Wall clock time and date at job start Fri Apr 10 2020 18:00:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34224 * 117.00260 * 2 1 4 4 O 1.20828 * 120.00036 * 359.97438 * 3 2 1 5 5 C 1.50704 * 119.99854 * 180.02562 * 3 2 1 6 6 N 1.46501 * 109.46687 * 183.82246 * 5 3 2 7 7 C 1.36940 * 119.99878 * 90.84125 * 6 5 3 8 8 H 1.08005 * 120.00048 * 168.80677 * 7 6 5 9 9 C 1.38815 * 119.99931 * 348.80266 * 7 6 5 10 10 N 1.31621 * 120.00086 * 327.88681 * 9 7 6 11 11 Si 1.86798 * 120.00078 * 147.88762 * 9 7 6 12 12 H 1.48500 * 109.47449 * 94.98888 * 11 9 7 13 13 H 1.48500 * 109.47372 * 214.99121 * 11 9 7 14 14 H 1.48501 * 109.47106 * 334.98870 * 11 9 7 15 15 C 1.46496 * 120.00382 * 270.83485 * 6 5 3 16 16 C 1.50705 * 109.47065 * 274.10201 * 15 6 5 17 17 O 1.21282 * 119.99859 * 354.90159 * 16 15 6 18 18 N 1.34779 * 119.99733 * 174.90528 * 16 15 6 19 19 C 1.46504 * 119.99493 * 180.02562 * 18 16 15 20 20 C 1.52999 * 109.47541 * 59.99746 * 19 18 16 21 21 C 1.47201 * 109.46836 * 299.99478 * 19 18 16 22 22 N 8.97925 * 147.35414 * 340.29565 * 2 1 3 23 23 C 1.53005 * 109.46507 * 180.02562 * 19 18 16 24 24 C 1.52993 * 117.51749 * 116.28410 * 23 19 18 25 25 C 1.53001 * 117.49328 * 184.91406 * 23 19 18 26 26 H 1.09004 * 109.46877 * 59.99947 * 1 2 3 27 27 H 1.08998 * 109.47735 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46894 * 300.00690 * 1 2 3 29 29 H 1.08995 * 109.47563 * 63.82662 * 5 3 2 30 30 H 1.08994 * 109.46917 * 303.81762 * 5 3 2 31 31 H 0.96996 * 120.00035 * 180.02562 * 10 9 7 32 32 H 1.08994 * 109.47380 * 154.10318 * 15 6 5 33 33 H 1.08996 * 109.46795 * 34.09892 * 15 6 5 34 34 H 0.96994 * 119.99973 * 359.97438 * 18 16 15 35 35 H 1.08992 * 109.46845 * 179.97438 * 20 19 18 36 36 H 1.09002 * 109.46683 * 299.99956 * 20 19 18 37 37 H 1.09003 * 109.46917 * 59.99755 * 20 19 18 38 38 H 1.08995 * 115.54969 * 330.57039 * 23 19 18 39 39 H 1.09003 * 117.49620 * 214.96453 * 24 23 19 40 40 H 1.09000 * 117.50465 * 359.97438 * 24 23 19 41 41 H 1.09000 * 117.50284 * 359.97246 * 25 23 19 42 42 H 1.09003 * 117.49888 * 144.99676 * 25 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2747 -0.0006 6 7 3.9820 2.6765 0.0916 7 6 4.1975 3.2475 1.3175 8 1 4.6737 4.2144 1.3866 9 6 3.8038 2.5836 2.4713 10 7 2.7416 1.8066 2.4535 11 14 4.7815 2.7930 4.0491 12 1 4.1633 3.8599 4.8767 13 1 4.7793 1.5155 4.8061 14 1 6.1794 3.1702 3.7189 15 6 4.1671 3.4674 -1.1275 16 6 5.5635 3.2586 -1.6545 17 8 6.3580 2.5963 -1.0212 18 7 5.9295 3.8080 -2.8296 19 6 7.2868 3.6046 -3.3421 20 6 7.5387 2.1084 -3.5392 21 6 8.2608 4.1435 -2.3789 22 7 9.0127 4.5602 -1.6332 23 6 7.4401 4.3290 -4.6810 24 6 8.4506 5.4755 -4.7528 25 6 8.7563 4.1423 -5.4384 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5140 0.8899 29 1 3.9526 0.8412 -0.9230 30 1 3.9594 0.7224 0.8529 31 1 2.4663 1.3431 3.2598 32 1 4.0181 4.5232 -0.9018 33 1 3.4441 3.1509 -1.8792 34 1 5.2940 4.3375 -3.3362 35 1 8.5483 1.9572 -3.9209 36 1 7.4295 1.5929 -2.5851 37 1 6.8173 1.7094 -4.2524 38 1 6.5288 4.4235 -5.2714 39 1 8.2040 6.3245 -5.3905 40 1 9.0061 5.7143 -3.8459 41 1 9.5131 3.5039 -4.9827 42 1 8.7109 4.1142 -6.5272 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080872072.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:00:59 Heat of formation + Delta-G solvation = -22.064224 kcal Electronic energy + Delta-G solvation = -26249.332726 eV Core-core repulsion = 22425.685974 eV Total energy + Delta-G solvation = -3823.646751 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.152 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.19954 -38.99272 -38.11783 -35.83565 -35.60846 -34.54661 -34.11398 -31.61166 -30.53919 -28.47501 -26.85468 -25.94705 -25.01444 -22.66560 -22.34723 -21.99626 -20.18929 -19.58039 -17.79270 -17.02915 -16.92085 -16.34419 -15.93602 -15.48643 -15.12344 -14.94404 -14.68764 -14.48681 -14.30520 -13.69296 -13.43856 -13.19675 -13.07285 -12.93894 -12.53110 -12.36993 -12.24930 -12.17370 -11.87077 -11.63109 -11.46994 -11.38971 -11.15467 -10.99429 -10.81538 -10.72111 -10.54550 -10.51234 -10.18801 -9.94677 -9.63291 -9.50507 -9.09658 -9.04267 -8.47216 -7.18469 -5.99007 -3.19616 2.57489 2.87433 3.13470 3.33947 3.39210 3.48072 3.54482 3.58459 3.81983 3.94568 4.02897 4.32177 4.49483 4.55531 4.63664 4.94100 5.09516 5.19527 5.27787 5.33360 5.49538 5.54954 5.65458 5.74041 5.74785 5.79168 5.81272 5.84204 5.99395 6.09225 6.15627 6.24570 6.25722 6.56019 6.62488 6.91347 7.61457 7.66285 7.74279 7.78715 8.06823 8.72498 8.94940 9.33341 9.65373 10.04374 11.12369 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.015353 B = 0.004289 C = 0.003578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.320392 B = 6526.267457 C = 7824.154502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.381 6.381 3 C 0.466 3.534 4 O -0.505 6.505 5 C 0.191 3.809 6 N -0.540 5.540 7 C -0.258 4.258 8 H 0.079 0.921 9 C 0.011 3.989 10 N -0.886 5.886 11 Si 0.895 3.105 12 H -0.289 1.289 13 H -0.287 1.287 14 H -0.277 1.277 15 C 0.136 3.864 16 C 0.479 3.521 17 O -0.505 6.505 18 N -0.733 5.733 19 C 0.308 3.692 20 C -0.159 4.159 21 C 0.209 3.791 22 N -0.420 5.420 23 C -0.157 4.157 24 C -0.181 4.181 25 C -0.164 4.164 26 H 0.045 0.955 27 H 0.080 0.920 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.104 0.896 31 H 0.258 0.742 32 H 0.089 0.911 33 H 0.072 0.928 34 H 0.404 0.596 35 H 0.067 0.933 36 H 0.089 0.911 37 H 0.077 0.923 38 H 0.130 0.870 39 H 0.102 0.898 40 H 0.095 0.905 41 H 0.098 0.902 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.561 0.365 -18.231 18.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.299 6.299 3 C 0.306 3.694 4 O -0.390 6.390 5 C 0.061 3.939 6 N -0.256 5.256 7 C -0.386 4.386 8 H 0.097 0.903 9 C -0.188 4.188 10 N -0.529 5.529 11 Si 0.724 3.276 12 H -0.216 1.216 13 H -0.213 1.213 14 H -0.203 1.203 15 C 0.003 3.997 16 C 0.264 3.736 17 O -0.377 6.377 18 N -0.391 5.391 19 C 0.217 3.783 20 C -0.218 4.218 21 C -0.110 4.110 22 N -0.096 5.096 23 C -0.176 4.176 24 C -0.218 4.218 25 C -0.201 4.201 26 H 0.064 0.936 27 H 0.098 0.902 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.122 0.878 31 H 0.068 0.932 32 H 0.107 0.893 33 H 0.090 0.910 34 H 0.240 0.760 35 H 0.086 0.914 36 H 0.108 0.892 37 H 0.096 0.904 38 H 0.148 0.852 39 H 0.121 0.879 40 H 0.114 0.886 41 H 0.116 0.884 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 4.932 0.708 -16.396 17.136 hybrid contribution -0.503 0.339 0.579 0.838 sum 4.429 1.046 -15.817 16.459 Atomic orbital electron populations 1.22856 0.79689 1.01312 1.01297 1.86527 1.21056 1.36566 1.85711 1.25379 0.93319 0.80306 0.70369 1.90459 1.66649 1.36399 1.45507 1.20171 0.85646 0.86676 1.01385 1.43485 1.74017 1.06894 1.01241 1.19079 1.33425 1.04364 0.81717 0.90303 1.24642 0.96284 1.00080 0.97817 1.69980 1.20260 1.33964 1.28732 0.86397 0.81065 0.77140 0.83039 1.21621 1.21331 1.20252 1.20659 0.89976 0.98392 0.90634 1.23380 0.93099 0.78185 0.78952 1.90661 1.53132 1.37580 1.56301 1.46536 1.11157 1.56864 1.24541 1.17008 0.79856 0.95440 0.86006 1.22226 1.02460 0.92217 1.04905 1.29345 0.94440 0.93197 0.94054 1.81221 1.10718 1.09260 1.08433 1.22404 0.96210 1.03003 0.96030 1.23204 1.02440 0.92625 1.03499 1.23013 0.97512 0.99871 0.99714 0.93649 0.90167 0.92727 0.92348 0.87804 0.93194 0.89327 0.91030 0.76021 0.91436 0.89214 0.90393 0.85230 0.87941 0.88629 0.88374 0.87753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.75 10.56 101.05 1.07 1.82 16 2 O -0.38 -8.13 10.56 -39.24 -0.41 -8.55 16 3 C 0.47 11.09 5.94 36.01 0.21 11.30 16 4 O -0.51 -13.33 15.84 -18.75 -0.30 -13.63 16 5 C 0.19 4.42 5.56 -5.19 -0.03 4.39 16 6 N -0.54 -12.93 1.52 -175.99 -0.27 -13.20 16 7 C -0.26 -7.02 9.59 -15.06 -0.14 -7.16 16 8 H 0.08 2.16 8.00 -52.48 -0.42 1.74 16 9 C 0.01 0.30 4.64 -17.43 -0.08 0.22 16 10 N -0.89 -25.17 9.51 55.49 0.53 -24.65 16 11 Si 0.89 22.29 29.66 -169.99 -5.04 17.25 16 12 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 13 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 14 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 15 C 0.14 2.52 6.15 -5.19 -0.03 2.49 16 16 C 0.48 8.24 7.31 -10.98 -0.08 8.16 16 17 O -0.51 -10.85 13.65 5.56 0.08 -10.78 16 18 N -0.73 -8.83 5.09 -50.22 -0.26 -9.08 16 19 C 0.31 3.53 0.86 -134.60 -0.12 3.41 16 20 C -0.16 -1.75 8.14 37.16 0.30 -1.45 16 21 C 0.21 3.25 10.47 -20.69 -0.22 3.03 16 22 N -0.42 -7.70 18.34 42.23 0.77 -6.93 16 23 C -0.16 -1.20 5.34 -90.62 -0.48 -1.69 16 24 C -0.18 -1.47 9.67 -26.73 -0.26 -1.73 16 25 C -0.16 -1.12 9.55 -26.73 -0.26 -1.37 16 26 H 0.04 0.73 8.13 -51.93 -0.42 0.31 16 27 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.05 1.03 8.13 -51.93 -0.42 0.60 16 29 H 0.06 1.16 8.08 -51.93 -0.42 0.74 16 30 H 0.10 2.65 6.66 -51.93 -0.35 2.31 16 31 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 32 H 0.09 1.60 8.01 -51.93 -0.42 1.19 16 33 H 0.07 1.16 8.10 -51.93 -0.42 0.74 16 34 H 0.40 3.40 8.40 -40.82 -0.34 3.06 16 35 H 0.07 0.63 7.00 -51.93 -0.36 0.26 16 36 H 0.09 1.31 6.17 -51.93 -0.32 0.99 16 37 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.13 0.68 8.04 -51.93 -0.42 0.26 16 39 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.10 1.03 6.34 -51.93 -0.33 0.70 16 41 H 0.10 0.73 7.30 -51.93 -0.38 0.35 16 42 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 LS Contribution 358.49 15.07 5.40 5.40 Total: -1.00 -36.14 358.49 -5.45 -41.59 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -5.84 Total: 1.15 kcal Atomic # 6 Polarization: 21.53 SS G_CDS: -0.11 Total: 21.42 kcal Atomic # 7 Polarization: -54.64 SS G_CDS: 0.78 Total: -53.86 kcal Atomic # 8 Polarization: -32.32 SS G_CDS: -0.64 Total: -32.96 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.04 Total: 17.25 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -36.14 -5.45 -41.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080872072.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.525 kcal (2) G-P(sol) polarization free energy of solvation -36.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds