 * 119.99920 * 175.06427 * 5 3 2 7 7 C 1.50700 * 109.47359 * 305.81818 * 6 5 3 8 8 H 1.07998 * 119.99959 * 119.99928 * 7 6 5 9 9 C 1.37874 * 119.99729 * 300.00017 * 7 6 5 10 10 N 1.31513 * 120.00239 * 359.97438 * 9 7 6 11 11 Si 1.86807 * 120.00053 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.46999 * 89.99952 * 11 9 7 13 13 H 1.48493 * 109.47472 * 210.00072 * 11 9 7 14 14 H 1.48498 * 109.47057 * 330.00236 * 11 9 7 15 15 C 1.50702 * 109.47202 * 185.81697 * 6 5 3 16 16 C 1.38235 * 119.99915 * 196.88241 * 15 6 5 17 17 C 1.38236 * 119.99579 * 179.76388 * 16 15 6 18 18 C 1.38241 * 120.00269 * 0.51325 * 17 16 15 19 19 C 1.38229 * 119.99621 * 359.73835 * 18 17 16 20 20 C 1.38237 * 119.99626 * 17.15575 * 15 6 5 21 21 C 1.50707 * 109.47225 * 65.81718 * 6 5 3 22 22 C 1.38233 * 119.99718 * 206.12876 * 21 6 5 23 23 C 1.38236 * 119.99557 * 179.76504 * 22 21 6 24 24 C 1.38237 * 119.99912 * 0.51268 * 23 22 21 25 25 C 1.38237 * 120.00215 * 359.73843 * 24 23 22 26 26 C 1.38227 * 119.99858 * 26.40621 * 21 6 5 27 27 H 1.08999 * 109.47299 * 59.99889 * 1 2 3 28 28 H 1.08997 * 109.47433 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47239 * 300.00087 * 1 2 3 30 30 H 1.08999 * 109.46740 * 239.99974 * 2 1 3 31 31 H 1.08995 * 109.46827 * 120.00099 * 2 1 3 32 32 H 0.97003 * 119.99971 * 355.06215 * 5 3 2 33 33 H 0.96999 * 119.99840 * 179.97438 * 10 9 7 34 34 H 1.07994 * 120.00361 * 359.97438 * 16 15 6 35 35 H 1.08006 * 119.99947 * 180.22950 * 17 16 15 36 36 H 1.07998 * 119.99988 * 179.72711 * 18 17 16 37 37 H 1.07998 * 120.00145 * 179.97438 * 19 18 17 38 38 H 1.07991 * 120.00028 * 0.02562 * 20 15 6 39 39 H 1.07995 * 120.00467 * 0.02562 * 22 21 6 40 40 H 1.07998 * 120.00201 * 180.22702 * 23 22 21 41 41 H 1.08005 * 119.99913 * 179.72463 * 24 23 22 42 42 H 1.07995 * 120.00079 * 179.97438 * 25 24 23 43 43 H 1.08001 * 120.00108 * 0.02562 * 26 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3427 0.0005 5 7 3.3574 1.6671 -0.0005 6 6 3.8465 3.0436 -0.1097 7 6 3.2483 3.6941 -1.3304 8 1 2.6389 4.5796 -1.2264 9 6 3.4789 3.1586 -2.5797 10 7 4.2214 2.0805 -2.7063 11 14 2.7367 3.9644 -4.0929 12 1 3.6807 4.9790 -4.6266 13 1 2.4821 2.9317 -5.1291 14 1 1.4575 4.6231 -3.7257 15 6 5.3487 3.0349 -0.2304 16 6 6.0675 4.1925 0.0022 17 6 7.4458 4.1833 -0.1038 18 6 8.1044 3.0190 -0.4527 19 6 7.3852 1.8628 -0.6904 20 6 6.0073 1.8706 -0.5793 21 6 3.4459 3.8181 1.1195 22 6 3.2938 5.1904 1.0526 23 6 2.9216 5.9002 2.1789 24 6 2.7117 5.2389 3.3746 25 6 2.8688 3.8672 3.4427 26 6 3.2360 3.1569 2.3151 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 3.9872 0.9328 0.0714 33 1 4.3833 1.7036 -3.5853 34 1 5.5527 5.1032 0.2701 35 1 8.0077 5.0868 0.0816 36 1 9.1809 3.0129 -0.5398 37 1 7.8996 0.9533 -0.9635 38 1 5.4453 0.9675 -0.7658 39 1 3.4617 5.7075 0.1195 40 1 2.7992 6.9719 2.1259 41 1 2.4252 5.7940 4.2557 42 1 2.7053 3.3506 4.3769 43 1 3.3596 2.0853 2.3685 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000005950685.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:00:12 Heat of formation + Delta-G solvation = 10.480286 kcal Electronic energy + Delta-G solvation = -26500.652114 eV Core-core repulsion = 23089.265862 eV Total energy + Delta-G solvation = -3411.386252 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 309.147 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.30093 -39.43935 -39.20944 -36.35122 -33.93691 -33.47838 -32.49319 -31.47084 -31.24596 -30.81956 -28.24627 -25.87706 -24.52428 -23.37672 -22.98427 -22.60532 -21.15651 -20.57704 -18.42155 -18.19101 -17.85186 -16.92099 -16.52744 -16.39251 -16.06668 -15.73080 -15.44811 -15.14075 -14.93224 -14.55064 -14.36903 -14.18541 -14.04991 -13.80482 -13.56122 -13.31180 -13.10213 -12.92856 -12.87197 -12.80644 -12.50267 -12.24365 -12.14089 -11.92549 -11.78609 -11.62877 -11.46032 -11.21305 -10.72651 -10.24459 -9.60517 -9.55383 -9.40737 -9.21971 -9.13874 -8.00225 -6.13822 0.70023 0.73252 0.85044 0.92575 1.31781 1.35384 1.44684 2.27926 2.41764 2.83823 3.15277 3.28604 3.33163 4.15017 4.19633 4.26782 4.30111 4.35996 4.36334 4.38319 4.40443 4.48114 4.54859 4.66150 4.85651 4.86870 4.92255 5.01608 5.03285 5.10720 5.15852 5.30692 5.32339 5.39193 5.45475 5.48232 5.74192 5.76692 5.77729 5.85917 5.89616 5.94534 6.11197 6.19734 6.36087 6.43953 6.51902 6.81282 7.26369 7.50276 8.00506 8.92411 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.008940 B = 0.008542 C = 0.006360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3131.365109 B = 3276.957780 C = 4401.113689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.141 4.141 3 C 0.502 3.498 4 O -0.579 6.579 5 N -0.694 5.694 6 C 0.362 3.638 7 C -0.498 4.498 8 H 0.038 0.962 9 C 0.046 3.954 10 N -0.870 5.870 11 Si 0.924 3.076 12 H -0.278 1.278 13 H -0.283 1.283 14 H -0.290 1.290 15 C -0.037 4.037 16 C -0.138 4.138 17 C -0.138 4.138 18 C -0.143 4.143 19 C -0.138 4.138 20 C -0.085 4.085 21 C -0.050 4.050 22 C -0.128 4.128 23 C -0.131 4.131 24 C -0.140 4.140 25 C -0.128 4.128 26 C -0.133 4.133 27 H 0.033 0.967 28 H 0.085 0.915 29 H 0.048 0.952 30 H 0.091 0.909 31 H 0.110 0.890 32 H 0.387 0.613 33 H 0.258 0.742 34 H 0.106 0.894 35 H 0.131 0.869 36 H 0.138 0.862 37 H 0.131 0.869 38 H 0.116 0.884 39 H 0.106 0.894 40 H 0.135 0.865 41 H 0.145 0.855 42 H 0.140 0.860 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.601 -3.161 8.803 10.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.181 4.181 3 C 0.289 3.711 4 O -0.459 6.459 5 N -0.343 5.343 6 C 0.278 3.722 7 C -0.537 4.537 8 H 0.056 0.944 9 C -0.157 4.157 10 N -0.506 5.506 11 Si 0.753 3.247 12 H -0.204 1.204 13 H -0.209 1.209 14 H -0.216 1.216 15 C -0.038 4.038 16 C -0.156 4.156 17 C -0.156 4.156 18 C -0.161 4.161 19 C -0.156 4.156 20 C -0.104 4.104 21 C -0.051 4.051 22 C -0.146 4.146 23 C -0.149 4.149 24 C -0.157 4.157 25 C -0.146 4.146 26 C -0.151 4.151 27 H 0.052 0.948 28 H 0.104 0.896 29 H 0.067 0.933 30 H 0.109 0.891 31 H 0.128 0.872 32 H 0.223 0.777 33 H 0.067 0.933 34 H 0.124 0.876 35 H 0.149 0.851 36 H 0.156 0.844 37 H 0.149 0.851 38 H 0.134 0.866 39 H 0.124 0.876 40 H 0.153 0.847 41 H 0.163 0.837 42 H 0.157 0.843 43 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 3.126 -2.650 8.636 9.559 hybrid contribution -0.397 0.263 -1.652 1.719 sum 2.729 -2.387 6.985 7.870 Atomic orbital electron populations 1.21420 0.93557 1.01971 1.01313 1.21661 0.98196 0.93362 1.04839 1.20947 0.82681 0.91818 0.75659 1.90594 1.56228 1.47986 1.51046 1.46403 1.06207 1.09067 1.72619 1.15540 0.87458 0.79714 0.89537 1.21123 1.30107 1.11699 0.90741 0.94368 1.25238 0.95041 0.95572 0.99876 1.69965 1.36868 1.20510 1.23293 0.86089 0.78592 0.78706 0.81320 1.20397 1.20878 1.21612 1.19905 0.94489 0.93614 0.95787 1.21025 0.94687 0.97758 1.02129 1.21187 0.93773 0.98952 1.01659 1.21210 1.00262 0.92863 1.01733 1.21280 0.93981 0.98968 1.01329 1.20844 0.93970 0.98039 0.97517 1.20351 0.95589 0.94274 0.94891 1.21126 1.00681 0.94439 0.98377 1.21357 1.00156 1.00444 0.92965 1.21303 1.01660 0.94608 0.98161 1.21327 1.00032 0.94891 0.98319 1.21034 1.01412 0.99685 0.92987 0.94810 0.89626 0.93330 0.89093 0.87184 0.77735 0.93298 0.87597 0.85074 0.84427 0.85112 0.86602 0.87572 0.84668 0.83693 0.84259 0.87073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.79 9.20 71.98 0.66 -3.13 16 2 C -0.14 -4.46 6.42 29.85 0.19 -4.27 16 3 C 0.50 21.61 6.63 87.66 0.58 22.19 16 4 O -0.58 -30.04 14.14 -3.02 -0.04 -30.08 16 5 N -0.69 -29.25 3.16 -433.22 -1.37 -30.62 16 6 C 0.36 16.63 0.38 1.37 0.00 16.63 16 7 C -0.50 -26.58 5.82 25.60 0.15 -26.43 16 8 H 0.04 2.22 6.27 -2.91 -0.02 2.20 16 9 C 0.05 2.43 5.23 84.65 0.44 2.87 16 10 N -0.87 -44.19 10.23 21.45 0.22 -43.97 16 11 Si 0.92 44.69 29.54 68.60 2.03 46.72 16 12 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 13 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 14 H -0.29 -14.74 7.11 99.48 0.71 -14.04 16 15 C -0.04 -1.60 4.15 -19.86 -0.08 -1.68 16 16 C -0.14 -5.67 9.11 22.27 0.20 -5.46 16 17 C -0.14 -4.81 10.05 22.27 0.22 -4.58 16 18 C -0.14 -4.60 10.05 22.27 0.22 -4.38 16 19 C -0.14 -4.74 10.05 22.27 0.22 -4.51 16 20 C -0.09 -3.40 7.39 22.27 0.16 -3.23 16 21 C -0.05 -2.17 3.33 -19.87 -0.07 -2.24 16 22 C -0.13 -5.39 7.13 22.27 0.16 -5.24 16 23 C -0.13 -4.56 10.05 22.27 0.22 -4.34 16 24 C -0.14 -4.33 10.05 22.27 0.22 -4.10 16 25 C -0.13 -4.19 10.05 22.27 0.22 -3.96 16 26 C -0.13 -5.16 8.78 22.27 0.20 -4.97 16 27 H 0.03 1.17 8.10 -2.39 -0.02 1.15 16 28 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.05 1.53 8.10 -2.39 -0.02 1.51 16 30 H 0.09 2.78 8.14 -2.39 -0.02 2.76 16 31 H 0.11 2.73 8.14 -2.39 -0.02 2.71 16 32 H 0.39 14.65 6.15 -92.71 -0.57 14.08 16 33 H 0.26 12.89 8.31 -92.71 -0.77 12.12 16 34 H 0.11 4.42 5.88 -2.91 -0.02 4.40 16 35 H 0.13 3.79 8.06 -2.91 -0.02 3.76 16 36 H 0.14 3.46 8.06 -2.91 -0.02 3.43 16 37 H 0.13 3.74 8.06 -2.91 -0.02 3.72 16 38 H 0.12 4.63 5.79 -2.91 -0.02 4.62 16 39 H 0.11 4.77 6.45 -2.91 -0.02 4.75 16 40 H 0.14 3.87 8.06 -2.91 -0.02 3.85 16 41 H 0.15 3.38 8.06 -2.91 -0.02 3.36 16 42 H 0.14 3.60 8.06 -2.91 -0.02 3.57 16 43 H 0.11 4.11 7.20 -2.91 -0.02 4.09 16 Total: -1.00 -65.17 347.27 5.22 -59.95 By element: Atomic # 1 Polarization: 38.40 SS G_CDS: 0.45 Total: 38.85 kcal Atomic # 6 Polarization: -44.78 SS G_CDS: 3.94 Total: -40.83 kcal Atomic # 7 Polarization: -73.44 SS G_CDS: -1.15 Total: -74.60 kcal Atomic # 8 Polarization: -30.04 SS G_CDS: -0.04 Total: -30.08 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -65.17 5.22 -59.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005950685.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.428 kcal (2) G-P(sol) polarization free energy of solvation -65.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds