Wall clock time and date at job start Fri Apr 10 2020 18:00:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34224 * 117.00260 * 2 1 4 4 O 1.20828 * 120.00036 * 359.97438 * 3 2 1 5 5 C 1.50704 * 119.99854 * 180.02562 * 3 2 1 6 6 N 1.46501 * 109.46687 * 183.82246 * 5 3 2 7 7 C 1.36940 * 119.99878 * 90.84125 * 6 5 3 8 8 H 1.08005 * 120.00048 * 168.80677 * 7 6 5 9 9 C 1.38815 * 119.99931 * 348.80266 * 7 6 5 10 10 N 1.31621 * 120.00086 * 327.88681 * 9 7 6 11 11 Si 1.86798 * 120.00078 * 147.88762 * 9 7 6 12 12 H 1.48500 * 109.47449 * 94.98888 * 11 9 7 13 13 H 1.48500 * 109.47372 * 214.99121 * 11 9 7 14 14 H 1.48501 * 109.47106 * 334.98870 * 11 9 7 15 15 C 1.46496 * 120.00382 * 270.83485 * 6 5 3 16 16 C 1.50705 * 109.47065 * 274.10201 * 15 6 5 17 17 O 1.21282 * 119.99859 * 354.90159 * 16 15 6 18 18 N 1.34779 * 119.99733 * 174.90528 * 16 15 6 19 19 C 1.46504 * 119.99493 * 180.02562 * 18 16 15 20 20 C 1.52999 * 109.47541 * 59.99746 * 19 18 16 21 21 C 1.47201 * 109.46836 * 299.99478 * 19 18 16 22 22 N 8.97925 * 147.35414 * 340.29565 * 2 1 3 23 23 C 1.53005 * 109.46507 * 180.02562 * 19 18 16 24 24 C 1.52993 * 117.51749 * 116.28410 * 23 19 18 25 25 C 1.53001 * 117.49328 * 184.91406 * 23 19 18 26 26 H 1.09004 * 109.46877 * 59.99947 * 1 2 3 27 27 H 1.08998 * 109.47735 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46894 * 300.00690 * 1 2 3 29 29 H 1.08995 * 109.47563 * 63.82662 * 5 3 2 30 30 H 1.08994 * 109.46917 * 303.81762 * 5 3 2 31 31 H 0.96996 * 120.00035 * 180.02562 * 10 9 7 32 32 H 1.08994 * 109.47380 * 154.10318 * 15 6 5 33 33 H 1.08996 * 109.46795 * 34.09892 * 15 6 5 34 34 H 0.96994 * 119.99973 * 359.97438 * 18 16 15 35 35 H 1.08992 * 109.46845 * 179.97438 * 20 19 18 36 36 H 1.09002 * 109.46683 * 299.99956 * 20 19 18 37 37 H 1.09003 * 109.46917 * 59.99755 * 20 19 18 38 38 H 1.08995 * 115.54969 * 330.57039 * 23 19 18 39 39 H 1.09003 * 117.49620 * 214.96453 * 24 23 19 40 40 H 1.09000 * 117.50465 * 359.97438 * 24 23 19 41 41 H 1.09000 * 117.50284 * 359.97246 * 25 23 19 42 42 H 1.09003 * 117.49888 * 144.99676 * 25 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2747 -0.0006 6 7 3.9820 2.6765 0.0916 7 6 4.1975 3.2475 1.3175 8 1 4.6737 4.2144 1.3866 9 6 3.8038 2.5836 2.4713 10 7 2.7416 1.8066 2.4535 11 14 4.7815 2.7930 4.0491 12 1 4.1633 3.8599 4.8767 13 1 4.7793 1.5155 4.8061 14 1 6.1794 3.1702 3.7189 15 6 4.1671 3.4674 -1.1275 16 6 5.5635 3.2586 -1.6545 17 8 6.3580 2.5963 -1.0212 18 7 5.9295 3.8080 -2.8296 19 6 7.2868 3.6046 -3.3421 20 6 7.5387 2.1084 -3.5392 21 6 8.2608 4.1435 -2.3789 22 7 9.0127 4.5602 -1.6332 23 6 7.4401 4.3290 -4.6810 24 6 8.4506 5.4755 -4.7528 25 6 8.7563 4.1423 -5.4384 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5140 0.8899 29 1 3.9526 0.8412 -0.9230 30 1 3.9594 0.7224 0.8529 31 1 2.4663 1.3431 3.2598 32 1 4.0181 4.5232 -0.9018 33 1 3.4441 3.1509 -1.8792 34 1 5.2940 4.3375 -3.3362 35 1 8.5483 1.9572 -3.9209 36 1 7.4295 1.5929 -2.5851 37 1 6.8173 1.7094 -4.2524 38 1 6.5288 4.4235 -5.2714 39 1 8.2040 6.3245 -5.3905 40 1 9.0061 5.7143 -3.8459 41 1 9.5131 3.5039 -4.9827 42 1 8.7109 4.1142 -6.5272 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080872072.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:00:58 Heat of formation + Delta-G solvation = -46.751845 kcal Electronic energy + Delta-G solvation = -26250.403261 eV Core-core repulsion = 22425.685974 eV Total energy + Delta-G solvation = -3824.717287 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.152 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.34822 -40.73648 -39.27719 -37.51254 -36.80658 -36.33897 -35.30280 -33.49482 -31.74809 -30.10030 -28.40859 -27.63405 -26.05356 -24.10916 -23.31162 -22.80483 -21.77771 -21.03672 -19.09337 -18.68058 -18.31065 -17.88723 -17.24358 -17.04300 -16.80497 -16.51208 -16.11301 -15.80637 -15.34855 -15.22639 -15.03021 -14.69427 -14.33580 -14.03979 -13.87414 -13.83016 -13.71736 -13.49975 -13.22817 -12.85708 -12.83826 -12.68167 -12.55883 -12.40971 -12.31386 -12.15905 -12.12120 -11.96703 -11.38801 -11.33695 -11.24157 -11.16661 -10.73350 -10.42116 -10.25007 -9.08336 -8.06706 -5.25780 1.35511 1.40625 1.43802 1.54965 1.69131 1.79753 1.97619 2.21021 2.46624 2.53313 2.70190 3.01511 3.16068 3.48526 3.55689 3.87433 4.04639 4.11774 4.31242 4.39745 4.43328 4.49523 4.54222 4.56463 4.63046 4.71915 4.76773 4.84761 4.89009 4.96382 5.03353 5.04744 5.13059 5.27974 5.33870 5.50383 5.57859 5.96298 6.08530 6.45976 6.67591 6.94287 7.42197 7.50109 7.73351 8.05689 9.02896 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.015353 B = 0.004289 C = 0.003578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.320392 B = 6526.267457 C = 7824.154502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.386 6.386 3 C 0.472 3.528 4 O -0.536 6.536 5 C 0.193 3.807 6 N -0.558 5.558 7 C -0.258 4.258 8 H 0.068 0.932 9 C -0.033 4.033 10 N -0.907 5.907 11 Si 0.945 3.055 12 H -0.288 1.288 13 H -0.286 1.286 14 H -0.289 1.289 15 C 0.131 3.869 16 C 0.488 3.512 17 O -0.552 6.552 18 N -0.709 5.709 19 C 0.303 3.697 20 C -0.157 4.157 21 C 0.225 3.775 22 N -0.481 5.481 23 C -0.149 4.149 24 C -0.194 4.194 25 C -0.150 4.150 26 H 0.058 0.942 27 H 0.124 0.876 28 H 0.034 0.966 29 H 0.090 0.910 30 H 0.075 0.925 31 H 0.252 0.748 32 H 0.092 0.908 33 H 0.101 0.899 34 H 0.426 0.574 35 H 0.083 0.917 36 H 0.051 0.949 37 H 0.107 0.893 38 H 0.169 0.831 39 H 0.124 0.876 40 H 0.062 0.938 41 H 0.088 0.912 42 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.956 0.173 -21.509 21.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.303 6.303 3 C 0.313 3.687 4 O -0.424 6.424 5 C 0.063 3.937 6 N -0.275 5.275 7 C -0.388 4.388 8 H 0.086 0.914 9 C -0.230 4.230 10 N -0.552 5.552 11 Si 0.774 3.226 12 H -0.215 1.215 13 H -0.212 1.212 14 H -0.215 1.215 15 C 0.001 3.999 16 C 0.273 3.727 17 O -0.427 6.427 18 N -0.367 5.367 19 C 0.213 3.787 20 C -0.215 4.215 21 C -0.094 4.094 22 N -0.158 5.158 23 C -0.168 4.168 24 C -0.231 4.231 25 C -0.188 4.188 26 H 0.076 0.924 27 H 0.142 0.858 28 H 0.052 0.948 29 H 0.108 0.892 30 H 0.093 0.907 31 H 0.061 0.939 32 H 0.110 0.890 33 H 0.119 0.881 34 H 0.266 0.734 35 H 0.102 0.898 36 H 0.070 0.930 37 H 0.126 0.874 38 H 0.186 0.814 39 H 0.142 0.858 40 H 0.081 0.919 41 H 0.106 0.894 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 4.323 0.542 -19.746 20.221 hybrid contribution -0.302 0.404 1.481 1.564 sum 4.022 0.946 -18.265 18.726 Atomic orbital electron populations 1.23170 0.77228 1.04119 1.00938 1.86481 1.23422 1.35196 1.85157 1.25345 0.93507 0.80400 0.69425 1.90432 1.67375 1.37479 1.47114 1.20099 0.85566 0.86402 1.01599 1.43538 1.74678 1.07509 1.01823 1.19205 1.32125 1.03911 0.83522 0.91409 1.25129 0.97120 1.00907 0.99810 1.70071 1.21204 1.35201 1.28715 0.85620 0.79237 0.76869 0.80866 1.21500 1.21215 1.21486 1.20882 0.91436 0.98001 0.89557 1.22783 0.92015 0.77957 0.79976 1.90671 1.54074 1.39915 1.58080 1.46130 1.12001 1.55583 1.22988 1.17492 0.77970 0.96434 0.86816 1.22221 1.04511 0.91128 1.03673 1.30267 0.94001 0.91710 0.93407 1.81214 1.12705 1.11430 1.10423 1.22470 0.98244 1.02146 0.93945 1.23212 1.02814 0.94113 1.02984 1.23144 0.96233 0.98176 1.01207 0.92355 0.85815 0.94754 0.89172 0.90727 0.93862 0.89040 0.88069 0.73399 0.89834 0.93036 0.87397 0.81407 0.85808 0.91933 0.89393 0.84733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.30 10.56 113.37 1.20 2.49 16 2 O -0.39 -16.04 10.56 -51.36 -0.54 -16.58 16 3 C 0.47 22.22 5.94 71.24 0.42 22.65 16 4 O -0.54 -28.15 15.84 21.96 0.35 -27.80 16 5 C 0.19 8.92 5.56 85.63 0.48 9.39 16 6 N -0.56 -26.74 1.52 -710.70 -1.08 -27.82 16 7 C -0.26 -14.30 9.59 84.03 0.81 -13.50 16 8 H 0.07 3.80 8.00 -2.91 -0.02 3.78 16 9 C -0.03 -1.87 4.64 84.86 0.39 -1.48 16 10 N -0.91 -52.48 9.51 21.65 0.21 -52.27 16 11 Si 0.94 47.15 29.66 68.60 2.03 49.18 16 12 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 13 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 14 H -0.29 -14.78 7.11 99.48 0.71 -14.07 16 15 C 0.13 4.72 6.15 85.64 0.53 5.25 16 16 C 0.49 16.18 7.31 87.66 0.64 16.82 16 17 O -0.55 -23.84 13.65 -3.04 -0.04 -23.88 16 18 N -0.71 -15.23 5.09 -431.18 -2.19 -17.42 16 19 C 0.30 6.28 0.86 1.80 0.00 6.28 16 20 C -0.16 -3.10 8.14 71.98 0.59 -2.51 16 21 C 0.23 6.95 10.47 89.42 0.94 7.89 16 22 N -0.48 -18.17 18.34 20.03 0.37 -17.81 16 23 C -0.15 -1.69 5.34 -10.79 -0.06 -1.75 16 24 C -0.19 -2.66 9.67 30.59 0.30 -2.37 16 25 C -0.15 -1.49 9.55 30.60 0.29 -1.20 16 26 H 0.06 1.76 8.13 -2.38 -0.02 1.74 16 27 H 0.12 2.95 8.14 -2.39 -0.02 2.93 16 28 H 0.03 1.26 8.13 -2.39 -0.02 1.24 16 29 H 0.09 3.50 8.08 -2.39 -0.02 3.48 16 30 H 0.07 3.90 6.66 -2.39 -0.02 3.88 16 31 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 32 H 0.09 3.21 8.01 -2.39 -0.02 3.19 16 33 H 0.10 3.02 8.10 -2.39 -0.02 3.00 16 34 H 0.43 5.48 8.40 -92.71 -0.78 4.70 16 35 H 0.08 1.37 7.00 -2.39 -0.02 1.35 16 36 H 0.05 1.47 6.17 -2.39 -0.01 1.46 16 37 H 0.11 1.48 8.14 -2.39 -0.02 1.47 16 38 H 0.17 0.71 8.04 -2.39 -0.02 0.69 16 39 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.06 1.32 6.34 -2.39 -0.02 1.30 16 41 H 0.09 1.08 7.30 -2.39 -0.02 1.07 16 42 H 0.13 0.60 8.14 -2.39 -0.02 0.58 16 Total: -1.00 -82.65 358.49 5.89 -76.75 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: 0.27 Total: 9.68 kcal Atomic # 6 Polarization: 41.45 SS G_CDS: 6.52 Total: 47.97 kcal Atomic # 7 Polarization: -112.63 SS G_CDS: -2.70 Total: -115.32 kcal Atomic # 8 Polarization: -68.03 SS G_CDS: -0.24 Total: -68.26 kcal Atomic # 14 Polarization: 47.15 SS G_CDS: 2.03 Total: 49.18 kcal Total: -82.65 5.89 -76.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080872072.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.002 kcal (2) G-P(sol) polarization free energy of solvation -82.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds