Wall clock time and date at job start Fri Apr 10 2020 18:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34231 * 117.00292 * 2 1 4 4 O 1.20823 * 119.99757 * 359.97438 * 3 2 1 5 5 C 1.50697 * 119.99827 * 179.97438 * 3 2 1 6 6 N 1.46504 * 109.46974 * 180.02562 * 5 3 2 7 7 C 1.37102 * 119.99703 * 264.45723 * 6 5 3 8 8 H 1.07997 * 119.99872 * 192.35185 * 7 6 5 9 9 C 1.38948 * 120.00028 * 12.34946 * 7 6 5 10 10 N 1.31410 * 120.00145 * 20.81119 * 9 7 6 11 11 Si 1.86796 * 120.00124 * 200.80599 * 9 7 6 12 12 H 1.48500 * 109.46984 * 84.98711 * 11 9 7 13 13 H 1.48504 * 109.47529 * 204.98949 * 11 9 7 14 14 H 1.48505 * 109.47243 * 324.98735 * 11 9 7 15 15 C 1.34776 * 120.00308 * 84.45215 * 6 5 3 16 16 O 1.21288 * 119.99955 * 0.02562 * 15 6 5 17 17 C 1.50699 * 119.99827 * 180.02562 * 15 6 5 18 18 C 1.50701 * 109.46722 * 179.97438 * 17 15 6 19 19 C 1.39874 * 125.89302 * 125.00349 * 18 17 15 20 20 C 1.35326 * 107.91515 * 179.71678 * 19 18 17 21 21 N 1.34945 * 107.74775 * 0.42166 * 20 19 18 22 22 C 1.46495 * 126.03560 * 179.83703 * 21 20 19 23 23 C 1.53004 * 109.46856 * 84.71946 * 22 21 20 24 24 C 1.52995 * 109.47569 * 324.71589 * 22 21 20 25 25 N 1.30838 * 125.90476 * 304.97844 * 18 17 15 26 26 H 1.09000 * 109.47095 * 300.00517 * 1 2 3 27 27 H 1.08996 * 109.47043 * 59.99983 * 1 2 3 28 28 H 1.08996 * 109.47418 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47487 * 59.99958 * 5 3 2 30 30 H 1.09004 * 109.47104 * 299.99418 * 5 3 2 31 31 H 0.97005 * 120.00604 * 180.02562 * 10 9 7 32 32 H 1.08998 * 109.47222 * 60.00613 * 17 15 6 33 33 H 1.08994 * 109.47430 * 300.00159 * 17 15 6 34 34 H 1.08000 * 126.04596 * 359.97438 * 19 18 17 35 35 H 1.08002 * 126.12329 * 180.26437 * 20 19 18 36 36 H 1.09004 * 109.46959 * 204.71582 * 22 21 20 37 37 H 1.09002 * 109.47152 * 179.97438 * 23 22 21 38 38 H 1.08995 * 109.47014 * 299.99388 * 23 22 21 39 39 H 1.09003 * 109.47381 * 59.99885 * 23 22 21 40 40 H 1.09004 * 109.46985 * 60.00009 * 24 22 21 41 41 H 1.09002 * 109.47225 * 179.97438 * 24 22 21 42 42 H 1.08991 * 109.47444 * 300.00372 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2747 0.0006 6 7 3.9818 2.6796 0.0011 7 6 4.2866 3.3047 -1.1805 8 1 4.7795 4.2656 -1.1715 9 6 3.9614 2.7019 -2.3894 10 7 3.0310 1.7749 -2.4321 11 14 4.8466 3.2094 -3.9541 12 1 6.1136 2.4445 -4.0762 13 1 3.9814 2.9246 -5.1270 14 1 5.1485 4.6625 -3.9030 15 6 4.0643 3.3576 1.1630 16 8 3.7950 2.8045 2.2083 17 6 4.4911 4.8029 1.1633 18 6 4.5008 5.3234 2.5775 19 6 5.5858 5.9268 3.2219 20 6 5.1942 6.2590 4.4739 21 7 3.9101 5.8709 4.6198 22 6 3.0918 6.0344 5.8239 23 6 2.4679 7.4315 5.8306 24 6 3.9701 5.8621 7.0647 25 7 3.4958 5.2894 3.4146 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 3.9564 0.7804 -0.8891 30 1 3.9557 0.7808 0.8909 31 1 2.8042 1.3537 -3.2760 32 1 3.7921 5.3883 0.5660 33 1 5.4912 4.8865 0.7381 34 1 6.5622 6.1009 2.7943 35 1 5.8016 6.7452 5.2230 36 1 2.3017 5.2836 5.8310 37 1 1.8587 7.5531 6.7263 38 1 3.2580 8.1823 5.8236 39 1 1.8421 7.5542 4.9466 40 1 4.7603 6.6130 7.0577 41 1 3.3614 5.9843 7.9606 42 1 4.4146 4.8670 7.0600 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080391494.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:00:56 Heat of formation + Delta-G solvation = -28.873190 kcal Electronic energy + Delta-G solvation = -26119.540272 eV Core-core repulsion = 22295.598262 eV Total energy + Delta-G solvation = -3823.942010 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.152 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.83558 -39.35076 -38.13781 -35.80567 -35.25395 -34.51317 -31.55900 -31.35351 -29.53710 -28.77605 -27.49286 -27.23724 -25.97743 -24.48900 -22.53156 -20.60062 -19.78800 -19.52148 -18.88190 -17.06138 -16.67304 -16.48539 -16.16566 -15.37357 -15.16202 -14.97633 -14.48924 -14.31371 -14.17695 -14.01964 -13.42370 -13.23496 -12.96260 -12.63087 -12.52453 -12.45362 -12.26150 -12.17395 -11.82513 -11.58357 -11.40968 -11.31775 -11.28589 -11.18998 -10.97420 -10.71704 -10.45793 -10.36407 -9.96708 -9.75786 -9.52069 -8.92581 -8.77220 -8.45154 -8.10246 -7.91618 -6.44441 -3.91334 2.35147 2.81892 3.12559 3.21830 3.24310 3.30082 3.58501 3.77422 4.09257 4.14948 4.48805 4.77898 4.78831 4.96362 5.01231 5.06993 5.24129 5.28346 5.42782 5.48906 5.68886 5.75102 5.78722 5.83669 5.93161 5.99691 6.00875 6.09427 6.16064 6.29243 6.31250 6.36938 6.55533 6.59744 6.81690 7.14022 7.39667 7.44668 7.52808 7.65924 8.29469 8.31756 9.03887 9.18026 9.45206 9.86924 10.62370 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.014884 B = 0.004199 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.793358 B = 6665.898754 C = 8026.341385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.375 6.375 3 C 0.484 3.516 4 O -0.503 6.503 5 C 0.156 3.844 6 N -0.435 5.435 7 C -0.331 4.331 8 H 0.106 0.894 9 C 0.034 3.966 10 N -0.874 5.874 11 Si 0.926 3.074 12 H -0.276 1.276 13 H -0.286 1.286 14 H -0.270 1.270 15 C 0.477 3.523 16 O -0.585 6.585 17 C -0.043 4.043 18 C 0.097 3.903 19 C -0.268 4.268 20 C 0.041 3.959 21 N -0.375 5.375 22 C 0.156 3.844 23 C -0.163 4.163 24 C -0.162 4.162 25 N -0.258 5.258 26 H 0.049 0.951 27 H 0.054 0.946 28 H 0.085 0.915 29 H 0.131 0.869 30 H 0.078 0.922 31 H 0.272 0.728 32 H 0.101 0.899 33 H 0.100 0.900 34 H 0.143 0.857 35 H 0.163 0.837 36 H 0.100 0.900 37 H 0.072 0.928 38 H 0.060 0.940 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.077 0.923 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.668 5.476 10.509 12.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.293 6.293 3 C 0.326 3.674 4 O -0.387 6.387 5 C 0.030 3.970 6 N -0.155 5.155 7 C -0.458 4.458 8 H 0.124 0.876 9 C -0.170 4.170 10 N -0.513 5.513 11 Si 0.753 3.247 12 H -0.202 1.202 13 H -0.211 1.211 14 H -0.194 1.194 15 C 0.265 3.735 16 O -0.469 6.469 17 C -0.084 4.084 18 C -0.071 4.071 19 C -0.298 4.298 20 C -0.105 4.105 21 N -0.158 5.158 22 C 0.053 3.947 23 C -0.221 4.221 24 C -0.220 4.220 25 N -0.078 5.078 26 H 0.068 0.932 27 H 0.073 0.927 28 H 0.103 0.897 29 H 0.149 0.851 30 H 0.096 0.904 31 H 0.083 0.917 32 H 0.119 0.881 33 H 0.119 0.881 34 H 0.161 0.839 35 H 0.181 0.819 36 H 0.118 0.882 37 H 0.091 0.909 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.096 0.904 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.905 5.072 11.190 12.319 hybrid contribution 0.852 0.567 -1.165 1.551 sum 1.756 5.639 10.025 11.636 Atomic orbital electron populations 1.22922 0.78897 1.01734 1.01586 1.86465 1.21549 1.35620 1.85678 1.24118 0.92435 0.80474 0.70401 1.90519 1.66585 1.36404 1.45227 1.20608 0.86931 0.85708 1.03756 1.43432 1.57817 1.08293 1.05969 1.19697 1.37591 1.06183 0.82299 0.87597 1.25186 0.95282 0.97025 0.99462 1.69877 1.26249 1.27474 1.27718 0.85947 0.79113 0.79120 0.80506 1.20161 1.21130 1.19441 1.19886 0.82034 0.87831 0.83732 1.90574 1.54602 1.69881 1.31858 1.19857 1.03842 0.95022 0.89709 1.21886 0.91535 0.97653 0.96025 1.21334 1.00981 1.12338 0.95109 1.22244 0.87409 1.02232 0.98573 1.48855 1.09301 1.46384 1.11308 1.21127 0.93519 0.98858 0.81158 1.22229 1.01320 0.95510 1.03039 1.22167 1.00306 1.03140 0.96389 1.77564 1.22914 1.16769 0.90599 0.93206 0.92678 0.89654 0.85112 0.90373 0.91739 0.88081 0.88137 0.83945 0.81933 0.88180 0.90882 0.92132 0.91582 0.91768 0.90368 0.91443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.80 10.56 101.05 1.07 1.86 16 2 O -0.38 -8.52 10.56 -39.26 -0.41 -8.93 16 3 C 0.48 12.57 6.25 36.00 0.23 12.79 16 4 O -0.50 -14.58 16.00 -18.75 -0.30 -14.88 16 5 C 0.16 3.88 5.15 -5.19 -0.03 3.86 16 6 N -0.44 -11.17 2.17 -116.09 -0.25 -11.42 16 7 C -0.33 -8.27 9.23 -14.93 -0.14 -8.41 16 8 H 0.11 2.44 6.48 -52.49 -0.34 2.10 16 9 C 0.03 0.85 4.95 -17.47 -0.09 0.76 16 10 N -0.87 -22.77 9.26 55.50 0.51 -22.26 16 11 Si 0.93 19.17 29.60 -169.99 -5.03 14.14 16 12 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 13 H -0.29 -6.04 7.11 56.52 0.40 -5.64 16 14 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 15 C 0.48 12.07 7.43 -10.99 -0.08 11.99 16 16 O -0.59 -16.32 15.23 5.55 0.08 -16.23 16 17 C -0.04 -0.90 4.68 -29.03 -0.14 -1.04 16 18 C 0.10 1.98 6.01 -82.40 -0.50 1.48 16 19 C -0.27 -4.43 10.72 -40.01 -0.43 -4.85 16 20 C 0.04 0.59 10.59 -17.22 -0.18 0.41 16 21 N -0.38 -6.19 3.52 -54.86 -0.19 -6.38 16 22 C 0.16 1.91 3.93 -67.93 -0.27 1.64 16 23 C -0.16 -1.63 9.52 37.16 0.35 -1.28 16 24 C -0.16 -1.44 8.84 37.16 0.33 -1.11 16 25 N -0.26 -5.55 11.92 33.67 0.40 -5.15 16 26 H 0.05 0.90 8.13 -51.93 -0.42 0.48 16 27 H 0.05 1.04 8.13 -51.93 -0.42 0.62 16 28 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.13 3.22 6.05 -51.93 -0.31 2.91 16 30 H 0.08 1.85 7.59 -51.93 -0.39 1.45 16 31 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 32 H 0.10 2.13 8.07 -51.93 -0.42 1.71 16 33 H 0.10 1.82 7.72 -51.93 -0.40 1.42 16 34 H 0.14 1.95 8.06 -52.49 -0.42 1.53 16 35 H 0.16 1.64 7.27 -52.49 -0.38 1.26 16 36 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.06 0.49 7.16 -51.93 -0.37 0.12 16 41 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 357.44 15.07 5.39 5.39 Total: -1.00 -35.17 357.44 -5.66 -40.83 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -5.98 Total: 6.81 kcal Atomic # 6 Polarization: 17.97 SS G_CDS: 0.13 Total: 18.10 kcal Atomic # 7 Polarization: -45.68 SS G_CDS: 0.47 Total: -45.21 kcal Atomic # 8 Polarization: -39.42 SS G_CDS: -0.63 Total: -40.05 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -5.03 Total: 14.14 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -35.17 -5.66 -40.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080391494.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.954 kcal (2) G-P(sol) polarization free energy of solvation -35.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds