Wall clock time and date at job start Fri Apr 10 2020 18:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.46503 * 119.99817 * 300.00252 * 12 2 1 14 14 C 1.34777 * 120.00371 * 119.99612 * 12 2 1 15 15 O 1.21281 * 119.99816 * 0.02562 * 14 12 2 16 16 C 1.50699 * 120.00362 * 179.97438 * 14 12 2 17 17 C 1.52992 * 109.47132 * 180.02562 * 16 14 12 18 18 C 1.53001 * 109.47364 * 180.02562 * 17 16 14 19 19 O 1.42899 * 109.47717 * 180.02562 * 18 17 16 20 20 C 1.35955 * 117.00113 * 180.02562 * 19 18 17 21 21 C 1.38654 * 120.06427 * 0.02562 * 20 19 18 22 22 C 1.38177 * 119.97224 * 179.97438 * 21 20 19 23 23 C 1.38262 * 120.09253 * 0.02562 * 22 21 20 24 24 C 1.38259 * 120.12739 * 0.02562 * 23 22 21 25 25 C 1.38335 * 120.02854 * 359.69277 * 24 23 22 26 26 F 1.35095 * 120.04947 * 180.27990 * 25 24 23 27 27 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 29 29 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 30 30 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 31 31 H 1.08994 * 109.47665 * 90.00431 * 13 12 2 32 32 H 1.09008 * 109.46786 * 210.00039 * 13 12 2 33 33 H 1.08997 * 109.47360 * 329.99480 * 13 12 2 34 34 H 1.09000 * 109.47496 * 300.00831 * 16 14 12 35 35 H 1.09000 * 109.46383 * 60.00794 * 16 14 12 36 36 H 1.08998 * 109.47625 * 300.00138 * 17 16 14 37 37 H 1.08996 * 109.47379 * 60.00532 * 17 16 14 38 38 H 1.09000 * 109.47119 * 300.00449 * 18 17 16 39 39 H 1.09000 * 109.47172 * 59.99876 * 18 17 16 40 40 H 1.08008 * 120.01768 * 359.95095 * 21 20 19 41 41 H 1.07997 * 119.95818 * 179.97438 * 22 21 20 42 42 H 1.08001 * 119.93951 * 179.97438 * 23 22 21 43 43 H 1.08002 * 119.98448 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0183 -0.6905 -1.1962 13 6 1.6643 -2.0930 -1.4282 14 6 2.7931 -0.0354 -2.0834 15 8 3.0865 1.1256 -1.8912 16 6 3.2959 -0.7459 -3.3136 17 6 4.1462 0.2157 -4.1461 18 6 4.6562 -0.5054 -5.3955 19 8 5.4510 0.3925 -6.1728 20 6 5.9838 -0.0942 -7.3250 21 6 5.7463 -1.4079 -7.6995 22 6 6.2883 -1.9005 -8.8712 23 6 7.0680 -1.0853 -9.6707 24 6 7.3083 0.2250 -9.3005 25 6 6.7633 0.7251 -8.1316 26 9 6.9932 2.0070 -7.7723 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 0.7089 1.1611 3.4845 31 1 0.7376 -2.1442 -1.9996 32 1 2.4629 -2.5817 -1.9866 33 1 1.5295 -2.5968 -0.4711 34 1 3.9016 -1.6021 -3.0168 35 1 2.4483 -1.0887 -3.9070 36 1 3.5409 1.0721 -4.4431 37 1 4.9938 0.5582 -3.5525 38 1 5.2615 -1.3620 -5.0989 39 1 3.8085 -0.8476 -5.9890 40 1 5.1381 -2.0461 -7.0755 41 1 6.1035 -2.9239 -9.1625 42 1 7.4908 -1.4730 -10.5858 43 1 7.9173 0.8598 -9.9270 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069897348.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:00:48 Heat of formation + Delta-G solvation = -100.190906 kcal Electronic energy + Delta-G solvation = -24559.519381 eV Core-core repulsion = 20712.564841 eV Total energy + Delta-G solvation = -3846.954540 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -48.95936 -40.29405 -39.15644 -37.79601 -35.44867 -33.77408 -32.78205 -31.04037 -30.27880 -29.47931 -27.11513 -26.05050 -25.22382 -23.65633 -22.75910 -21.81911 -20.62258 -18.79231 -18.17047 -17.34484 -16.90759 -16.71189 -16.53675 -16.09893 -15.68014 -15.43346 -15.15333 -14.90650 -14.69764 -14.31625 -14.00119 -13.58213 -13.13865 -12.83430 -12.64132 -12.47761 -12.38590 -12.15847 -12.05476 -11.70371 -11.57729 -11.50212 -11.42911 -11.11695 -11.02361 -10.85964 -10.69989 -10.65909 -10.27128 -10.17478 -9.30477 -9.20779 -8.95093 -8.49778 -8.43188 -7.60414 -6.08056 -4.16334 0.76951 0.92344 2.76824 3.23428 3.26623 3.32017 3.32603 3.38505 3.90273 4.00800 4.35837 4.39264 4.47126 4.75547 4.77683 4.84491 4.87551 4.98552 5.07556 5.22724 5.29592 5.32832 5.41272 5.56145 5.61877 5.70225 5.80175 5.82827 5.98996 6.01543 6.10651 6.24592 6.33975 6.38318 6.74549 6.82516 7.05673 7.06231 7.41200 7.52993 7.70711 8.00753 8.19306 8.52126 8.81999 9.04741 9.50048 10.97220 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.028758 B = 0.002210 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.418389 B =12664.159154 C =12851.168224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.257 3.743 3 H 0.063 0.937 4 C -0.527 4.527 5 H 0.058 0.942 6 C 0.064 3.936 7 N -0.887 5.887 8 Si 0.899 3.101 9 H -0.286 1.286 10 H -0.277 1.277 11 H -0.277 1.277 12 N -0.594 5.594 13 C 0.083 3.917 14 C 0.503 3.497 15 O -0.551 6.551 16 C -0.135 4.135 17 C -0.103 4.103 18 C 0.060 3.940 19 O -0.304 6.304 20 C 0.104 3.896 21 C -0.185 4.185 22 C -0.090 4.090 23 C -0.135 4.135 24 C -0.117 4.117 25 C 0.065 3.935 26 F -0.132 7.132 27 H 0.029 0.971 28 H 0.093 0.907 29 H 0.010 0.990 30 H 0.264 0.736 31 H 0.042 0.958 32 H 0.053 0.947 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.139 0.861 41 H 0.132 0.868 42 H 0.133 0.867 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.082 -8.588 -23.067 25.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.157 3.843 3 H 0.081 0.919 4 C -0.566 4.566 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.525 5.525 8 Si 0.727 3.273 9 H -0.212 1.212 10 H -0.202 1.202 11 H -0.203 1.203 12 N -0.325 5.325 13 C -0.061 4.061 14 C 0.289 3.711 15 O -0.430 6.430 16 C -0.176 4.176 17 C -0.141 4.141 18 C -0.015 4.015 19 O -0.217 6.217 20 C 0.057 3.943 21 C -0.204 4.204 22 C -0.108 4.108 23 C -0.153 4.153 24 C -0.136 4.136 25 C 0.045 3.955 26 F -0.110 7.110 27 H 0.048 0.952 28 H 0.111 0.889 29 H 0.029 0.971 30 H 0.074 0.926 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.099 0.901 34 H 0.108 0.892 35 H 0.107 0.893 36 H 0.101 0.899 37 H 0.102 0.898 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.157 0.843 41 H 0.149 0.851 42 H 0.151 0.849 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 8.139 -7.610 -22.667 25.258 hybrid contribution 0.189 -0.669 0.958 1.184 sum 8.328 -8.280 -21.710 24.682 Atomic orbital electron populations 1.22078 0.98211 0.99341 1.00783 1.18936 0.90870 0.94571 0.79957 0.91910 1.21271 1.31922 1.13030 0.90329 0.92334 1.24907 0.94953 0.94993 0.98986 1.69872 1.36235 1.22524 1.23881 0.86545 0.79236 0.79529 0.82000 1.21155 1.20250 1.20252 1.48250 1.49048 1.11629 1.23614 1.21602 0.98712 0.83364 1.02389 1.20262 0.79357 0.87176 0.84284 1.90668 1.58322 1.17187 1.76860 1.21548 1.00606 0.99420 0.95987 1.21239 1.00924 0.98730 0.93233 1.22992 0.93647 0.92536 0.92337 1.86177 1.63944 1.40493 1.31083 1.19095 0.95060 0.92636 0.87524 1.21239 1.05076 0.94159 0.99908 1.21034 0.96111 1.00098 0.93541 1.20924 1.00478 0.93088 1.00812 1.21041 1.00551 0.97003 0.95017 1.17061 1.02696 0.79788 0.95922 1.91518 1.93136 1.34632 1.91726 0.95202 0.88857 0.97059 0.92605 0.93915 0.92829 0.90105 0.89167 0.89325 0.89937 0.89842 0.91674 0.91697 0.84322 0.85050 0.84920 0.84139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.49 8.97 37.16 0.33 -3.15 16 2 C 0.26 6.56 2.64 -69.09 -0.18 6.38 16 3 H 0.06 1.87 6.90 -51.93 -0.36 1.52 16 4 C -0.53 -14.17 7.99 -34.44 -0.28 -14.44 16 5 H 0.06 1.54 7.33 -52.49 -0.38 1.15 16 6 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -25.15 11.32 55.43 0.63 -24.53 16 8 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 16 9 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 10 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 12 N -0.59 -12.43 2.75 -175.26 -0.48 -12.91 16 13 C 0.08 1.33 9.24 59.85 0.55 1.88 16 14 C 0.50 10.09 7.67 -10.99 -0.08 10.01 16 15 O -0.55 -13.54 15.31 5.56 0.09 -13.46 16 16 C -0.14 -1.81 4.25 -27.89 -0.12 -1.93 16 17 C -0.10 -1.39 4.87 -26.73 -0.13 -1.52 16 18 C 0.06 0.63 4.74 37.16 0.18 0.80 16 19 O -0.30 -3.99 10.00 -19.60 -0.20 -4.18 16 20 C 0.10 1.19 6.69 -39.18 -0.26 0.92 16 21 C -0.19 -1.59 9.04 -39.45 -0.36 -1.94 16 22 C -0.09 -0.61 10.04 -39.60 -0.40 -1.01 16 23 C -0.13 -0.90 10.04 -39.56 -0.40 -1.30 16 24 C -0.12 -0.98 10.02 -39.54 -0.40 -1.37 16 25 C 0.07 0.74 7.31 -39.30 -0.29 0.46 16 26 F -0.13 -1.76 17.11 2.25 0.04 -1.72 16 27 H 0.03 0.65 7.67 -51.93 -0.40 0.25 16 28 H 0.09 2.45 6.07 -51.93 -0.32 2.14 16 29 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 30 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 31 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.66 6.44 -51.92 -0.33 0.33 16 33 H 0.08 1.39 7.02 -51.93 -0.36 1.03 16 34 H 0.09 1.02 7.40 -51.93 -0.38 0.64 16 35 H 0.09 0.96 8.11 -51.93 -0.42 0.54 16 36 H 0.08 1.23 8.10 -51.93 -0.42 0.81 16 37 H 0.08 1.27 8.10 -51.93 -0.42 0.85 16 38 H 0.07 0.57 7.66 -51.93 -0.40 0.17 16 39 H 0.06 0.55 7.66 -51.93 -0.40 0.16 16 40 H 0.14 0.93 6.30 -52.48 -0.33 0.60 16 41 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 42 H 0.13 0.53 8.06 -52.49 -0.42 0.11 16 43 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 LS Contribution 359.70 15.07 5.42 5.42 Total: -1.00 -32.91 359.70 -7.62 -40.54 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: -6.18 Total: -0.54 kcal Atomic # 6 Polarization: -2.65 SS G_CDS: -1.92 Total: -4.57 kcal Atomic # 7 Polarization: -37.58 SS G_CDS: 0.15 Total: -37.44 kcal Atomic # 8 Polarization: -17.53 SS G_CDS: -0.11 Total: -17.64 kcal Atomic # 9 Polarization: -1.76 SS G_CDS: 0.04 Total: -1.72 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.91 -7.62 -40.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069897348.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.654 kcal (2) G-P(sol) polarization free energy of solvation -32.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds