Wall clock time and date at job start Fri Apr 10 2020 18:00:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46959 * 2 1 4 4 C 1.52998 * 109.47545 * 239.99740 * 2 1 3 5 5 N 1.46501 * 109.46874 * 294.99763 * 4 2 1 6 6 C 1.35060 * 125.56466 * 90.02550 * 5 4 2 7 7 O 1.21303 * 127.28562 * 359.97438 * 6 5 4 8 8 C 1.49977 * 105.43165 * 179.97438 * 6 5 4 9 9 O 1.21301 * 127.28553 * 179.97438 * 8 6 5 10 10 N 1.35062 * 105.43346 * 0.02562 * 8 6 5 11 11 C 1.46502 * 125.56876 * 180.02562 * 10 8 6 12 12 N 1.46504 * 109.47089 * 89.97382 * 11 10 8 13 13 C 1.36933 * 120.00086 * 89.99579 * 12 11 10 14 14 H 1.07996 * 120.00454 * 218.12467 * 13 12 11 15 15 C 1.38811 * 119.99890 * 38.13774 * 13 12 11 16 16 N 1.31628 * 120.00172 * 20.35228 * 15 13 12 17 17 Si 1.86800 * 120.00084 * 200.35757 * 15 13 12 18 18 H 1.48499 * 109.47132 * 359.97438 * 17 15 13 19 19 H 1.48507 * 109.47435 * 119.99759 * 17 15 13 20 20 H 1.48500 * 109.47193 * 239.99690 * 17 15 13 21 21 C 1.46502 * 120.00003 * 269.99891 * 12 11 10 22 22 C 1.52992 * 117.50021 * 194.19871 * 21 12 11 23 23 C 1.52993 * 60.00104 * 252.51112 * 22 21 12 24 24 C 1.34275 * 108.86387 * 359.75463 * 10 8 6 25 25 O 1.21482 * 124.29963 * 180.24646 * 24 10 8 26 26 H 1.08997 * 109.47526 * 300.00226 * 1 2 3 27 27 H 1.09005 * 109.46713 * 60.00833 * 1 2 3 28 28 H 1.09001 * 109.46685 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47228 * 119.99071 * 2 1 3 30 30 H 1.08997 * 109.47186 * 59.99566 * 3 2 1 31 31 H 1.09003 * 109.46992 * 179.97438 * 3 2 1 32 32 H 1.09005 * 109.46728 * 299.99158 * 3 2 1 33 33 H 1.08998 * 109.47075 * 54.99945 * 4 2 1 34 34 H 1.09003 * 109.47298 * 175.00479 * 4 2 1 35 35 H 1.08995 * 109.46732 * 209.97344 * 11 10 8 36 36 H 1.09000 * 109.47167 * 329.97434 * 11 10 8 37 37 H 0.96994 * 119.99665 * 174.95065 * 16 15 13 38 38 H 1.09002 * 115.54785 * 339.91307 * 21 12 11 39 39 H 1.09001 * 117.50090 * 0.02562 * 22 21 12 40 40 H 1.09004 * 117.49632 * 145.02150 * 22 21 12 41 41 H 1.09001 * 117.50098 * 252.50779 * 23 22 21 42 42 H 1.09003 * 117.52013 * 107.48421 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 1.6526 -2.1329 -1.1904 6 6 0.5063 -2.6538 -1.6789 7 8 -0.3895 -2.0601 -2.2416 8 6 0.5751 -4.1216 -1.3786 9 8 -0.2534 -4.9661 -1.6466 10 7 1.7541 -4.3041 -0.7456 11 6 2.2678 -5.5847 -0.2533 12 7 3.0572 -6.2309 -1.3048 13 6 4.4016 -5.9886 -1.3985 14 1 4.8677 -5.8977 -2.3684 15 6 5.1656 -5.8601 -0.2466 16 7 4.7258 -6.3506 0.8929 17 14 6.8177 -4.9909 -0.3137 18 1 7.0809 -4.5346 -1.7021 19 1 6.7977 -3.8186 0.5977 20 1 7.8881 -5.9290 0.1100 21 6 2.4081 -7.1364 -2.2562 22 6 3.3105 -8.0303 -3.1090 23 6 2.5880 -6.8421 -3.7468 24 6 2.3813 -3.1209 -0.6465 25 8 3.4686 -2.9638 -0.1280 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5137 0.8901 30 1 1.6766 1.9564 0.8899 31 1 3.1300 1.4426 0.0005 32 1 1.6767 1.9563 -0.8901 33 1 1.6055 -0.2618 -2.1369 34 1 3.1264 -0.6444 -1.2950 35 1 2.8974 -5.4122 0.6195 36 1 1.4331 -6.2292 0.0224 37 1 5.2902 -6.3262 1.6814 38 1 1.4502 -7.5465 -1.9362 39 1 4.3871 -7.9452 -2.9619 40 1 2.9464 -9.0291 -3.3500 41 1 1.7487 -7.0591 -4.4076 42 1 3.1890 -5.9746 -4.0197 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065188086.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:00:30 Heat of formation + Delta-G solvation = -13.902276 kcal Electronic energy + Delta-G solvation = -27359.441334 eV Core-core repulsion = 23536.148512 eV Total energy + Delta-G solvation = -3823.292823 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.152 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.74549 -38.69327 -38.57045 -37.10946 -36.43629 -35.70170 -34.18708 -32.91786 -30.59108 -27.92957 -27.29831 -25.58042 -25.03953 -23.74348 -21.48927 -21.48250 -21.29180 -20.21484 -19.88486 -17.70280 -17.17834 -16.61268 -16.50867 -16.10337 -15.66198 -15.02892 -14.86538 -14.76796 -14.55550 -14.33542 -13.95176 -13.89150 -13.47810 -13.07694 -12.98050 -12.41722 -12.32319 -12.08283 -12.04596 -11.59021 -11.38946 -11.15374 -11.12965 -10.92449 -10.87761 -10.77092 -10.70458 -10.31311 -10.14717 -9.91852 -9.68393 -9.64708 -9.62094 -9.14723 -8.63475 -6.90425 -6.13509 -3.68812 0.76443 2.29711 2.71220 2.94846 3.23376 3.31783 3.39501 3.40737 4.28631 4.42389 4.61985 4.68003 4.82944 4.84731 5.01126 5.12284 5.20180 5.35596 5.48697 5.56032 5.59123 5.66528 5.74549 5.77741 5.80646 5.93468 5.94719 6.02919 6.12394 6.14890 6.23366 6.35887 6.38719 6.50563 6.83239 6.95159 7.05528 7.06272 7.42932 7.63413 7.68563 8.17913 8.27787 8.83129 9.46094 9.97363 10.92983 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.013469 B = 0.006291 C = 0.004762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2078.380908 B = 4449.388066 C = 5878.007201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.116 4.116 3 C -0.142 4.142 4 C 0.126 3.874 5 N -0.579 5.579 6 C 0.500 3.500 7 O -0.438 6.438 8 C 0.501 3.499 9 O -0.434 6.434 10 N -0.565 5.565 11 C 0.344 3.656 12 N -0.525 5.525 13 C -0.284 4.284 14 H 0.066 0.934 15 C 0.042 3.958 16 N -0.883 5.883 17 Si 0.910 3.090 18 H -0.276 1.276 19 H -0.279 1.279 20 H -0.289 1.289 21 C 0.113 3.887 22 C -0.184 4.184 23 C -0.221 4.221 24 C 0.699 3.301 25 O -0.471 6.471 26 H 0.056 0.944 27 H 0.060 0.940 28 H 0.049 0.951 29 H 0.080 0.920 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.094 0.906 34 H 0.099 0.901 35 H 0.141 0.859 36 H 0.075 0.925 37 H 0.264 0.736 38 H 0.096 0.904 39 H 0.101 0.899 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.689 9.697 -1.315 11.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.135 4.135 3 C -0.200 4.200 4 C 0.005 3.995 5 N -0.330 5.330 6 C 0.282 3.718 7 O -0.305 6.305 8 C 0.281 3.719 9 O -0.301 6.301 10 N -0.319 5.319 11 C 0.139 3.861 12 N -0.240 5.240 13 C -0.413 4.413 14 H 0.084 0.916 15 C -0.161 4.161 16 N -0.523 5.523 17 Si 0.738 3.262 18 H -0.201 1.201 19 H -0.205 1.205 20 H -0.216 1.216 21 C 0.005 3.995 22 C -0.223 4.223 23 C -0.262 4.262 24 C 0.402 3.598 25 O -0.338 6.338 26 H 0.075 0.925 27 H 0.079 0.921 28 H 0.068 0.932 29 H 0.098 0.902 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.112 0.888 34 H 0.118 0.882 35 H 0.158 0.842 36 H 0.093 0.907 37 H 0.074 0.926 38 H 0.114 0.886 39 H 0.120 0.880 40 H 0.096 0.904 41 H 0.095 0.905 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.867 9.578 -1.215 11.297 hybrid contribution 0.920 0.450 -0.190 1.042 sum -4.947 10.028 -1.405 11.270 Atomic orbital electron populations 1.21853 0.94501 1.01859 1.02034 1.21542 0.96683 0.96870 0.98428 1.21738 1.01351 0.94699 1.02175 1.21801 1.02160 0.76088 0.99431 1.46863 1.20313 1.10371 1.55409 1.21434 0.81907 0.90299 0.78183 1.90751 1.35472 1.68287 1.35965 1.20991 0.83188 0.89246 0.78486 1.90744 1.42118 1.49235 1.48050 1.49882 1.17836 1.11369 1.52831 1.22047 0.93969 0.77005 0.93093 1.43954 1.04940 1.43251 1.31815 1.18934 0.82836 1.46970 0.92527 0.91591 1.25169 0.98308 0.96747 0.95845 1.69761 1.37516 1.43685 1.01300 0.86143 0.82215 0.79561 0.78258 1.20077 1.20476 1.21579 1.21337 0.96134 0.95318 0.86729 1.23055 1.00306 0.93529 1.05375 1.23307 1.03060 1.00300 0.99487 1.16399 0.84162 0.80483 0.78767 1.91005 1.16949 1.82810 1.43046 0.92461 0.92106 0.93225 0.90153 0.92119 0.92140 0.92365 0.88796 0.88239 0.84183 0.90670 0.92621 0.88591 0.88015 0.90381 0.90528 0.89838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 8.52 37.16 0.32 -1.29 16 2 C -0.12 -1.27 3.13 -90.62 -0.28 -1.56 16 3 C -0.14 -1.21 9.19 37.16 0.34 -0.87 16 4 C 0.13 1.56 5.30 -4.04 -0.02 1.54 16 5 N -0.58 -9.17 2.49 -121.22 -0.30 -9.47 16 6 C 0.50 8.37 6.86 -11.21 -0.08 8.30 16 7 O -0.44 -7.56 17.00 5.54 0.09 -7.46 16 8 C 0.50 9.32 8.31 -11.21 -0.09 9.23 16 9 O -0.43 -8.69 17.88 5.54 0.10 -8.59 16 10 N -0.57 -11.12 2.90 -124.72 -0.36 -11.49 16 11 C 0.34 7.49 6.05 -63.75 -0.39 7.11 16 12 N -0.53 -12.17 3.02 -169.35 -0.51 -12.68 16 13 C -0.28 -7.19 8.03 -15.06 -0.12 -7.31 16 14 H 0.07 1.72 7.22 -52.49 -0.38 1.34 16 15 C 0.04 1.09 4.98 -17.43 -0.09 1.00 16 16 N -0.88 -23.32 11.44 55.49 0.63 -22.69 16 17 Si 0.91 21.30 29.60 -169.99 -5.03 16.27 16 18 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 20 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 21 C 0.11 2.34 6.62 -67.94 -0.45 1.89 16 22 C -0.18 -3.53 9.81 -26.74 -0.26 -3.79 16 23 C -0.22 -4.22 10.08 -26.74 -0.27 -4.49 16 24 C 0.70 13.40 8.32 -87.81 -0.73 12.67 16 25 O -0.47 -10.37 17.27 5.38 0.09 -10.28 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.05 0.64 6.17 -51.93 -0.32 0.32 16 29 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.09 1.02 8.10 -51.93 -0.42 0.60 16 34 H 0.10 1.21 7.97 -51.93 -0.41 0.80 16 35 H 0.14 3.42 5.36 -51.93 -0.28 3.14 16 36 H 0.08 1.53 7.99 -51.93 -0.42 1.11 16 37 H 0.26 6.76 8.32 -40.82 -0.34 6.42 16 38 H 0.10 1.89 8.10 -51.93 -0.42 1.47 16 39 H 0.10 2.14 6.96 -51.93 -0.36 1.78 16 40 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 41 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 42 H 0.08 1.71 7.99 -51.93 -0.41 1.29 16 LS Contribution 357.45 15.07 5.39 5.39 Total: -1.00 -28.10 357.45 -7.96 -36.06 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -5.94 Total: 2.52 kcal Atomic # 6 Polarization: 24.55 SS G_CDS: -2.12 Total: 22.43 kcal Atomic # 7 Polarization: -55.79 SS G_CDS: -0.54 Total: -56.33 kcal Atomic # 8 Polarization: -26.62 SS G_CDS: 0.29 Total: -26.33 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.03 Total: 16.27 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -28.10 -7.96 -36.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065188086.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.157 kcal (2) G-P(sol) polarization free energy of solvation -28.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds