Wall clock time and date at job start Fri Apr 10 2020 18:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46491 * 109.47289 * 2 1 4 4 C 1.46500 * 119.99801 * 269.99810 * 3 2 1 5 5 C 1.50703 * 109.47362 * 270.00009 * 4 3 2 6 6 H 1.08008 * 119.99752 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00291 * 180.02562 * 5 4 3 8 8 N 1.31515 * 119.99901 * 180.02562 * 7 5 4 9 9 Si 1.86802 * 120.00126 * 359.97438 * 7 5 4 10 10 H 1.48492 * 109.47136 * 90.00517 * 9 7 5 11 11 H 1.48496 * 109.47228 * 210.00562 * 9 7 5 12 12 H 1.48507 * 109.46990 * 330.00243 * 9 7 5 13 13 C 1.34776 * 120.00452 * 90.00236 * 3 2 1 14 14 O 1.21274 * 120.00467 * 180.02562 * 13 3 2 15 15 C 1.50704 * 119.99643 * 359.97438 * 13 3 2 16 16 O 1.45196 * 109.47016 * 180.02562 * 15 13 3 17 17 C 1.34234 * 116.99938 * 179.97438 * 16 15 13 18 18 O 1.20822 * 119.99973 * 0.02562 * 17 16 15 19 19 C 1.50700 * 120.00068 * 179.97438 * 17 16 15 20 20 N 1.46497 * 109.47128 * 180.02562 * 19 17 16 21 21 C 1.34943 * 126.03868 * 125.00304 * 20 19 17 22 22 C 1.35318 * 107.74756 * 179.97438 * 21 20 19 23 23 C 1.50697 * 126.04116 * 179.97438 * 22 21 20 24 24 C 1.39869 * 107.91874 * 359.97438 * 22 21 20 25 25 N 1.30838 * 108.20133 * 359.73987 * 24 22 21 26 26 H 1.09002 * 109.47121 * 60.00199 * 1 2 3 27 27 H 1.09002 * 109.47127 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47522 * 300.00160 * 1 2 3 29 29 H 1.09005 * 109.47240 * 239.99518 * 2 1 3 30 30 H 1.09003 * 109.46951 * 120.00329 * 2 1 3 31 31 H 1.08996 * 109.47402 * 29.99639 * 4 3 2 32 32 H 1.08999 * 109.47280 * 150.00267 * 4 3 2 33 33 H 0.97001 * 119.99740 * 179.97438 * 8 7 5 34 34 H 1.08996 * 109.46943 * 60.00331 * 15 13 3 35 35 H 1.08999 * 109.47285 * 300.00471 * 15 13 3 36 36 H 1.09004 * 109.46932 * 300.00373 * 19 17 16 37 37 H 1.08997 * 109.47392 * 59.99712 * 19 17 16 38 38 H 1.08004 * 126.12840 * 359.94912 * 21 20 19 39 39 H 1.08997 * 109.47114 * 89.99851 * 23 22 21 40 40 H 1.08998 * 109.47187 * 210.00027 * 23 22 21 41 41 H 1.09001 * 109.47243 * 329.99817 * 23 22 21 42 42 H 1.07997 * 125.89826 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2625 2.0717 -1.2687 5 6 3.6858 1.8348 -1.7038 6 1 4.3429 1.2307 -1.0957 7 6 4.1495 2.3902 -2.8775 8 7 5.3914 2.1831 -3.2573 9 14 3.0132 3.4357 -3.9288 10 1 3.1160 4.8558 -3.5071 11 1 3.4068 3.3133 -5.3554 12 1 1.6136 2.9691 -3.7597 13 6 2.2430 2.0165 1.1671 14 8 2.6469 3.1600 1.1671 15 6 1.9913 1.3063 2.4723 16 8 2.3055 2.1960 3.5759 17 6 2.1335 1.7127 4.8163 18 8 1.7341 0.5834 4.9746 19 6 2.4396 2.5782 6.0114 20 7 2.1730 1.8262 7.2400 21 6 3.0462 1.6152 8.2470 22 6 2.4161 0.8797 9.1920 23 6 3.0130 0.4092 10.4934 24 6 1.1131 0.6331 8.7476 25 7 0.9643 1.2051 7.5803 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.5818 1.6875 -2.0284 32 1 2.0956 3.1409 -1.1385 33 1 5.7175 2.5735 -4.0832 34 1 2.6212 0.4186 2.5302 35 1 0.9433 1.0125 2.5299 36 1 3.4885 2.8736 5.9869 37 1 1.8109 3.4682 5.9861 38 1 4.0655 1.9696 8.2907 39 1 2.8374 1.1583 11.2654 40 1 2.5477 -0.5316 10.7874 41 1 4.0856 0.2606 10.3685 42 1 0.3584 0.0719 9.2786 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062573367.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:00:25 Heat of formation + Delta-G solvation = -28.913914 kcal Electronic energy + Delta-G solvation = -24907.716988 eV Core-core repulsion = 21083.773212 eV Total energy + Delta-G solvation = -3823.943776 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.152 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.58281 -40.53635 -39.10521 -36.58550 -35.47182 -34.09175 -32.80231 -31.88723 -30.52689 -29.83827 -28.74711 -27.04075 -25.85658 -23.09460 -22.78494 -21.96115 -20.82131 -20.45195 -18.76251 -18.08535 -17.32653 -17.09898 -16.79258 -16.50020 -16.13527 -15.38371 -15.25111 -14.68103 -14.46151 -14.10100 -13.83784 -13.60272 -13.48572 -13.37948 -13.17171 -12.87789 -12.68396 -12.48879 -12.41217 -12.23640 -12.17465 -11.88043 -11.50907 -11.07054 -10.97033 -10.89841 -10.69600 -10.65974 -10.55487 -10.21204 -9.69306 -9.60360 -9.18225 -8.63627 -8.61508 -7.87699 -6.13337 -4.12901 1.47261 1.92715 1.95039 2.49481 2.58357 3.09925 3.25979 3.31790 3.33774 3.64454 4.19858 4.35226 4.44851 4.53474 4.69642 4.71939 4.75634 5.01020 5.02652 5.09894 5.16956 5.19841 5.25770 5.43412 5.46000 5.52562 5.62397 5.73572 5.87660 5.89772 6.06678 6.16463 6.32113 6.38690 6.61139 6.64615 6.85245 7.19085 7.43674 7.51434 7.54531 8.05224 8.39907 8.75279 8.89700 9.46059 10.99871 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.028030 B = 0.002522 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.681379 B =11100.552937 C =11548.572054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.101 3.899 3 N -0.587 5.587 4 C 0.218 3.782 5 C -0.532 4.532 6 H 0.075 0.925 7 C 0.073 3.927 8 N -0.896 5.896 9 Si 0.877 3.123 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.266 1.266 13 C 0.510 3.490 14 O -0.518 6.518 15 C 0.053 3.947 16 O -0.328 6.328 17 C 0.446 3.554 18 O -0.482 6.482 19 C 0.149 3.851 20 N -0.370 5.370 21 C 0.056 3.944 22 C -0.239 4.239 23 C -0.071 4.071 24 C 0.048 3.952 25 N -0.269 5.269 26 H 0.062 0.938 27 H 0.065 0.935 28 H 0.051 0.949 29 H 0.091 0.909 30 H 0.067 0.933 31 H 0.034 0.966 32 H 0.038 0.962 33 H 0.265 0.735 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.142 0.858 37 H 0.131 0.869 38 H 0.176 0.824 39 H 0.060 0.940 40 H 0.063 0.937 41 H 0.060 0.940 42 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.688 -3.414 22.612 24.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.023 4.023 3 N -0.320 5.320 4 C 0.098 3.902 5 C -0.570 4.570 6 H 0.093 0.907 7 C -0.130 4.130 8 N -0.534 5.534 9 Si 0.703 3.297 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.190 1.190 13 C 0.295 3.705 14 O -0.394 6.394 15 C -0.024 4.024 16 O -0.243 6.243 17 C 0.285 3.715 18 O -0.368 6.368 19 C 0.025 3.975 20 N -0.154 5.154 21 C -0.088 4.088 22 C -0.250 4.250 23 C -0.130 4.130 24 C -0.139 4.139 25 N -0.089 5.089 26 H 0.081 0.919 27 H 0.084 0.916 28 H 0.070 0.930 29 H 0.109 0.891 30 H 0.086 0.914 31 H 0.052 0.948 32 H 0.056 0.944 33 H 0.075 0.925 34 H 0.116 0.884 35 H 0.115 0.885 36 H 0.159 0.841 37 H 0.148 0.852 38 H 0.193 0.807 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -8.220 -2.795 21.328 23.027 hybrid contribution 0.112 0.098 -0.157 0.216 sum -8.107 -2.697 21.171 22.831 Atomic orbital electron populations 1.22245 0.96421 1.01947 1.02343 1.21549 0.93704 0.83513 1.03518 1.47872 1.64111 1.13571 1.06452 1.19712 0.97569 0.93440 0.79483 1.21304 0.95226 1.33169 1.07296 0.90709 1.24855 0.95030 0.95771 0.97326 1.69894 1.15123 1.44819 1.23551 0.86845 0.81407 0.81609 0.79795 1.19843 1.21012 1.19050 1.19681 0.79458 0.87108 0.84267 1.90714 1.44372 1.17537 1.86737 1.22955 1.02941 0.92545 0.83947 1.86516 1.78666 1.45090 1.13994 1.23543 0.75728 0.87328 0.84874 1.90747 1.40399 1.19307 1.86298 1.20955 1.06002 0.92672 0.77847 1.47996 1.09740 1.43064 1.14590 1.22351 0.96775 1.00709 0.88964 1.20160 0.95550 1.08814 1.00485 1.20048 0.99972 1.00545 0.92386 1.23866 0.97048 0.99768 0.93236 1.77490 1.02828 1.13200 1.15360 0.91931 0.91637 0.93027 0.89108 0.91418 0.94831 0.94384 0.92487 0.88410 0.88509 0.84071 0.85175 0.80701 0.92113 0.91807 0.92117 0.80022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.14 10.24 37.16 0.38 -1.76 16 2 C 0.10 1.53 5.93 -4.05 -0.02 1.51 16 3 N -0.59 -11.78 2.46 -175.07 -0.43 -12.21 16 4 C 0.22 5.21 4.23 -5.19 -0.02 5.18 16 5 C -0.53 -15.01 9.94 -34.44 -0.34 -15.36 16 6 H 0.07 2.32 8.06 -52.48 -0.42 1.89 16 7 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 8 N -0.90 -27.30 13.96 55.43 0.77 -26.53 16 9 Si 0.88 21.25 27.47 -169.99 -4.67 16.58 16 10 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.27 -6.03 6.54 56.52 0.37 -5.66 16 13 C 0.51 10.35 7.75 -10.98 -0.09 10.27 16 14 O -0.52 -12.72 16.08 -14.10 -0.23 -12.95 16 15 C 0.05 0.84 4.50 36.01 0.16 1.00 16 16 O -0.33 -5.07 9.75 -45.92 -0.45 -5.52 16 17 C 0.45 5.99 7.99 36.01 0.29 6.28 16 18 O -0.48 -7.83 15.47 -18.75 -0.29 -8.12 16 19 C 0.15 1.36 7.10 -5.20 -0.04 1.33 16 20 N -0.37 -4.06 3.39 -62.55 -0.21 -4.27 16 21 C 0.06 0.49 11.36 -17.22 -0.20 0.29 16 22 C -0.24 -2.14 6.10 -105.05 -0.64 -2.78 16 23 C -0.07 -0.43 10.37 36.00 0.37 -0.06 16 24 C 0.05 0.50 11.96 -17.37 -0.21 0.30 16 25 N -0.27 -3.54 11.66 30.62 0.36 -3.18 16 26 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.05 0.62 7.22 -51.93 -0.37 0.25 16 29 H 0.09 1.42 8.07 -51.93 -0.42 1.00 16 30 H 0.07 0.88 6.44 -51.93 -0.33 0.55 16 31 H 0.03 0.76 7.13 -51.93 -0.37 0.39 16 32 H 0.04 0.97 6.85 -51.93 -0.36 0.61 16 33 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 34 H 0.10 1.42 7.39 -51.93 -0.38 1.03 16 35 H 0.10 1.33 7.18 -51.93 -0.37 0.96 16 36 H 0.14 0.79 8.07 -51.93 -0.42 0.37 16 37 H 0.13 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.18 0.89 8.06 -52.48 -0.42 0.47 16 39 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 42 H 0.18 1.35 8.06 -52.49 -0.42 0.93 16 LS Contribution 363.62 15.07 5.48 5.48 Total: -1.00 -38.16 363.62 -6.12 -44.27 By element: Atomic # 1 Polarization: 4.24 SS G_CDS: -6.00 Total: -1.76 kcal Atomic # 6 Polarization: 8.66 SS G_CDS: -0.45 Total: 8.21 kcal Atomic # 7 Polarization: -46.68 SS G_CDS: 0.49 Total: -46.19 kcal Atomic # 8 Polarization: -25.62 SS G_CDS: -0.96 Total: -26.58 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.67 Total: 16.58 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -38.16 -6.12 -44.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062573367.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.358 kcal (2) G-P(sol) polarization free energy of solvation -38.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds