Wall clock time and date at job start Fri Apr 10 2020 18:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46926 * 2 1 4 4 C 1.50702 * 109.46896 * 119.99631 * 2 1 3 5 5 H 1.08001 * 120.00089 * 85.05397 * 4 2 1 6 6 C 1.37880 * 119.99796 * 265.05089 * 4 2 1 7 7 N 1.31514 * 119.99543 * 176.46253 * 6 4 2 8 8 Si 1.86794 * 120.00028 * 356.46680 * 6 4 2 9 9 H 1.48499 * 109.47255 * 274.92138 * 8 6 4 10 10 H 1.48497 * 109.47373 * 34.92801 * 8 6 4 11 11 H 1.48507 * 109.46963 * 154.92420 * 8 6 4 12 12 N 1.46495 * 109.47398 * 239.99722 * 2 1 3 13 13 C 1.46498 * 120.00086 * 300.00036 * 12 2 1 14 14 C 1.34780 * 120.00002 * 119.99746 * 12 2 1 15 15 O 1.21279 * 119.99864 * 0.02562 * 14 12 2 16 16 C 1.50696 * 119.99900 * 179.97438 * 14 12 2 17 17 C 1.52999 * 109.47224 * 180.02562 * 16 14 12 18 18 C 1.52996 * 109.47309 * 180.02562 * 17 16 14 19 19 O 1.42904 * 109.47054 * 180.02562 * 18 17 16 20 20 C 1.35901 * 117.00069 * 180.02562 * 19 18 17 21 21 C 1.38773 * 120.04078 * 359.72039 * 20 19 18 22 22 C 1.38129 * 119.99181 * 179.74598 * 21 20 19 23 23 C 1.38252 * 120.08083 * 0.53474 * 22 21 20 24 24 C 1.38470 * 120.08527 * 359.74280 * 23 22 21 25 25 F 1.35104 * 119.99707 * 180.02562 * 24 23 22 26 26 C 1.38385 * 120.00628 * 359.97438 * 24 23 22 27 27 H 1.08997 * 109.47748 * 305.54647 * 1 2 3 28 28 H 1.09001 * 109.47150 * 65.54826 * 1 2 3 29 29 H 1.09004 * 109.47201 * 185.54431 * 1 2 3 30 30 H 0.97005 * 119.99553 * 179.97438 * 7 6 4 31 31 H 1.09003 * 109.47307 * 89.99868 * 13 12 2 32 32 H 1.09006 * 109.47299 * 209.99961 * 13 12 2 33 33 H 1.09005 * 109.47170 * 330.00001 * 13 12 2 34 34 H 1.08999 * 109.47605 * 300.00054 * 16 14 12 35 35 H 1.09002 * 109.47117 * 60.00098 * 16 14 12 36 36 H 1.08999 * 109.47254 * 300.00723 * 17 16 14 37 37 H 1.09002 * 109.47073 * 59.99973 * 17 16 14 38 38 H 1.08999 * 109.47538 * 299.99967 * 18 17 16 39 39 H 1.08994 * 109.47256 * 60.00250 * 18 17 16 40 40 H 1.07997 * 120.00004 * 0.02562 * 21 20 19 41 41 H 1.08005 * 119.95983 * 180.27823 * 22 21 20 42 42 H 1.08001 * 119.96041 * 179.76683 * 23 22 21 43 43 H 1.07999 * 120.04182 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.1363 -1.7853 1.2289 6 6 2.3592 0.0122 2.3585 7 7 2.7310 -0.6123 3.4545 8 14 2.2739 1.8780 2.3297 9 1 3.5443 2.4233 1.7876 10 1 1.1430 2.3086 1.4690 11 1 2.0665 2.3853 3.7099 12 7 2.0184 -0.6906 -1.1961 13 6 1.6645 -2.0932 -1.4279 14 6 2.7932 -0.0356 -2.0833 15 8 3.0865 1.1254 -1.8912 16 6 3.2961 -0.7463 -3.3134 17 6 4.1465 0.2152 -4.1460 18 6 4.6565 -0.5061 -5.3952 19 8 5.4513 0.3918 -6.1725 20 6 5.9840 -0.0948 -7.3242 21 6 5.7512 -1.4116 -7.6953 22 6 6.2889 -1.9036 -8.8686 23 6 7.0681 -1.0890 -9.6689 24 6 7.3073 0.2238 -9.2989 25 9 8.0686 1.0185 -10.0826 26 6 6.7656 0.7222 -8.1271 27 1 -0.3634 0.5974 0.8361 28 1 -0.3633 0.4254 -0.9355 29 1 -0.3634 -1.0229 0.0993 30 1 2.9613 -0.1040 4.2479 31 1 0.7377 -2.1445 -1.9992 32 1 2.4630 -2.5819 -1.9862 33 1 1.5296 -2.5969 -0.4706 34 1 3.9019 -1.6023 -3.0164 35 1 2.4486 -1.0893 -3.9068 36 1 3.5411 1.0716 -4.4430 37 1 4.9940 0.5579 -3.5524 38 1 5.2618 -1.3626 -5.0986 39 1 3.8088 -0.8483 -5.9887 40 1 5.1461 -2.0502 -7.0689 41 1 6.1037 -2.9272 -9.1592 42 1 7.4906 -1.4768 -10.5841 43 1 6.9514 1.7461 -7.8381 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069846354.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:00:43 Heat of formation + Delta-G solvation = -121.891758 kcal Electronic energy + Delta-G solvation = -24441.657669 eV Core-core repulsion = 20593.762110 eV Total energy + Delta-G solvation = -3847.895559 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.97981 -41.16588 -40.74205 -38.36840 -37.21705 -35.00726 -34.53764 -32.30565 -31.75227 -30.72207 -28.21223 -27.52389 -27.24224 -24.41563 -23.80214 -22.75174 -21.91344 -19.95662 -19.42879 -19.21345 -17.93759 -17.51609 -17.42411 -17.26304 -17.02616 -16.87232 -16.69483 -16.33974 -15.95874 -15.33240 -14.78937 -14.75250 -14.70572 -14.34218 -14.23329 -13.80505 -13.70904 -13.49109 -13.17497 -13.05909 -13.02420 -12.91678 -12.84230 -12.64872 -12.42920 -12.31484 -12.18170 -11.86071 -11.81949 -11.54860 -11.27037 -10.81703 -10.62982 -9.91753 -9.31321 -9.30745 -8.38404 -6.41482 0.10890 0.28715 1.25091 1.31761 1.39445 1.81820 1.93823 2.25895 2.44377 2.59161 3.04494 3.34300 3.64938 3.78620 3.94326 4.00029 4.01421 4.13474 4.14361 4.35763 4.41686 4.42552 4.47528 4.51894 4.54431 4.69078 4.74360 4.74605 4.87657 5.00665 5.04732 5.09460 5.10209 5.17661 5.21005 5.26920 5.34760 5.35609 5.54389 5.73547 5.84750 6.16099 6.36677 6.64494 6.81301 7.24190 7.43301 8.76769 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.027605 B = 0.002246 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.061707 B =12465.615429 C =12930.216683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.219 3.781 3 H 0.035 0.965 4 C -0.516 4.516 5 H 0.057 0.943 6 C 0.028 3.972 7 N -0.934 5.934 8 Si 0.924 3.076 9 H -0.287 1.287 10 H -0.252 1.252 11 H -0.277 1.277 12 N -0.600 5.600 13 C 0.077 3.923 14 C 0.490 3.510 15 O -0.610 6.610 16 C -0.119 4.119 17 C -0.101 4.101 18 C 0.063 3.937 19 O -0.334 6.334 20 C 0.146 3.854 21 C -0.217 4.217 22 C -0.044 4.044 23 C -0.194 4.194 24 C 0.119 3.881 25 F -0.145 7.145 26 C -0.215 4.215 27 H 0.045 0.955 28 H 0.047 0.953 29 H 0.064 0.936 30 H 0.268 0.732 31 H 0.076 0.924 32 H 0.095 0.905 33 H 0.058 0.942 34 H 0.121 0.879 35 H 0.132 0.868 36 H 0.061 0.939 37 H 0.053 0.947 38 H 0.088 0.912 39 H 0.094 0.906 40 H 0.162 0.838 41 H 0.172 0.828 42 H 0.156 0.844 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.175 -7.259 -26.968 28.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.116 3.884 3 H 0.053 0.947 4 C -0.555 4.555 5 H 0.075 0.925 6 C -0.171 4.171 7 N -0.574 5.574 8 Si 0.750 3.250 9 H -0.214 1.214 10 H -0.176 1.176 11 H -0.203 1.203 12 N -0.330 5.330 13 C -0.065 4.065 14 C 0.280 3.720 15 O -0.493 6.493 16 C -0.158 4.158 17 C -0.139 4.139 18 C -0.011 4.011 19 O -0.248 6.248 20 C 0.100 3.900 21 C -0.236 4.236 22 C -0.061 4.061 23 C -0.213 4.213 24 C 0.100 3.900 25 F -0.124 7.124 26 C -0.234 4.234 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.094 0.906 32 H 0.114 0.886 33 H 0.077 0.923 34 H 0.139 0.861 35 H 0.150 0.850 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.106 0.894 39 H 0.112 0.888 40 H 0.179 0.821 41 H 0.189 0.811 42 H 0.174 0.826 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 3.381 -6.444 -26.589 27.566 hybrid contribution 0.381 1.333 0.803 1.602 sum 3.762 -5.111 -25.785 26.555 Atomic orbital electron populations 1.22060 0.95872 1.01855 0.99854 1.19074 0.92599 0.93431 0.83321 0.94661 1.21386 1.43212 0.94879 0.96027 0.92452 1.25606 0.94275 1.01924 0.95345 1.69981 1.47117 1.37403 1.02878 0.86111 0.79399 0.82159 0.77371 1.21353 1.17568 1.20290 1.48300 1.49292 1.13573 1.21842 1.21913 1.01932 0.80220 1.02432 1.21503 0.77972 0.86795 0.85712 1.90630 1.60110 1.20070 1.78513 1.21532 1.02317 0.99178 0.92810 1.21142 0.99615 0.98645 0.94510 1.22996 0.94934 0.92053 0.91086 1.86060 1.64455 1.42122 1.32173 1.18827 0.92558 0.92736 0.85865 1.21718 1.06563 0.94328 1.00955 1.21237 0.92408 1.00878 0.91612 1.21381 1.04232 0.91867 1.03842 1.17527 0.93316 0.89723 0.89465 1.91489 1.73447 1.74086 1.73347 1.20383 1.04710 1.02131 0.96184 0.93578 0.93382 0.91743 0.92316 0.90570 0.88631 0.92290 0.86127 0.85019 0.91969 0.92843 0.89393 0.88773 0.82095 0.81059 0.82617 0.84878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.47 9.09 71.98 0.65 -4.81 16 2 C 0.22 10.22 2.27 44.25 0.10 10.32 16 3 H 0.04 1.86 4.11 -2.39 -0.01 1.86 16 4 C -0.52 -28.18 8.72 25.60 0.22 -27.96 16 5 H 0.06 3.31 6.82 -2.91 -0.02 3.29 16 6 C 0.03 1.61 5.47 84.66 0.46 2.08 16 7 N -0.93 -56.94 13.96 21.45 0.30 -56.64 16 8 Si 0.92 46.60 26.91 68.60 1.85 48.44 16 9 H -0.29 -15.11 7.11 99.48 0.71 -14.40 16 10 H -0.25 -12.05 6.73 99.48 0.67 -11.38 16 11 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 12 N -0.60 -22.73 2.75 -826.79 -2.28 -25.01 16 13 C 0.08 2.06 9.40 127.77 1.20 3.26 16 14 C 0.49 18.03 7.67 87.66 0.67 18.70 16 15 O -0.61 -28.92 15.31 -3.03 -0.05 -28.96 16 16 C -0.12 -2.56 4.25 29.85 0.13 -2.44 16 17 C -0.10 -2.36 4.87 30.59 0.15 -2.21 16 18 C 0.06 1.01 4.74 71.98 0.34 1.35 16 19 O -0.33 -7.43 10.14 -92.44 -0.94 -8.36 16 20 C 0.15 2.83 6.69 22.50 0.15 2.98 16 21 C -0.22 -2.80 9.04 22.37 0.20 -2.60 16 22 C -0.04 -0.44 10.04 22.25 0.22 -0.22 16 23 C -0.19 -2.56 10.02 22.33 0.22 -2.34 16 24 C 0.12 2.23 7.30 22.36 0.16 2.39 16 25 F -0.15 -2.99 17.27 44.97 0.78 -2.21 16 26 C -0.21 -4.46 9.97 22.41 0.22 -4.23 16 27 H 0.05 1.88 7.97 -2.39 -0.02 1.86 16 28 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.06 2.34 7.86 -2.38 -0.02 2.32 16 30 H 0.27 15.41 8.31 -92.70 -0.77 14.64 16 31 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.10 1.81 6.44 -2.38 -0.02 1.79 16 33 H 0.06 1.87 6.56 -2.38 -0.02 1.85 16 34 H 0.12 2.00 7.40 -2.39 -0.02 1.98 16 35 H 0.13 1.81 8.11 -2.39 -0.02 1.79 16 36 H 0.06 1.68 8.10 -2.39 -0.02 1.66 16 37 H 0.05 1.55 8.10 -2.39 -0.02 1.53 16 38 H 0.09 1.03 7.65 -2.39 -0.02 1.01 16 39 H 0.09 0.98 7.67 -2.39 -0.02 0.96 16 40 H 0.16 1.21 6.30 -2.91 -0.02 1.19 16 41 H 0.17 0.51 8.06 -2.91 -0.02 0.48 16 42 H 0.16 1.34 8.06 -2.91 -0.02 1.32 16 43 H 0.13 2.84 8.06 -2.91 -0.02 2.81 16 Total: -1.00 -77.10 358.68 5.76 -71.35 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: 0.98 Total: 7.12 kcal Atomic # 6 Polarization: -10.84 SS G_CDS: 5.12 Total: -5.72 kcal Atomic # 7 Polarization: -79.67 SS G_CDS: -1.98 Total: -81.65 kcal Atomic # 8 Polarization: -36.34 SS G_CDS: -0.98 Total: -37.33 kcal Atomic # 9 Polarization: -2.99 SS G_CDS: 0.78 Total: -2.21 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 1.85 Total: 48.44 kcal Total: -77.10 5.76 -71.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069846354.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.547 kcal (2) G-P(sol) polarization free energy of solvation -77.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds