Wall clock time and date at job start Fri Apr 10 2020 18:01:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46900 * 109.47044 * 2 1 4 4 C 1.46906 * 110.99971 * 200.01400 * 3 2 1 5 5 C 1.50705 * 109.46635 * 66.04384 * 4 3 2 6 6 H 1.07999 * 120.00465 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99504 * 179.97438 * 5 4 3 8 8 N 1.31516 * 120.00228 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99996 * 179.97438 * 7 5 4 10 10 H 1.48508 * 109.46987 * 60.00165 * 9 7 5 11 11 H 1.48499 * 109.47370 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47157 * 300.00235 * 9 7 5 13 13 C 1.46893 * 111.00267 * 76.05981 * 3 2 1 14 14 C 1.50703 * 109.47405 * 200.15146 * 13 3 2 15 15 O 1.21237 * 119.99490 * 356.02834 * 14 13 3 16 16 N 1.34780 * 120.00119 * 176.02330 * 14 13 3 17 17 C 1.34773 * 119.99688 * 179.97438 * 16 14 13 18 18 O 1.21543 * 120.00416 * 0.02562 * 17 16 14 19 19 N 1.34776 * 120.00017 * 179.97438 * 17 16 14 20 20 C 1.46496 * 120.00156 * 180.02562 * 19 17 16 21 21 C 1.50706 * 109.47073 * 180.02562 * 20 19 17 22 22 C 1.34514 * 125.78744 * 90.00142 * 21 20 19 23 23 C 1.41385 * 106.83686 * 179.97438 * 22 21 20 24 24 C 1.34508 * 106.84381 * 0.02562 * 23 22 21 25 25 O 1.34300 * 125.78597 * 269.69334 * 21 20 19 26 26 H 1.09001 * 109.46757 * 294.74344 * 1 2 3 27 27 H 1.08994 * 109.46829 * 54.73640 * 1 2 3 28 28 H 1.08998 * 109.47117 * 174.74102 * 1 2 3 29 29 H 1.09000 * 109.47129 * 239.99806 * 2 1 3 30 30 H 1.08998 * 109.47105 * 119.99936 * 2 1 3 31 31 H 1.08994 * 109.47025 * 186.04040 * 4 3 2 32 32 H 1.09001 * 109.46727 * 306.04977 * 4 3 2 33 33 H 0.96994 * 119.99858 * 179.97438 * 8 7 5 34 34 H 1.09002 * 109.47420 * 80.15172 * 13 3 2 35 35 H 1.09004 * 109.47486 * 320.15266 * 13 3 2 36 36 H 0.96993 * 120.00135 * 0.02562 * 16 14 13 37 37 H 0.97001 * 119.99759 * 0.02562 * 19 17 16 38 38 H 1.09003 * 109.47267 * 300.00446 * 20 19 17 39 39 H 1.09005 * 109.46992 * 60.00731 * 20 19 17 40 40 H 1.07996 * 126.58157 * 0.03941 * 22 21 20 41 41 H 1.07999 * 126.57907 * 179.97438 * 23 22 21 42 42 H 1.08005 * 125.79175 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4101 1.4518 -0.4694 5 6 3.4701 1.0502 -1.9207 6 1 2.5658 0.7735 -2.4423 7 6 4.6794 1.0371 -2.5829 8 7 5.7806 1.3746 -1.9479 9 14 4.7540 0.5387 -4.3816 10 1 3.9143 1.4621 -5.1864 11 1 6.1595 0.6063 -4.8562 12 1 4.2475 -0.8492 -4.5321 13 6 1.8837 1.9915 1.3309 14 6 1.9129 3.4929 1.2043 15 8 2.1070 4.0063 0.1232 16 7 1.7232 4.2649 2.2927 17 6 1.7499 5.6076 2.1794 18 8 1.9446 6.1223 1.0957 19 7 1.5596 6.3796 3.2676 20 6 1.5881 7.8391 3.1444 21 6 1.3509 8.4620 4.4960 22 6 2.3015 8.7824 5.3922 23 6 1.6391 9.3377 6.5110 24 6 0.3234 9.3230 6.2319 25 8 0.1552 8.7968 5.0076 26 1 -0.3633 0.4301 0.9333 27 1 -0.3633 0.5933 -0.8391 28 1 -0.3633 -1.0233 -0.0942 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.7825 2.4702 -0.3585 32 1 4.0259 0.7733 0.1211 33 1 6.6313 1.3650 -2.4136 34 1 2.7075 1.6643 1.9653 35 1 0.9378 1.6828 1.7761 36 1 1.5682 3.8541 3.1575 37 1 1.4039 5.9688 4.1324 38 1 2.5608 8.1529 2.7656 39 1 0.8083 8.1607 2.4539 40 1 3.3664 8.6432 5.2785 41 1 2.1008 9.7029 7.4165 42 1 -0.4639 9.6788 6.8800 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081040109.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:03 Heat of formation + Delta-G solvation = -28.749767 kcal Electronic energy + Delta-G solvation = -24854.033807 eV Core-core repulsion = 21030.097149 eV Total energy + Delta-G solvation = -3823.936658 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.152 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.98188 -40.85709 -38.41878 -36.38706 -35.07495 -34.25665 -33.33418 -32.54253 -30.71409 -30.24729 -28.35854 -26.41461 -25.20809 -22.38048 -22.27764 -22.15457 -20.99452 -20.40542 -19.88008 -18.93178 -17.71454 -16.86040 -16.44756 -16.42947 -15.97959 -15.29488 -15.06757 -15.00710 -14.41559 -14.28411 -14.01134 -13.91334 -13.54550 -13.23304 -13.15249 -13.02454 -12.85887 -12.35121 -12.20812 -11.97261 -11.61956 -11.17899 -10.95647 -10.72464 -10.64971 -10.47446 -10.34453 -10.15261 -9.82882 -9.74092 -9.33631 -9.32063 -9.07816 -8.89322 -8.32683 -7.28712 -5.92136 -3.91716 1.16390 2.10514 2.44010 2.50039 2.70332 3.41375 3.45324 3.49472 3.52446 3.94685 4.18416 4.51479 4.61825 4.64875 4.87045 5.04043 5.08365 5.22156 5.39477 5.43712 5.47685 5.53948 5.66022 5.67074 5.72378 5.94646 6.04748 6.05320 6.09096 6.21783 6.27053 6.65164 6.70310 6.71275 6.77285 7.31611 7.32906 7.56154 7.86711 8.16768 8.22308 8.44062 8.51419 8.62603 9.13607 9.70724 11.19388 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.021768 B = 0.002550 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.011670 B =10979.363599 C =11771.635467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.057 3.943 3 N -0.522 5.522 4 C 0.193 3.807 5 C -0.501 4.501 6 H 0.063 0.937 7 C 0.054 3.946 8 N -0.900 5.900 9 Si 0.898 3.102 10 H -0.276 1.276 11 H -0.289 1.289 12 H -0.278 1.278 13 C 0.041 3.959 14 C 0.506 3.494 15 O -0.423 6.423 16 N -0.695 5.695 17 C 0.696 3.304 18 O -0.526 6.526 19 N -0.743 5.743 20 C 0.220 3.780 21 C -0.035 4.035 22 C -0.183 4.183 23 C -0.218 4.218 24 C -0.031 4.031 25 O -0.171 6.171 26 H 0.041 0.959 27 H 0.062 0.938 28 H 0.049 0.951 29 H 0.092 0.908 30 H 0.021 0.979 31 H 0.041 0.959 32 H -0.012 1.012 33 H 0.261 0.739 34 H 0.061 0.939 35 H 0.093 0.907 36 H 0.404 0.596 37 H 0.399 0.601 38 H 0.102 0.898 39 H 0.087 0.913 40 H 0.152 0.848 41 H 0.150 0.850 42 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.065 10.347 21.765 26.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.071 4.071 3 N -0.247 5.247 4 C 0.068 3.932 5 C -0.539 4.539 6 H 0.081 0.919 7 C -0.147 4.147 8 N -0.540 5.540 9 Si 0.726 3.274 10 H -0.201 1.201 11 H -0.214 1.214 12 H -0.204 1.204 13 C -0.091 4.091 14 C 0.290 3.710 15 O -0.285 6.285 16 N -0.363 5.363 17 C 0.396 3.604 18 O -0.397 6.397 19 N -0.402 5.402 20 C 0.096 3.904 21 C -0.085 4.085 22 C -0.203 4.203 23 C -0.237 4.237 24 C -0.099 4.099 25 O -0.067 6.067 26 H 0.060 0.940 27 H 0.081 0.919 28 H 0.068 0.932 29 H 0.110 0.890 30 H 0.039 0.961 31 H 0.059 0.941 32 H 0.006 0.994 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.111 0.889 36 H 0.238 0.762 37 H 0.233 0.767 38 H 0.120 0.880 39 H 0.105 0.895 40 H 0.170 0.830 41 H 0.168 0.832 42 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -11.100 11.373 19.436 25.106 hybrid contribution 0.676 -0.889 1.007 1.504 sum -10.425 10.484 20.443 25.229 Atomic orbital electron populations 1.21823 0.96540 1.00516 1.01411 1.22017 0.94250 0.89448 1.01410 1.61859 1.26928 1.16927 1.18965 1.19839 0.80377 0.97445 0.95529 1.21052 0.93236 1.44383 0.95270 0.91905 1.24970 0.95646 0.95699 0.98339 1.69947 0.98418 1.48905 1.36699 0.86556 0.76786 0.78890 0.85132 1.20129 1.21447 1.20362 1.21896 1.02255 0.89953 0.95008 1.21201 0.76810 0.89786 0.83158 1.90892 1.38112 1.74147 1.25358 1.44365 1.71961 1.05971 1.14017 1.16112 0.78526 0.81312 0.84454 1.91110 1.51168 1.72291 1.25134 1.45272 1.78745 1.05925 1.10269 1.19432 1.04064 0.78027 0.88873 1.22312 0.82733 1.05777 0.97726 1.21770 1.00692 1.03862 0.93970 1.21903 0.93733 1.06904 1.01192 1.24152 0.98617 1.01885 0.85254 1.84062 1.32394 1.61736 1.28476 0.94037 0.91926 0.93173 0.89002 0.96098 0.94125 0.99391 0.92991 0.92077 0.88890 0.76195 0.76696 0.88015 0.89493 0.82991 0.83197 0.77895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 9.96 37.16 0.37 -1.81 16 2 C 0.06 1.05 5.51 -3.82 -0.02 1.03 16 3 N -0.52 -11.35 4.01 -237.51 -0.95 -12.30 16 4 C 0.19 5.21 4.33 -4.97 -0.02 5.19 16 5 C -0.50 -14.70 8.23 -34.44 -0.28 -14.99 16 6 H 0.06 1.82 7.32 -52.49 -0.38 1.44 16 7 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 8 N -0.90 -27.91 13.29 55.43 0.74 -27.18 16 9 Si 0.90 22.68 29.54 -169.99 -5.02 17.66 16 10 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 11 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 13 C 0.04 0.69 5.30 -4.98 -0.03 0.66 16 14 C 0.51 9.43 7.50 -10.98 -0.08 9.35 16 15 O -0.42 -10.68 13.48 -18.21 -0.25 -10.92 16 16 N -0.70 -9.27 5.24 -15.78 -0.08 -9.36 16 17 C 0.70 10.47 8.50 -86.92 -0.74 9.73 16 18 O -0.53 -11.05 14.74 -18.48 -0.27 -11.32 16 19 N -0.74 -7.44 5.55 -66.42 -0.37 -7.81 16 20 C 0.22 2.12 6.20 -5.19 -0.03 2.09 16 21 C -0.04 -0.30 6.69 -35.62 -0.24 -0.54 16 22 C -0.18 -1.42 10.81 -39.70 -0.43 -1.84 16 23 C -0.22 -1.44 10.91 -39.70 -0.43 -1.88 16 24 C -0.03 -0.19 12.09 29.41 0.36 0.16 16 25 O -0.17 -1.50 10.65 5.69 0.06 -1.44 16 26 H 0.04 0.54 6.91 -51.93 -0.36 0.18 16 27 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.09 1.93 6.58 -51.93 -0.34 1.58 16 30 H 0.02 0.35 7.99 -51.93 -0.42 -0.06 16 31 H 0.04 1.24 6.63 -51.93 -0.34 0.89 16 32 H -0.01 -0.32 8.12 -51.93 -0.42 -0.75 16 33 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 34 H 0.06 0.94 7.99 -51.93 -0.42 0.52 16 35 H 0.09 1.18 6.58 -51.93 -0.34 0.84 16 36 H 0.40 3.16 8.71 -40.82 -0.36 2.80 16 37 H 0.40 2.74 8.48 -40.82 -0.35 2.39 16 38 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.15 1.00 8.06 -52.49 -0.42 0.58 16 41 H 0.15 0.69 8.06 -52.49 -0.42 0.27 16 42 H 0.20 0.52 8.06 -52.48 -0.42 0.10 16 LS Contribution 359.66 15.07 5.42 5.42 Total: -1.00 -40.10 359.66 -8.22 -48.33 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -5.82 Total: 0.24 kcal Atomic # 6 Polarization: 10.35 SS G_CDS: -1.68 Total: 8.68 kcal Atomic # 7 Polarization: -55.98 SS G_CDS: -0.67 Total: -56.65 kcal Atomic # 8 Polarization: -23.23 SS G_CDS: -0.46 Total: -23.68 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.66 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -40.10 -8.22 -48.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081040109.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.576 kcal (2) G-P(sol) polarization free energy of solvation -40.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds