Wall clock time and date at job start Fri Apr 10 2020 18:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.47177 * 2 1 4 4 C 1.37090 * 120.00583 * 264.76763 * 3 2 1 5 5 H 1.08003 * 119.99814 * 138.84893 * 4 3 2 6 6 C 1.38947 * 120.00217 * 318.86249 * 4 3 2 7 7 N 1.31415 * 119.99544 * 341.81934 * 6 4 3 8 8 Si 1.86802 * 120.00457 * 161.82602 * 6 4 3 9 9 H 1.48500 * 109.47183 * 89.99248 * 8 6 4 10 10 H 1.48498 * 109.46915 * 209.99527 * 8 6 4 11 11 H 1.48500 * 109.46560 * 329.99640 * 8 6 4 12 12 C 1.34782 * 119.99495 * 84.77471 * 3 2 1 13 13 O 1.21295 * 119.99894 * 180.02562 * 12 3 2 14 14 C 1.50695 * 120.00238 * 359.97438 * 12 3 2 15 15 N 1.46494 * 109.47378 * 180.02562 * 14 12 3 16 16 C 1.34009 * 124.22032 * 89.97989 * 15 14 12 17 17 O 1.21538 * 123.81715 * 359.94135 * 16 15 14 18 18 N 1.34983 * 112.37023 * 179.97438 * 16 15 14 19 19 C 1.45939 * 105.99492 * 0.02562 * 18 16 15 20 20 C 1.53576 * 112.01246 * 238.42041 * 19 18 16 21 21 C 1.54499 * 104.07929 * 275.01438 * 20 19 18 22 22 C 1.53960 * 106.66724 * 337.67452 * 21 20 19 23 23 C 1.53565 * 112.01968 * 121.58067 * 19 18 16 24 24 C 1.35205 * 124.22768 * 269.95448 * 15 14 12 25 25 O 1.21235 * 127.46339 * 0.03822 * 24 15 14 26 26 H 1.09003 * 109.47493 * 59.99363 * 1 2 3 27 27 H 1.08998 * 109.47185 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46960 * 299.99714 * 1 2 3 29 29 H 1.09004 * 109.46877 * 240.00796 * 2 1 3 30 30 H 1.08994 * 109.47655 * 120.00576 * 2 1 3 31 31 H 0.97008 * 119.99602 * 180.02562 * 7 6 4 32 32 H 1.08998 * 109.47052 * 60.00210 * 14 12 3 33 33 H 1.09001 * 109.47397 * 300.00653 * 14 12 3 34 34 H 0.96993 * 127.00600 * 180.02562 * 18 16 15 35 35 H 1.08995 * 110.50814 * 156.36330 * 20 19 18 36 36 H 1.09002 * 110.50723 * 33.66379 * 20 19 18 37 37 H 1.09004 * 110.01708 * 218.36910 * 21 20 19 38 38 H 1.09005 * 110.02092 * 96.97482 * 21 20 19 39 39 H 1.09001 * 110.02708 * 119.30671 * 22 21 20 40 40 H 1.09006 * 110.02366 * 240.70534 * 22 21 20 41 41 H 1.09008 * 110.50432 * 326.33776 * 23 19 18 42 42 H 1.09001 * 110.51286 * 203.63400 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3489 1.9915 -1.1822 5 1 2.0743 3.0219 -1.3533 6 6 3.0371 1.2843 -2.1605 7 7 3.6790 0.1819 -1.8451 8 14 3.0499 1.9007 -3.9238 9 1 4.2055 2.8122 -4.1212 10 1 3.1658 0.7464 -4.8508 11 1 1.7884 2.6336 -4.2011 12 6 2.1427 2.0519 1.1625 13 8 2.5466 3.1956 1.1625 14 6 1.7789 1.3813 2.4620 15 7 2.0001 2.3127 3.5709 16 6 1.0737 3.1599 4.0397 17 8 -0.0527 3.2461 3.5915 18 7 1.5332 3.9074 5.0655 19 6 2.9156 3.4911 5.2787 20 6 3.1469 2.9718 6.7054 21 6 3.4248 4.2487 7.5297 22 6 3.9016 5.3219 6.5341 23 6 3.8982 4.6627 5.1367 24 6 3.1642 2.4245 4.2494 25 8 4.1872 1.8001 4.0667 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5137 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 4.1598 -0.3117 -2.5280 32 1 2.4003 0.4966 2.6007 33 1 0.7294 1.0879 2.4382 34 1 1.0443 4.5834 5.5601 35 1 4.0078 2.3040 6.7339 36 1 2.2563 2.4643 7.0761 37 1 4.2017 4.0538 8.2689 38 1 2.5118 4.5789 8.0254 39 1 3.2200 6.1724 6.5471 40 1 4.9099 5.6473 6.7906 41 1 3.5460 5.3671 4.3831 42 1 4.8938 4.2978 4.8841 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068231261.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:00:36 Heat of formation + Delta-G solvation = -98.594751 kcal Electronic energy + Delta-G solvation = -26959.077643 eV Core-core repulsion = 23132.112279 eV Total energy + Delta-G solvation = -3826.965364 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.152 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.77062 -40.53937 -39.85852 -38.82988 -37.12303 -36.69682 -34.78618 -34.02287 -31.23469 -30.16560 -29.91963 -29.19847 -26.73582 -24.70082 -24.09706 -22.85430 -21.63533 -21.42804 -20.75404 -19.07626 -18.94099 -18.25886 -17.72104 -17.29050 -17.05513 -16.77034 -16.71365 -16.22190 -15.85869 -15.65928 -15.56966 -15.30172 -14.72292 -14.60261 -14.44267 -13.88519 -13.62848 -13.60902 -13.15554 -12.90986 -12.89584 -12.72387 -12.70652 -12.36928 -12.20568 -12.15167 -12.11386 -12.00111 -11.86004 -11.47138 -11.30532 -11.26160 -10.95293 -10.52917 -10.29719 -9.48470 -8.39184 -6.16771 0.46852 1.02167 1.34812 1.38896 1.52056 1.84850 1.88649 2.11138 2.27461 2.80410 2.95410 2.98818 3.40237 3.41924 3.79766 3.86103 4.00243 4.06467 4.21588 4.30083 4.34161 4.38389 4.45250 4.50008 4.58226 4.67142 4.77686 4.80045 4.99103 5.00040 5.02778 5.21926 5.25625 5.27750 5.40582 5.45547 5.50283 5.75047 5.95336 6.16236 6.27480 6.46098 7.02126 7.09928 7.33703 7.93035 8.64776 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.022444 B = 0.004030 C = 0.003822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.253276 B = 6945.723132 C = 7324.769324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.096 3.904 3 N -0.444 5.444 4 C -0.345 4.345 5 H 0.059 0.941 6 C 0.008 3.992 7 N -0.887 5.887 8 Si 0.984 3.016 9 H -0.279 1.279 10 H -0.263 1.263 11 H -0.267 1.267 12 C 0.433 3.567 13 O -0.621 6.621 14 C 0.111 3.889 15 N -0.566 5.566 16 C 0.703 3.297 17 O -0.576 6.576 18 N -0.686 5.686 19 C 0.119 3.881 20 C -0.111 4.111 21 C -0.113 4.113 22 C -0.114 4.114 23 C -0.121 4.121 24 C 0.529 3.471 25 O -0.493 6.493 26 H 0.043 0.957 27 H 0.092 0.908 28 H 0.050 0.950 29 H 0.086 0.914 30 H 0.069 0.931 31 H 0.276 0.724 32 H 0.126 0.874 33 H 0.130 0.870 34 H 0.454 0.546 35 H 0.089 0.911 36 H 0.094 0.906 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.067 0.933 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.517 2.509 19.022 19.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.027 4.027 3 N -0.163 5.163 4 C -0.473 4.473 5 H 0.077 0.923 6 C -0.195 4.195 7 N -0.524 5.524 8 Si 0.807 3.193 9 H -0.205 1.205 10 H -0.187 1.187 11 H -0.191 1.191 12 C 0.221 3.779 13 O -0.508 6.508 14 C -0.014 4.014 15 N -0.311 5.311 16 C 0.404 3.596 17 O -0.453 6.453 18 N -0.352 5.352 19 C 0.028 3.972 20 C -0.149 4.149 21 C -0.151 4.151 22 C -0.151 4.151 23 C -0.160 4.160 24 C 0.318 3.682 25 O -0.364 6.364 26 H 0.062 0.938 27 H 0.110 0.890 28 H 0.069 0.931 29 H 0.104 0.896 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.144 0.856 33 H 0.148 0.852 34 H 0.302 0.698 35 H 0.108 0.892 36 H 0.113 0.887 37 H 0.109 0.891 38 H 0.108 0.892 39 H 0.102 0.898 40 H 0.104 0.896 41 H 0.086 0.914 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.257 2.521 18.515 18.821 hybrid contribution 0.040 0.405 -1.384 1.443 sum -2.217 2.926 17.130 17.519 Atomic orbital electron populations 1.22127 0.94955 1.02902 1.01331 1.21695 0.94223 0.83096 1.03638 1.43698 1.55417 1.13118 1.04108 1.19313 1.37165 0.98245 0.92584 0.92321 1.26181 0.92810 0.96490 1.04033 1.69990 1.28926 1.17996 1.35509 0.85106 0.78738 0.78305 0.77182 1.20525 1.18699 1.19097 1.21289 0.82025 0.88130 0.86498 1.90473 1.52222 1.20615 1.87493 1.21523 1.05641 0.91453 0.82800 1.46212 1.14896 1.37725 1.32241 1.16115 0.83546 0.79256 0.80649 1.90948 1.19399 1.71057 1.63855 1.45044 1.12857 1.41936 1.35337 1.21520 0.84300 0.94332 0.97023 1.22552 1.04055 1.00095 0.88239 1.22218 1.03237 0.92121 0.97490 1.22219 1.03559 0.98531 0.90823 1.22530 0.97797 0.94697 1.00980 1.21176 0.81798 0.83168 0.82094 1.90754 1.27902 1.48728 1.69040 0.93813 0.88955 0.93126 0.89566 0.91269 0.91482 0.85605 0.85245 0.69826 0.89228 0.88705 0.89131 0.89245 0.89847 0.89589 0.91392 0.90240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.47 10.15 71.98 0.73 -4.74 16 2 C 0.10 4.19 5.41 86.38 0.47 4.66 16 3 N -0.44 -23.76 2.50 -635.55 -1.59 -25.35 16 4 C -0.35 -20.29 8.84 84.04 0.74 -19.55 16 5 H 0.06 3.70 7.82 -2.91 -0.02 3.68 16 6 C 0.01 0.44 4.95 84.93 0.42 0.86 16 7 N -0.89 -48.77 11.61 21.66 0.25 -48.51 16 8 Si 0.98 43.29 29.59 68.60 2.03 45.32 16 9 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 10 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 11 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 12 C 0.43 22.97 7.66 87.65 0.67 23.64 16 13 O -0.62 -38.09 16.34 -3.08 -0.05 -38.14 16 14 C 0.11 4.52 4.80 85.63 0.41 4.93 16 15 N -0.57 -21.53 2.11 -777.50 -1.64 -23.17 16 16 C 0.70 24.97 8.64 179.23 1.55 26.52 16 17 O -0.58 -24.11 17.49 -3.84 -0.07 -24.18 16 18 N -0.69 -16.62 6.03 -441.71 -2.66 -19.29 16 19 C 0.12 2.87 1.04 3.22 0.00 2.87 16 20 C -0.11 -1.72 6.02 31.30 0.19 -1.53 16 21 C -0.11 -1.07 6.82 31.43 0.21 -0.86 16 22 C -0.11 -1.39 6.82 31.43 0.21 -1.17 16 23 C -0.12 -2.66 6.03 31.30 0.19 -2.47 16 24 C 0.53 18.58 7.02 87.46 0.61 19.20 16 25 O -0.49 -20.01 17.80 -2.89 -0.05 -20.06 16 26 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 28 H 0.05 1.71 6.60 -2.39 -0.02 1.70 16 29 H 0.09 4.12 5.76 -2.38 -0.01 4.11 16 30 H 0.07 2.65 6.66 -2.39 -0.02 2.64 16 31 H 0.28 14.05 8.31 -92.70 -0.77 13.28 16 32 H 0.13 4.67 7.29 -2.39 -0.02 4.65 16 33 H 0.13 4.69 6.26 -2.39 -0.01 4.67 16 34 H 0.45 7.70 8.96 -92.71 -0.83 6.87 16 35 H 0.09 1.49 8.07 -2.39 -0.02 1.47 16 36 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.09 0.63 8.14 -2.38 -0.02 0.61 16 38 H 0.09 0.55 8.14 -2.38 -0.02 0.53 16 39 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.09 0.88 8.14 -2.38 -0.02 0.86 16 41 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 42 H 0.08 1.95 8.07 -2.39 -0.02 1.93 16 Total: -1.00 -81.49 347.93 2.86 -78.63 By element: Atomic # 1 Polarization: 22.18 SS G_CDS: 0.23 Total: 22.40 kcal Atomic # 6 Polarization: 45.94 SS G_CDS: 6.42 Total: 52.36 kcal Atomic # 7 Polarization: -110.68 SS G_CDS: -5.64 Total: -116.33 kcal Atomic # 8 Polarization: -82.22 SS G_CDS: -0.17 Total: -82.39 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -81.49 2.86 -78.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068231261.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.963 kcal (2) G-P(sol) polarization free energy of solvation -81.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds