Wall clock time and date at job start Fri Apr 10 2020 18:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46491 * 109.47289 * 2 1 4 4 C 1.46500 * 119.99801 * 269.99810 * 3 2 1 5 5 C 1.50703 * 109.47362 * 270.00009 * 4 3 2 6 6 H 1.08008 * 119.99752 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00291 * 180.02562 * 5 4 3 8 8 N 1.31515 * 119.99901 * 180.02562 * 7 5 4 9 9 Si 1.86802 * 120.00126 * 359.97438 * 7 5 4 10 10 H 1.48492 * 109.47136 * 90.00517 * 9 7 5 11 11 H 1.48496 * 109.47228 * 210.00562 * 9 7 5 12 12 H 1.48507 * 109.46990 * 330.00243 * 9 7 5 13 13 C 1.34776 * 120.00452 * 90.00236 * 3 2 1 14 14 O 1.21274 * 120.00467 * 180.02562 * 13 3 2 15 15 C 1.50704 * 119.99643 * 359.97438 * 13 3 2 16 16 O 1.45196 * 109.47016 * 180.02562 * 15 13 3 17 17 C 1.34234 * 116.99938 * 179.97438 * 16 15 13 18 18 O 1.20822 * 119.99973 * 0.02562 * 17 16 15 19 19 C 1.50700 * 120.00068 * 179.97438 * 17 16 15 20 20 N 1.46497 * 109.47128 * 180.02562 * 19 17 16 21 21 C 1.34943 * 126.03868 * 125.00304 * 20 19 17 22 22 C 1.35318 * 107.74756 * 179.97438 * 21 20 19 23 23 C 1.50697 * 126.04116 * 179.97438 * 22 21 20 24 24 C 1.39869 * 107.91874 * 359.97438 * 22 21 20 25 25 N 1.30838 * 108.20133 * 359.73987 * 24 22 21 26 26 H 1.09002 * 109.47121 * 60.00199 * 1 2 3 27 27 H 1.09002 * 109.47127 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47522 * 300.00160 * 1 2 3 29 29 H 1.09005 * 109.47240 * 239.99518 * 2 1 3 30 30 H 1.09003 * 109.46951 * 120.00329 * 2 1 3 31 31 H 1.08996 * 109.47402 * 29.99639 * 4 3 2 32 32 H 1.08999 * 109.47280 * 150.00267 * 4 3 2 33 33 H 0.97001 * 119.99740 * 179.97438 * 8 7 5 34 34 H 1.08996 * 109.46943 * 60.00331 * 15 13 3 35 35 H 1.08999 * 109.47285 * 300.00471 * 15 13 3 36 36 H 1.09004 * 109.46932 * 300.00373 * 19 17 16 37 37 H 1.08997 * 109.47392 * 59.99712 * 19 17 16 38 38 H 1.08004 * 126.12840 * 359.94912 * 21 20 19 39 39 H 1.08997 * 109.47114 * 89.99851 * 23 22 21 40 40 H 1.08998 * 109.47187 * 210.00027 * 23 22 21 41 41 H 1.09001 * 109.47243 * 329.99817 * 23 22 21 42 42 H 1.07997 * 125.89826 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2625 2.0717 -1.2687 5 6 3.6858 1.8348 -1.7038 6 1 4.3429 1.2307 -1.0957 7 6 4.1495 2.3902 -2.8775 8 7 5.3914 2.1831 -3.2573 9 14 3.0132 3.4357 -3.9288 10 1 3.1160 4.8558 -3.5071 11 1 3.4068 3.3133 -5.3554 12 1 1.6136 2.9691 -3.7597 13 6 2.2430 2.0165 1.1671 14 8 2.6469 3.1600 1.1671 15 6 1.9913 1.3063 2.4723 16 8 2.3055 2.1960 3.5759 17 6 2.1335 1.7127 4.8163 18 8 1.7341 0.5834 4.9746 19 6 2.4396 2.5782 6.0114 20 7 2.1730 1.8262 7.2400 21 6 3.0462 1.6152 8.2470 22 6 2.4161 0.8797 9.1920 23 6 3.0130 0.4092 10.4934 24 6 1.1131 0.6331 8.7476 25 7 0.9643 1.2051 7.5803 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.5818 1.6875 -2.0284 32 1 2.0956 3.1409 -1.1385 33 1 5.7175 2.5735 -4.0832 34 1 2.6212 0.4186 2.5302 35 1 0.9433 1.0125 2.5299 36 1 3.4885 2.8736 5.9869 37 1 1.8109 3.4682 5.9861 38 1 4.0655 1.9696 8.2907 39 1 2.8374 1.1583 11.2654 40 1 2.5477 -0.5316 10.7874 41 1 4.0856 0.2606 10.3685 42 1 0.3584 0.0719 9.2786 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062573367.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:00:25 Heat of formation + Delta-G solvation = -54.311257 kcal Electronic energy + Delta-G solvation = -24908.818300 eV Core-core repulsion = 21083.773212 eV Total energy + Delta-G solvation = -3825.045087 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.152 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.36112 -41.64864 -40.61430 -37.77922 -37.05779 -34.91153 -34.80913 -32.53971 -32.10290 -31.01860 -29.82633 -28.55611 -26.56210 -24.57317 -24.22999 -23.12205 -21.60802 -21.21517 -20.28039 -19.15909 -19.13738 -18.33847 -18.07068 -17.58515 -17.46502 -16.80739 -16.46268 -16.09443 -15.54168 -15.27789 -14.88690 -14.81641 -14.65925 -14.38548 -14.14763 -13.96360 -13.85284 -13.77589 -13.54887 -13.42685 -13.21202 -13.11903 -12.69428 -12.60075 -12.45285 -12.19570 -12.04301 -11.94539 -11.84831 -11.75734 -11.43998 -10.85787 -10.83216 -10.46048 -9.56628 -9.27746 -8.35082 -6.40843 0.66419 0.92337 1.16776 1.33274 1.37127 1.45212 1.52017 1.60707 1.89808 2.27468 2.30379 2.98981 3.32112 3.41848 3.62217 3.85135 3.89227 3.97041 4.08986 4.09366 4.15464 4.32268 4.49496 4.54169 4.58941 4.73350 4.83180 4.90279 4.91504 4.95377 5.04461 5.10224 5.27538 5.31928 5.33056 5.42812 5.52730 5.71040 6.03482 6.19513 6.42134 6.52952 6.60527 6.72840 7.11777 7.26173 8.81657 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.028030 B = 0.002522 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.681379 B =11100.552937 C =11548.572054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.093 3.907 3 N -0.592 5.592 4 C 0.226 3.774 5 C -0.538 4.538 6 H 0.030 0.970 7 C 0.011 3.989 8 N -0.944 5.944 9 Si 0.948 3.052 10 H -0.275 1.275 11 H -0.276 1.276 12 H -0.237 1.237 13 C 0.503 3.497 14 O -0.571 6.571 15 C 0.064 3.936 16 O -0.342 6.342 17 C 0.447 3.553 18 O -0.513 6.513 19 C 0.149 3.851 20 N -0.382 5.382 21 C 0.056 3.944 22 C -0.251 4.251 23 C -0.068 4.068 24 C 0.040 3.960 25 N -0.323 5.323 26 H 0.054 0.946 27 H 0.095 0.905 28 H 0.057 0.943 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.055 0.945 32 H 0.023 0.977 33 H 0.269 0.731 34 H 0.111 0.889 35 H 0.121 0.879 36 H 0.181 0.819 37 H 0.150 0.850 38 H 0.212 0.788 39 H 0.069 0.931 40 H 0.067 0.933 41 H 0.070 0.930 42 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.021 -3.545 23.759 25.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.029 4.029 3 N -0.324 5.324 4 C 0.104 3.896 5 C -0.577 4.577 6 H 0.048 0.952 7 C -0.187 4.187 8 N -0.584 5.584 9 Si 0.770 3.230 10 H -0.201 1.201 11 H -0.201 1.201 12 H -0.160 1.160 13 C 0.290 3.710 14 O -0.450 6.450 15 C -0.013 4.013 16 O -0.258 6.258 17 C 0.289 3.711 18 O -0.400 6.400 19 C 0.027 3.973 20 N -0.166 5.166 21 C -0.088 4.088 22 C -0.262 4.262 23 C -0.126 4.126 24 C -0.147 4.147 25 N -0.143 5.143 26 H 0.073 0.927 27 H 0.114 0.886 28 H 0.076 0.924 29 H 0.101 0.899 30 H 0.109 0.891 31 H 0.073 0.927 32 H 0.041 0.959 33 H 0.078 0.922 34 H 0.129 0.871 35 H 0.139 0.861 36 H 0.198 0.802 37 H 0.167 0.833 38 H 0.228 0.772 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.089 0.911 42 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -9.585 -2.980 22.505 24.642 hybrid contribution 0.611 0.060 -0.408 0.737 sum -8.974 -2.919 22.097 24.028 Atomic orbital electron populations 1.22179 0.93748 1.03890 1.02258 1.21875 0.95830 0.80834 1.04356 1.47963 1.63816 1.15286 1.05357 1.19393 0.95139 0.93208 0.81832 1.21526 0.96946 1.32323 1.06861 0.95212 1.25849 0.96740 0.97167 0.98933 1.70046 1.17412 1.46427 1.24473 0.85720 0.80483 0.79040 0.77753 1.20092 1.20073 1.15982 1.20448 0.78137 0.86678 0.85727 1.90675 1.46760 1.19924 1.87680 1.22780 1.04575 0.91933 0.81974 1.86529 1.79023 1.45446 1.14759 1.24394 0.74441 0.87435 0.84804 1.90729 1.41972 1.20860 1.86439 1.21319 1.08687 0.91845 0.75462 1.48163 1.09631 1.43461 1.15298 1.23022 0.97858 0.99814 0.88074 1.20586 0.95112 1.08782 1.01695 1.20087 1.00392 1.00930 0.91165 1.24336 0.98342 0.99249 0.92794 1.77409 1.04708 1.15210 1.16930 0.92689 0.88642 0.92441 0.89879 0.89098 0.92666 0.95939 0.92217 0.87083 0.86138 0.80229 0.83274 0.77186 0.91197 0.91373 0.91121 0.78320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.61 10.24 71.98 0.74 -2.88 16 2 C 0.09 2.68 5.93 86.38 0.51 3.20 16 3 N -0.59 -23.61 2.46 -826.18 -2.03 -25.64 16 4 C 0.23 10.78 4.23 85.63 0.36 11.15 16 5 C -0.54 -31.23 9.94 25.60 0.25 -30.98 16 6 H 0.03 1.93 8.06 -2.91 -0.02 1.91 16 7 C 0.01 0.66 5.47 84.65 0.46 1.13 16 8 N -0.94 -59.13 13.96 21.45 0.30 -58.84 16 9 Si 0.95 43.75 27.47 68.60 1.88 45.63 16 10 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 11 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 12 H -0.24 -9.74 6.54 99.48 0.65 -9.09 16 13 C 0.50 20.46 7.75 87.66 0.68 21.14 16 14 O -0.57 -28.68 16.08 15.79 0.25 -28.43 16 15 C 0.06 1.95 4.50 71.24 0.32 2.27 16 16 O -0.34 -10.31 9.75 -45.10 -0.44 -10.75 16 17 C 0.45 11.51 7.99 71.24 0.57 12.08 16 18 O -0.51 -16.22 15.47 21.98 0.34 -15.88 16 19 C 0.15 2.44 7.10 85.63 0.61 3.05 16 20 N -0.38 -7.75 3.39 -351.80 -1.19 -8.95 16 21 C 0.06 0.85 11.36 83.54 0.95 1.80 16 22 C -0.25 -4.06 6.10 -20.14 -0.12 -4.18 16 23 C -0.07 -0.66 10.37 71.23 0.74 0.07 16 24 C 0.04 0.80 11.96 85.24 1.02 1.81 16 25 N -0.32 -8.28 11.66 -57.03 -0.67 -8.95 16 26 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.06 1.22 7.22 -2.39 -0.02 1.20 16 29 H 0.08 2.53 8.07 -2.38 -0.02 2.51 16 30 H 0.09 2.19 6.44 -2.39 -0.02 2.17 16 31 H 0.06 2.40 7.13 -2.39 -0.02 2.38 16 32 H 0.02 1.15 6.85 -2.39 -0.02 1.13 16 33 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 34 H 0.11 3.08 7.39 -2.39 -0.02 3.06 16 35 H 0.12 3.08 7.18 -2.39 -0.02 3.07 16 36 H 0.18 1.46 8.07 -2.38 -0.02 1.44 16 37 H 0.15 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.21 1.40 8.06 -2.91 -0.02 1.38 16 39 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 40 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 41 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 42 H 0.20 2.83 8.06 -2.91 -0.02 2.81 16 Total: -1.00 -87.04 363.62 6.51 -80.53 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: 0.97 Total: 11.60 kcal Atomic # 6 Polarization: 12.57 SS G_CDS: 7.09 Total: 19.66 kcal Atomic # 7 Polarization: -98.78 SS G_CDS: -3.59 Total: -102.37 kcal Atomic # 8 Polarization: -55.21 SS G_CDS: 0.15 Total: -55.06 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 1.88 Total: 45.63 kcal Total: -87.04 6.51 -80.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062573367.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.221 kcal (2) G-P(sol) polarization free energy of solvation -87.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds