Wall clock time and date at job start Fri Apr 10 2020 18:00:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34231 * 117.00292 * 2 1 4 4 O 1.20823 * 119.99757 * 359.97438 * 3 2 1 5 5 C 1.50697 * 119.99827 * 179.97438 * 3 2 1 6 6 N 1.46504 * 109.46974 * 180.02562 * 5 3 2 7 7 C 1.37102 * 119.99703 * 264.45723 * 6 5 3 8 8 H 1.07997 * 119.99872 * 192.35185 * 7 6 5 9 9 C 1.38948 * 120.00028 * 12.34946 * 7 6 5 10 10 N 1.31410 * 120.00145 * 20.81119 * 9 7 6 11 11 Si 1.86796 * 120.00124 * 200.80599 * 9 7 6 12 12 H 1.48500 * 109.46984 * 84.98711 * 11 9 7 13 13 H 1.48504 * 109.47529 * 204.98949 * 11 9 7 14 14 H 1.48505 * 109.47243 * 324.98735 * 11 9 7 15 15 C 1.34776 * 120.00308 * 84.45215 * 6 5 3 16 16 O 1.21288 * 119.99955 * 0.02562 * 15 6 5 17 17 C 1.50699 * 119.99827 * 180.02562 * 15 6 5 18 18 C 1.50701 * 109.46722 * 179.97438 * 17 15 6 19 19 C 1.39874 * 125.89302 * 125.00349 * 18 17 15 20 20 C 1.35326 * 107.91515 * 179.71678 * 19 18 17 21 21 N 1.34945 * 107.74775 * 0.42166 * 20 19 18 22 22 C 1.46495 * 126.03560 * 179.83703 * 21 20 19 23 23 C 1.53004 * 109.46856 * 84.71946 * 22 21 20 24 24 C 1.52995 * 109.47569 * 324.71589 * 22 21 20 25 25 N 1.30838 * 125.90476 * 304.97844 * 18 17 15 26 26 H 1.09000 * 109.47095 * 300.00517 * 1 2 3 27 27 H 1.08996 * 109.47043 * 59.99983 * 1 2 3 28 28 H 1.08996 * 109.47418 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47487 * 59.99958 * 5 3 2 30 30 H 1.09004 * 109.47104 * 299.99418 * 5 3 2 31 31 H 0.97005 * 120.00604 * 180.02562 * 10 9 7 32 32 H 1.08998 * 109.47222 * 60.00613 * 17 15 6 33 33 H 1.08994 * 109.47430 * 300.00159 * 17 15 6 34 34 H 1.08000 * 126.04596 * 359.97438 * 19 18 17 35 35 H 1.08002 * 126.12329 * 180.26437 * 20 19 18 36 36 H 1.09004 * 109.46959 * 204.71582 * 22 21 20 37 37 H 1.09002 * 109.47152 * 179.97438 * 23 22 21 38 38 H 1.08995 * 109.47014 * 299.99388 * 23 22 21 39 39 H 1.09003 * 109.47381 * 59.99885 * 23 22 21 40 40 H 1.09004 * 109.46985 * 60.00009 * 24 22 21 41 41 H 1.09002 * 109.47225 * 179.97438 * 24 22 21 42 42 H 1.08991 * 109.47444 * 300.00372 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2747 0.0006 6 7 3.9818 2.6796 0.0011 7 6 4.2866 3.3047 -1.1805 8 1 4.7795 4.2656 -1.1715 9 6 3.9614 2.7019 -2.3894 10 7 3.0310 1.7749 -2.4321 11 14 4.8466 3.2094 -3.9541 12 1 6.1136 2.4445 -4.0762 13 1 3.9814 2.9246 -5.1270 14 1 5.1485 4.6625 -3.9030 15 6 4.0643 3.3576 1.1630 16 8 3.7950 2.8045 2.2083 17 6 4.4911 4.8029 1.1633 18 6 4.5008 5.3234 2.5775 19 6 5.5858 5.9268 3.2219 20 6 5.1942 6.2590 4.4739 21 7 3.9101 5.8709 4.6198 22 6 3.0918 6.0344 5.8239 23 6 2.4679 7.4315 5.8306 24 6 3.9701 5.8621 7.0647 25 7 3.4958 5.2894 3.4146 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 3.9564 0.7804 -0.8891 30 1 3.9557 0.7808 0.8909 31 1 2.8042 1.3537 -3.2760 32 1 3.7921 5.3883 0.5660 33 1 5.4912 4.8865 0.7381 34 1 6.5622 6.1009 2.7943 35 1 5.8016 6.7452 5.2230 36 1 2.3017 5.2836 5.8310 37 1 1.8587 7.5531 6.7263 38 1 3.2580 8.1823 5.8236 39 1 1.8421 7.5542 4.9466 40 1 4.7603 6.6130 7.0577 41 1 3.3614 5.9843 7.9606 42 1 4.4146 4.8670 7.0600 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080391494.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:00:55 Heat of formation + Delta-G solvation = -51.480609 kcal Electronic energy + Delta-G solvation = -26120.520604 eV Core-core repulsion = 22295.598262 eV Total energy + Delta-G solvation = -3824.922341 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.152 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.12847 -41.31150 -40.04455 -37.35633 -36.74386 -36.46417 -33.47339 -32.86076 -30.83598 -30.46611 -28.80434 -28.18773 -27.69875 -26.36790 -23.66887 -22.39801 -21.29947 -20.92517 -20.54946 -18.76870 -18.46673 -18.07784 -17.87156 -17.27046 -16.97780 -16.24858 -16.15340 -15.94482 -15.71349 -15.32992 -14.76825 -14.52484 -14.45819 -14.21561 -14.12759 -13.68436 -13.50830 -13.32195 -13.16847 -13.13019 -13.00318 -12.90279 -12.71860 -12.48314 -12.34018 -12.29109 -12.04925 -12.03678 -11.61901 -11.54049 -11.32723 -10.90901 -10.48730 -10.06453 -9.89109 -9.36449 -8.34251 -5.88207 1.11726 1.46282 1.53372 1.63704 1.68640 1.71060 1.78999 1.93008 2.28341 2.36759 2.96652 3.16020 3.55237 3.89719 3.97838 4.00993 4.10648 4.23023 4.31300 4.34626 4.37364 4.37650 4.58114 4.62920 4.65950 4.67707 4.71595 4.79068 4.82530 4.87609 4.92084 4.98186 5.15647 5.20735 5.28656 5.47020 5.60311 5.71333 5.81003 6.36216 6.36672 6.97831 7.09947 7.18310 7.51580 7.93173 8.72882 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.014884 B = 0.004199 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.793358 B = 6665.898754 C = 8026.341385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.376 6.376 3 C 0.486 3.514 4 O -0.543 6.543 5 C 0.153 3.847 6 N -0.443 5.443 7 C -0.351 4.351 8 H 0.123 0.877 9 C -0.008 4.008 10 N -0.904 5.904 11 Si 1.000 3.000 12 H -0.266 1.266 13 H -0.293 1.293 14 H -0.258 1.258 15 C 0.463 3.537 16 O -0.620 6.620 17 C -0.034 4.034 18 C 0.069 3.931 19 C -0.283 4.283 20 C 0.059 3.941 21 N -0.374 5.374 22 C 0.141 3.859 23 C -0.153 4.153 24 C -0.152 4.152 25 N -0.324 5.324 26 H 0.047 0.953 27 H 0.046 0.954 28 H 0.136 0.864 29 H 0.132 0.868 30 H 0.083 0.917 31 H 0.272 0.728 32 H 0.092 0.908 33 H 0.128 0.872 34 H 0.169 0.831 35 H 0.215 0.785 36 H 0.076 0.924 37 H 0.103 0.897 38 H 0.074 0.926 39 H 0.037 0.963 40 H 0.086 0.914 41 H 0.105 0.895 42 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.272 6.798 11.405 13.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.293 6.293 3 C 0.329 3.671 4 O -0.431 6.431 5 C 0.027 3.973 6 N -0.162 5.162 7 C -0.477 4.477 8 H 0.140 0.860 9 C -0.209 4.209 10 N -0.543 5.543 11 Si 0.824 3.176 12 H -0.191 1.191 13 H -0.219 1.219 14 H -0.182 1.182 15 C 0.253 3.747 16 O -0.507 6.507 17 C -0.075 4.075 18 C -0.097 4.097 19 C -0.312 4.312 20 C -0.087 4.087 21 N -0.158 5.158 22 C 0.040 3.960 23 C -0.211 4.211 24 C -0.210 4.210 25 N -0.147 5.147 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.154 0.846 29 H 0.149 0.851 30 H 0.101 0.899 31 H 0.082 0.918 32 H 0.110 0.890 33 H 0.146 0.854 34 H 0.187 0.813 35 H 0.232 0.768 36 H 0.095 0.905 37 H 0.121 0.879 38 H 0.093 0.907 39 H 0.056 0.944 40 H 0.105 0.895 41 H 0.124 0.876 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.507 6.376 12.087 13.894 hybrid contribution 0.226 0.091 -1.348 1.370 sum 2.733 6.467 10.739 12.831 Atomic orbital electron populations 1.23300 0.76278 1.04947 1.01090 1.86430 1.24087 1.33821 1.84966 1.24271 0.92834 0.80688 0.69284 1.90487 1.67493 1.37817 1.47310 1.20664 0.86737 0.86092 1.03826 1.43698 1.57516 1.08511 1.06518 1.20184 1.38061 1.07138 0.82343 0.85992 1.26137 0.95404 0.96876 1.02466 1.69991 1.27339 1.28577 1.28394 0.84829 0.77731 0.79354 0.75721 1.19096 1.21907 1.18228 1.20650 0.81585 0.89368 0.83123 1.90526 1.56153 1.71014 1.32984 1.19783 1.04771 0.91823 0.91121 1.21973 0.93068 0.98916 0.95736 1.21683 1.01226 1.12539 0.95786 1.23002 0.86597 1.00221 0.98843 1.49208 1.10501 1.45260 1.10813 1.21556 0.93718 0.99559 0.81158 1.22173 1.01571 0.94251 1.03147 1.22149 1.00627 1.02908 0.95302 1.77425 1.24912 1.19312 0.93009 0.93400 0.93543 0.84553 0.85059 0.89925 0.91826 0.89036 0.85402 0.81337 0.76822 0.90542 0.87874 0.90652 0.94419 0.89518 0.87596 0.93013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.36 10.56 113.37 1.20 2.56 16 2 O -0.38 -17.28 10.56 -51.43 -0.54 -17.83 16 3 C 0.49 26.04 6.25 71.24 0.45 26.49 16 4 O -0.54 -32.78 16.00 21.97 0.35 -32.43 16 5 C 0.15 7.87 5.15 85.63 0.44 8.31 16 6 N -0.44 -23.42 2.17 -639.60 -1.39 -24.81 16 7 C -0.35 -17.72 9.23 84.04 0.78 -16.94 16 8 H 0.12 5.58 6.48 -2.91 -0.02 5.56 16 9 C -0.01 -0.40 4.95 84.93 0.42 0.02 16 10 N -0.90 -47.77 9.26 21.66 0.20 -47.57 16 11 Si 1.00 38.92 29.60 68.60 2.03 40.95 16 12 H -0.27 -9.88 7.11 99.48 0.71 -9.17 16 13 H -0.29 -11.67 7.11 99.48 0.71 -10.97 16 14 H -0.26 -9.52 7.11 99.48 0.71 -8.81 16 15 C 0.46 24.29 7.43 87.66 0.65 24.95 16 16 O -0.62 -36.17 15.23 -3.05 -0.05 -36.22 16 17 C -0.03 -1.46 4.68 29.10 0.14 -1.32 16 18 C 0.07 2.88 6.01 43.10 0.26 3.14 16 19 C -0.28 -8.94 10.72 21.99 0.24 -8.71 16 20 C 0.06 1.57 10.59 83.54 0.89 2.46 16 21 N -0.37 -12.14 3.52 -327.49 -1.15 -13.29 16 22 C 0.14 3.32 3.93 44.99 0.18 3.50 16 23 C -0.15 -2.82 9.52 71.98 0.69 -2.13 16 24 C -0.15 -2.25 8.84 71.98 0.64 -1.62 16 25 N -0.32 -14.43 11.92 -47.38 -0.56 -15.00 16 26 H 0.05 1.75 8.13 -2.39 -0.02 1.73 16 27 H 0.05 1.76 8.13 -2.39 -0.02 1.74 16 28 H 0.14 3.52 8.14 -2.39 -0.02 3.50 16 29 H 0.13 6.68 6.05 -2.39 -0.01 6.66 16 30 H 0.08 4.08 7.59 -2.38 -0.02 4.06 16 31 H 0.27 13.70 8.31 -92.70 -0.77 12.93 16 32 H 0.09 4.03 8.07 -2.39 -0.02 4.01 16 33 H 0.13 4.61 7.72 -2.39 -0.02 4.59 16 34 H 0.17 4.20 8.06 -2.91 -0.02 4.17 16 35 H 0.22 3.23 7.27 -2.91 -0.02 3.21 16 36 H 0.08 2.12 8.14 -2.38 -0.02 2.10 16 37 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.09 0.91 7.16 -2.38 -0.02 0.89 16 41 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -80.94 357.44 6.85 -74.08 By element: Atomic # 1 Polarization: 30.38 SS G_CDS: 1.02 Total: 31.40 kcal Atomic # 6 Polarization: 33.75 SS G_CDS: 6.95 Total: 40.70 kcal Atomic # 7 Polarization: -97.76 SS G_CDS: -2.91 Total: -100.66 kcal Atomic # 8 Polarization: -86.23 SS G_CDS: -0.24 Total: -86.47 kcal Atomic # 14 Polarization: 38.92 SS G_CDS: 2.03 Total: 40.95 kcal Total: -80.94 6.85 -74.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080391494.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.603 kcal (2) G-P(sol) polarization free energy of solvation -80.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds