Wall clock time and date at job start Fri Apr 10 2020 18:00:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46959 * 2 1 4 4 C 1.52998 * 109.47545 * 239.99740 * 2 1 3 5 5 N 1.46501 * 109.46874 * 294.99763 * 4 2 1 6 6 C 1.35060 * 125.56466 * 90.02550 * 5 4 2 7 7 O 1.21303 * 127.28562 * 359.97438 * 6 5 4 8 8 C 1.49977 * 105.43165 * 179.97438 * 6 5 4 9 9 O 1.21301 * 127.28553 * 179.97438 * 8 6 5 10 10 N 1.35062 * 105.43346 * 0.02562 * 8 6 5 11 11 C 1.46502 * 125.56876 * 180.02562 * 10 8 6 12 12 N 1.46504 * 109.47089 * 89.97382 * 11 10 8 13 13 C 1.36933 * 120.00086 * 89.99579 * 12 11 10 14 14 H 1.07996 * 120.00454 * 218.12467 * 13 12 11 15 15 C 1.38811 * 119.99890 * 38.13774 * 13 12 11 16 16 N 1.31628 * 120.00172 * 20.35228 * 15 13 12 17 17 Si 1.86800 * 120.00084 * 200.35757 * 15 13 12 18 18 H 1.48499 * 109.47132 * 359.97438 * 17 15 13 19 19 H 1.48507 * 109.47435 * 119.99759 * 17 15 13 20 20 H 1.48500 * 109.47193 * 239.99690 * 17 15 13 21 21 C 1.46502 * 120.00003 * 269.99891 * 12 11 10 22 22 C 1.52992 * 117.50021 * 194.19871 * 21 12 11 23 23 C 1.52993 * 60.00104 * 252.51112 * 22 21 12 24 24 C 1.34275 * 108.86387 * 359.75463 * 10 8 6 25 25 O 1.21482 * 124.29963 * 180.24646 * 24 10 8 26 26 H 1.08997 * 109.47526 * 300.00226 * 1 2 3 27 27 H 1.09005 * 109.46713 * 60.00833 * 1 2 3 28 28 H 1.09001 * 109.46685 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47228 * 119.99071 * 2 1 3 30 30 H 1.08997 * 109.47186 * 59.99566 * 3 2 1 31 31 H 1.09003 * 109.46992 * 179.97438 * 3 2 1 32 32 H 1.09005 * 109.46728 * 299.99158 * 3 2 1 33 33 H 1.08998 * 109.47075 * 54.99945 * 4 2 1 34 34 H 1.09003 * 109.47298 * 175.00479 * 4 2 1 35 35 H 1.08995 * 109.46732 * 209.97344 * 11 10 8 36 36 H 1.09000 * 109.47167 * 329.97434 * 11 10 8 37 37 H 0.96994 * 119.99665 * 174.95065 * 16 15 13 38 38 H 1.09002 * 115.54785 * 339.91307 * 21 12 11 39 39 H 1.09001 * 117.50090 * 0.02562 * 22 21 12 40 40 H 1.09004 * 117.49632 * 145.02150 * 22 21 12 41 41 H 1.09001 * 117.50098 * 252.50779 * 23 22 21 42 42 H 1.09003 * 117.52013 * 107.48421 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 1.6526 -2.1329 -1.1904 6 6 0.5063 -2.6538 -1.6789 7 8 -0.3895 -2.0601 -2.2416 8 6 0.5751 -4.1216 -1.3786 9 8 -0.2534 -4.9661 -1.6466 10 7 1.7541 -4.3041 -0.7456 11 6 2.2678 -5.5847 -0.2533 12 7 3.0572 -6.2309 -1.3048 13 6 4.4016 -5.9886 -1.3985 14 1 4.8677 -5.8977 -2.3684 15 6 5.1656 -5.8601 -0.2466 16 7 4.7258 -6.3506 0.8929 17 14 6.8177 -4.9909 -0.3137 18 1 7.0809 -4.5346 -1.7021 19 1 6.7977 -3.8186 0.5977 20 1 7.8881 -5.9290 0.1100 21 6 2.4081 -7.1364 -2.2562 22 6 3.3105 -8.0303 -3.1090 23 6 2.5880 -6.8421 -3.7468 24 6 2.3813 -3.1209 -0.6465 25 8 3.4686 -2.9638 -0.1280 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5137 0.8901 30 1 1.6766 1.9564 0.8899 31 1 3.1300 1.4426 0.0005 32 1 1.6767 1.9563 -0.8901 33 1 1.6055 -0.2618 -2.1369 34 1 3.1264 -0.6444 -1.2950 35 1 2.8974 -5.4122 0.6195 36 1 1.4331 -6.2292 0.0224 37 1 5.2902 -6.3262 1.6814 38 1 1.4502 -7.5465 -1.9362 39 1 4.3871 -7.9452 -2.9619 40 1 2.9464 -9.0291 -3.3500 41 1 1.7487 -7.0591 -4.4076 42 1 3.1890 -5.9746 -4.0197 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000065188086.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:00:29 Heat of formation + Delta-G solvation = -28.590448 kcal Electronic energy + Delta-G solvation = -27360.078261 eV Core-core repulsion = 23536.148512 eV Total energy + Delta-G solvation = -3823.929749 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.152 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -44.24022 -40.21270 -40.05546 -38.75592 -37.62671 -37.22139 -35.69646 -34.53483 -32.34711 -29.30700 -28.10211 -27.20704 -26.50084 -25.42477 -23.02799 -22.90976 -22.73900 -21.74914 -21.12282 -19.26970 -18.63999 -18.19654 -18.07916 -17.53780 -17.37056 -16.49417 -16.44924 -16.22490 -15.83995 -15.77433 -15.58716 -15.47253 -14.72968 -14.59090 -14.02762 -13.76900 -13.72803 -13.25824 -13.16892 -13.03023 -12.90704 -12.76582 -12.60443 -12.55812 -12.25392 -12.04782 -11.99222 -11.92851 -11.71286 -11.62639 -11.27962 -11.15202 -10.92870 -10.75710 -10.51956 -8.72401 -8.06988 -5.64316 -0.72870 0.91601 1.16371 1.41998 1.48813 1.50298 1.52022 1.69120 2.40608 2.91618 3.11964 3.30870 3.38293 3.59919 3.75470 3.93315 3.98662 4.21536 4.27282 4.31059 4.39276 4.43431 4.51635 4.60436 4.66862 4.76836 4.82746 4.87770 4.90892 4.98049 5.01190 5.16230 5.19925 5.25361 5.33159 5.39803 5.48941 5.59001 5.62504 5.88535 6.18795 6.33242 6.69731 6.94477 7.58709 8.09014 8.97288 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.013469 B = 0.006291 C = 0.004762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2078.380908 B = 4449.388066 C = 5878.007201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.112 4.112 3 C -0.136 4.136 4 C 0.117 3.883 5 N -0.566 5.566 6 C 0.516 3.484 7 O -0.434 6.434 8 C 0.503 3.497 9 O -0.446 6.446 10 N -0.572 5.572 11 C 0.353 3.647 12 N -0.541 5.541 13 C -0.279 4.279 14 H 0.053 0.947 15 C 0.007 3.993 16 N -0.904 5.904 17 Si 0.950 3.050 18 H -0.275 1.275 19 H -0.289 1.289 20 H -0.284 1.284 21 C 0.091 3.909 22 C -0.175 4.175 23 C -0.206 4.206 24 C 0.704 3.296 25 O -0.502 6.502 26 H 0.071 0.929 27 H 0.067 0.933 28 H 0.026 0.974 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.116 0.884 34 H 0.102 0.898 35 H 0.115 0.885 36 H 0.086 0.914 37 H 0.261 0.739 38 H 0.108 0.892 39 H 0.079 0.921 40 H 0.107 0.893 41 H 0.101 0.899 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.579 10.858 -2.354 12.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.132 4.132 3 C -0.194 4.194 4 C -0.002 4.002 5 N -0.315 5.315 6 C 0.297 3.703 7 O -0.301 6.301 8 C 0.284 3.716 9 O -0.314 6.314 10 N -0.325 5.325 11 C 0.148 3.852 12 N -0.257 5.257 13 C -0.408 4.408 14 H 0.071 0.929 15 C -0.193 4.193 16 N -0.545 5.545 17 Si 0.779 3.221 18 H -0.200 1.200 19 H -0.216 1.216 20 H -0.210 1.210 21 C -0.016 4.016 22 C -0.214 4.214 23 C -0.246 4.246 24 C 0.407 3.593 25 O -0.371 6.371 26 H 0.090 0.910 27 H 0.086 0.914 28 H 0.045 0.955 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.134 0.866 34 H 0.120 0.880 35 H 0.133 0.867 36 H 0.104 0.896 37 H 0.071 0.929 38 H 0.125 0.875 39 H 0.097 0.903 40 H 0.125 0.875 41 H 0.120 0.880 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.782 10.772 -2.284 12.933 hybrid contribution 1.099 0.124 0.097 1.110 sum -5.683 10.896 -2.186 12.482 Atomic orbital electron populations 1.21834 0.94324 1.00639 1.03137 1.21520 0.96727 0.98145 0.96788 1.21707 1.01417 0.92851 1.03408 1.22221 1.02721 0.74030 1.01249 1.46830 1.19293 1.11125 1.54302 1.20885 0.82101 0.89099 0.78226 1.90764 1.35421 1.67878 1.36024 1.21188 0.82409 0.90212 0.77783 1.90734 1.42302 1.50020 1.48308 1.49441 1.18483 1.11315 1.53227 1.21665 0.93794 0.77657 0.92127 1.44005 1.04503 1.44604 1.32619 1.18870 0.83962 1.46181 0.91821 0.92910 1.25600 1.00291 0.97563 0.95869 1.69839 1.38128 1.45017 1.01515 0.85507 0.80372 0.78476 0.77783 1.19972 1.21604 1.21024 1.21543 0.96908 0.96090 0.87093 1.23045 0.98857 0.94995 1.04461 1.23250 1.03307 0.99530 0.98537 1.16372 0.83800 0.80793 0.78369 1.90989 1.18363 1.83264 1.44513 0.91047 0.91374 0.95497 0.91949 0.91152 0.92040 0.90889 0.86571 0.87966 0.86721 0.89570 0.92929 0.87480 0.90252 0.87479 0.88036 0.91606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 8.52 71.98 0.61 -2.24 16 2 C -0.11 -2.28 3.13 -10.79 -0.03 -2.31 16 3 C -0.14 -1.98 9.19 71.98 0.66 -1.32 16 4 C 0.12 2.68 5.30 86.38 0.46 3.14 16 5 N -0.57 -17.33 2.49 -774.23 -1.93 -19.25 16 6 C 0.52 16.52 6.86 87.39 0.60 17.12 16 7 O -0.43 -14.05 17.00 -3.10 -0.05 -14.10 16 8 C 0.50 18.30 8.31 87.39 0.73 19.03 16 9 O -0.45 -17.34 17.88 -3.09 -0.06 -17.40 16 10 N -0.57 -22.46 2.90 -785.31 -2.28 -24.74 16 11 C 0.35 15.55 6.05 170.96 1.03 16.58 16 12 N -0.54 -25.17 3.02 -689.71 -2.08 -27.25 16 13 C -0.28 -14.29 8.03 84.03 0.67 -13.62 16 14 H 0.05 2.81 7.22 -2.91 -0.02 2.78 16 15 C 0.01 0.38 4.98 84.86 0.42 0.80 16 16 N -0.90 -48.64 11.44 21.65 0.25 -48.39 16 17 Si 0.95 44.21 29.60 68.60 2.03 46.24 16 18 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 19 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 20 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 21 C 0.09 3.68 6.62 44.99 0.30 3.98 16 22 C -0.18 -6.48 9.81 30.59 0.30 -6.18 16 23 C -0.21 -7.53 10.08 30.59 0.31 -7.23 16 24 C 0.70 26.90 8.32 179.37 1.49 28.40 16 25 O -0.50 -22.36 17.27 -3.66 -0.06 -22.43 16 26 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 28 H 0.03 0.65 6.17 -2.39 -0.01 0.63 16 29 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 30 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 33 H 0.12 2.19 8.10 -2.39 -0.02 2.17 16 34 H 0.10 2.34 7.97 -2.39 -0.02 2.32 16 35 H 0.12 5.74 5.36 -2.39 -0.01 5.73 16 36 H 0.09 3.52 7.99 -2.39 -0.02 3.51 16 37 H 0.26 13.66 8.32 -92.71 -0.77 12.89 16 38 H 0.11 4.07 8.10 -2.39 -0.02 4.05 16 39 H 0.08 3.32 6.96 -2.39 -0.02 3.30 16 40 H 0.11 3.32 8.14 -2.38 -0.02 3.30 16 41 H 0.10 3.20 8.14 -2.39 -0.02 3.18 16 42 H 0.07 2.64 7.99 -2.39 -0.02 2.62 16 Total: -1.00 -59.71 357.45 4.41 -55.30 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: 1.03 Total: 15.85 kcal Atomic # 6 Polarization: 48.60 SS G_CDS: 7.55 Total: 56.16 kcal Atomic # 7 Polarization: -113.59 SS G_CDS: -6.04 Total: -119.64 kcal Atomic # 8 Polarization: -53.75 SS G_CDS: -0.17 Total: -53.92 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -59.71 4.41 -55.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065188086.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.714 kcal (2) G-P(sol) polarization free energy of solvation -59.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds