Wall clock time and date at job start Fri Apr 10 2020 18:00:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46496 * 109.47443 * 2 1 4 4 C 1.37095 * 120.00518 * 95.82678 * 3 2 1 5 5 H 1.08005 * 120.00180 * 218.92504 * 4 3 2 6 6 C 1.38948 * 120.00080 * 38.92187 * 4 3 2 7 7 N 1.31413 * 119.99700 * 25.44824 * 6 4 3 8 8 Si 1.86793 * 120.00224 * 205.17593 * 6 4 3 9 9 H 1.48499 * 109.47276 * 359.97438 * 8 6 4 10 10 H 1.48505 * 109.47139 * 120.00227 * 8 6 4 11 11 H 1.48507 * 109.47197 * 239.99620 * 8 6 4 12 12 C 1.34780 * 119.99527 * 275.83267 * 3 2 1 13 13 O 1.21300 * 119.99901 * 179.97438 * 12 3 2 14 14 C 1.50703 * 120.00439 * 359.97438 * 12 3 2 15 15 N 1.46500 * 109.47297 * 180.02562 * 14 12 3 16 16 C 1.33788 * 124.17526 * 90.02356 * 15 14 12 17 17 O 1.21540 * 123.77850 * 359.96478 * 16 15 14 18 18 N 1.34530 * 112.45590 * 179.97438 * 16 15 14 19 19 C 1.47313 * 106.61982 * 0.02562 * 18 16 15 20 20 C 1.52999 * 110.59925 * 241.47690 * 19 18 16 21 21 C 1.52999 * 110.60111 * 118.67790 * 19 18 16 22 22 C 1.52999 * 117.50031 * 135.19993 * 21 19 18 23 23 C 1.53001 * 117.49589 * 66.54107 * 21 19 18 24 24 C 1.34763 * 124.17774 * 269.72388 * 15 14 12 25 25 O 1.21242 * 127.15263 * 0.02562 * 24 15 14 26 26 H 1.08997 * 109.46931 * 59.99859 * 1 2 3 27 27 H 1.09001 * 109.47123 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47051 * 300.00261 * 1 2 3 29 29 H 1.09003 * 109.47051 * 239.99739 * 2 1 3 30 30 H 1.09003 * 109.46919 * 119.99660 * 2 1 3 31 31 H 0.97000 * 119.99809 * 5.27322 * 7 6 4 32 32 H 1.09008 * 109.46615 * 300.00421 * 14 12 3 33 33 H 1.08992 * 109.46744 * 59.99964 * 14 12 3 34 34 H 0.96999 * 126.68898 * 180.02562 * 18 16 15 35 35 H 1.08990 * 109.47373 * 59.29886 * 20 19 18 36 36 H 1.09005 * 109.46847 * 179.29988 * 20 19 18 37 37 H 1.09000 * 109.46750 * 299.29231 * 20 19 18 38 38 H 1.08998 * 115.55151 * 280.87766 * 21 19 18 39 39 H 1.09006 * 117.49354 * 0.02562 * 22 21 19 40 40 H 1.08999 * 117.49933 * 145.02424 * 22 21 19 41 41 H 1.09002 * 117.50019 * 214.97801 * 23 21 19 42 42 H 1.09001 * 117.50104 * 359.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3606 1.9873 1.1811 5 1 2.1195 3.0274 1.3440 6 6 3.0176 1.2636 2.1686 7 7 3.7435 0.2175 1.8435 8 14 2.8753 1.7821 3.9575 9 1 2.0120 2.9863 4.0567 10 1 2.2760 0.6764 4.7472 11 1 4.2252 2.0960 4.4908 12 6 2.1312 2.0560 -1.1612 13 8 2.5352 3.1997 -1.1613 14 6 1.7555 1.3896 -2.4597 15 7 1.9667 2.3246 -3.5675 16 6 3.1130 2.4369 -4.2481 17 8 4.1039 1.7722 -4.0170 18 7 3.0464 3.3680 -5.2168 19 6 1.6881 3.9357 -5.1630 20 6 0.9470 3.6841 -6.4776 21 6 1.7425 5.4334 -4.8555 22 6 0.8487 6.3578 -5.6848 23 6 2.3624 6.3495 -5.9126 24 6 1.0284 3.1739 -4.0307 25 8 -0.1065 3.3036 -3.6243 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.8833 -0.0044 0.9096 32 1 2.3762 0.5057 -2.6073 33 1 0.7065 1.0955 -2.4268 34 1 3.7547 3.6169 -5.8310 35 1 0.8854 2.6114 -6.6605 36 1 -0.0584 4.1001 -6.4132 37 1 1.4861 4.1619 -7.2957 38 1 1.9015 5.6931 -3.8089 39 1 0.2217 5.8987 -6.4491 40 1 0.4200 7.2257 -5.1838 41 1 2.9288 7.2121 -5.5615 42 1 2.7319 5.8851 -6.8269 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068241213.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:00:39 Heat of formation + Delta-G solvation = -37.305032 kcal Electronic energy + Delta-G solvation = -26984.688583 eV Core-core repulsion = 23160.380940 eV Total energy + Delta-G solvation = -3824.307642 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.152 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.46276 -38.89422 -38.49489 -37.85467 -35.68875 -35.29545 -34.10454 -32.06930 -30.31399 -29.53416 -28.46488 -25.68841 -24.45599 -23.05305 -22.74126 -22.48746 -21.21857 -19.97894 -19.16413 -17.79959 -17.50424 -16.99853 -16.61919 -15.93952 -15.50979 -15.43278 -15.34066 -14.53267 -14.50196 -14.29599 -13.87278 -13.76884 -13.51187 -13.11767 -12.90259 -12.85520 -12.69205 -12.57875 -11.97283 -11.59218 -11.54280 -11.35274 -11.10825 -11.04672 -10.93727 -10.73692 -10.40726 -10.35525 -10.21418 -9.95356 -9.89659 -9.86433 -9.46057 -8.90862 -8.39883 -7.74089 -6.60490 -4.00371 1.76542 2.26853 3.08524 3.24634 3.31927 3.36665 3.47302 3.55525 3.73417 4.02298 4.21055 4.25125 4.43054 4.66618 4.67564 4.78351 4.99253 5.01630 5.14158 5.22572 5.35980 5.41264 5.44369 5.46962 5.53233 5.67993 5.73734 5.75868 5.82791 5.84135 5.94059 6.01522 6.11701 6.31353 6.66240 6.83047 6.84152 7.22278 7.52076 7.93343 8.10374 8.28685 8.63612 8.89626 9.36296 9.80719 10.64386 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.021015 B = 0.004065 C = 0.003972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.066420 B = 6886.776386 C = 7048.527653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.086 3.914 3 N -0.445 5.445 4 C -0.395 4.395 5 H 0.082 0.918 6 C 0.010 3.990 7 N -0.874 5.874 8 Si 1.080 2.920 9 H -0.283 1.283 10 H -0.282 1.282 11 H -0.286 1.286 12 C 0.445 3.555 13 O -0.566 6.566 14 C 0.100 3.900 15 N -0.553 5.553 16 C 0.710 3.290 17 O -0.538 6.538 18 N -0.720 5.720 19 C 0.155 3.845 20 C -0.150 4.150 21 C -0.156 4.156 22 C -0.165 4.165 23 C -0.166 4.166 24 C 0.539 3.461 25 O -0.463 6.463 26 H 0.045 0.955 27 H 0.055 0.945 28 H 0.063 0.937 29 H 0.052 0.948 30 H 0.096 0.904 31 H 0.275 0.725 32 H 0.112 0.888 33 H 0.109 0.891 34 H 0.435 0.565 35 H 0.069 0.931 36 H 0.087 0.913 37 H 0.078 0.922 38 H 0.118 0.882 39 H 0.105 0.895 40 H 0.100 0.900 41 H 0.100 0.900 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.666 4.699 -16.983 18.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.038 4.038 3 N -0.166 5.166 4 C -0.522 4.522 5 H 0.100 0.900 6 C -0.198 4.198 7 N -0.508 5.508 8 Si 0.906 3.094 9 H -0.209 1.209 10 H -0.208 1.208 11 H -0.212 1.212 12 C 0.232 3.768 13 O -0.448 6.448 14 C -0.025 4.025 15 N -0.298 5.298 16 C 0.410 3.590 17 O -0.411 6.411 18 N -0.384 5.384 19 C 0.064 3.936 20 C -0.208 4.208 21 C -0.175 4.175 22 C -0.203 4.203 23 C -0.203 4.203 24 C 0.325 3.675 25 O -0.332 6.332 26 H 0.064 0.936 27 H 0.074 0.926 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.115 0.885 31 H 0.086 0.914 32 H 0.130 0.870 33 H 0.127 0.873 34 H 0.279 0.721 35 H 0.088 0.912 36 H 0.106 0.894 37 H 0.097 0.903 38 H 0.136 0.864 39 H 0.123 0.877 40 H 0.119 0.881 41 H 0.119 0.881 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -6.148 4.448 -14.967 16.781 hybrid contribution 0.000 0.420 -1.718 1.769 sum -6.148 4.869 -16.685 18.436 Atomic orbital electron populations 1.22161 0.96970 1.00856 1.02122 1.21652 0.93484 0.85694 1.02964 1.43559 1.56127 1.11755 1.05139 1.20258 1.40650 0.99387 0.91905 0.90005 1.26443 0.91765 0.95630 1.05924 1.70692 1.30138 1.28230 1.21766 0.83351 0.76684 0.75960 0.73394 1.20896 1.20774 1.21192 1.20397 0.83188 0.88650 0.84591 1.90536 1.49739 1.18343 1.86228 1.21701 1.03989 0.91754 0.85026 1.45832 1.13696 1.37997 1.32232 1.15772 0.82839 0.80936 0.79408 1.91009 1.31587 1.48596 1.69885 1.45533 1.14841 1.40497 1.37533 1.20763 0.83355 0.93357 0.96081 1.22109 1.01205 1.03326 0.94115 1.22238 1.07615 0.88615 0.99073 1.23166 0.93300 1.01335 1.02465 1.22965 0.96199 1.01490 0.99609 1.20539 0.85204 0.79017 0.82768 1.90762 1.16570 1.64650 1.61238 0.93589 0.92562 0.91823 0.92936 0.88539 0.91403 0.86965 0.87324 0.72051 0.91240 0.89440 0.90330 0.86396 0.87684 0.88109 0.88129 0.88488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.87 10.13 37.16 0.38 -2.49 16 2 C 0.09 1.82 4.92 -4.04 -0.02 1.80 16 3 N -0.44 -11.42 2.28 -114.81 -0.26 -11.68 16 4 C -0.39 -11.25 8.80 -14.94 -0.13 -11.38 16 5 H 0.08 2.50 7.83 -52.48 -0.41 2.09 16 6 C 0.01 0.26 4.76 -17.47 -0.08 0.18 16 7 N -0.87 -24.75 12.33 55.50 0.68 -24.07 16 8 Si 1.08 24.28 29.99 -169.99 -5.10 19.18 16 9 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 10 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 11 H -0.29 -6.40 7.11 56.52 0.40 -5.99 16 12 C 0.44 11.32 7.65 -10.98 -0.08 11.23 16 13 O -0.57 -16.54 16.32 5.54 0.09 -16.45 16 14 C 0.10 1.98 4.79 -5.19 -0.02 1.96 16 15 N -0.55 -10.32 2.09 -122.02 -0.26 -10.57 16 16 C 0.71 12.87 8.62 -88.02 -0.76 12.11 16 17 O -0.54 -11.63 17.48 5.33 0.09 -11.54 16 18 N -0.72 -9.30 5.90 -52.94 -0.31 -9.61 16 19 C 0.16 1.90 1.17 -132.09 -0.16 1.75 16 20 C -0.15 -1.25 7.62 37.16 0.28 -0.97 16 21 C -0.16 -1.80 5.43 -90.62 -0.49 -2.29 16 22 C -0.17 -1.39 9.68 -26.69 -0.26 -1.65 16 23 C -0.17 -1.33 9.91 -26.69 -0.26 -1.59 16 24 C 0.54 9.12 6.99 -10.56 -0.07 9.05 16 25 O -0.46 -8.75 17.76 5.59 0.10 -8.65 16 26 H 0.05 0.77 6.53 -51.93 -0.34 0.43 16 27 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.05 0.98 6.68 -51.93 -0.35 0.63 16 30 H 0.10 2.24 5.80 -51.93 -0.30 1.94 16 31 H 0.28 7.91 7.32 -40.82 -0.30 7.61 16 32 H 0.11 2.08 7.13 -51.92 -0.37 1.71 16 33 H 0.11 1.90 6.33 -51.93 -0.33 1.57 16 34 H 0.44 4.29 8.96 -40.82 -0.37 3.92 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.09 0.69 6.74 -51.93 -0.35 0.34 16 37 H 0.08 0.46 7.25 -51.93 -0.38 0.09 16 38 H 0.12 1.73 8.14 -51.93 -0.42 1.30 16 39 H 0.10 0.72 5.94 -51.93 -0.31 0.41 16 40 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.10 0.60 7.46 -51.93 -0.39 0.22 16 LS Contribution 348.76 15.07 5.26 5.26 Total: -1.00 -36.63 348.76 -6.91 -43.54 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -5.52 Total: 6.90 kcal Atomic # 6 Polarization: 19.39 SS G_CDS: -1.69 Total: 17.70 kcal Atomic # 7 Polarization: -55.79 SS G_CDS: -0.14 Total: -55.93 kcal Atomic # 8 Polarization: -36.93 SS G_CDS: 0.28 Total: -36.64 kcal Atomic # 14 Polarization: 24.28 SS G_CDS: -5.10 Total: 19.18 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -36.63 -6.91 -43.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068241213.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.230 kcal (2) G-P(sol) polarization free energy of solvation -36.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds