Wall clock time and date at job start Fri Apr 10 2020 18:01:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46900 * 109.47044 * 2 1 4 4 C 1.46906 * 110.99971 * 200.01400 * 3 2 1 5 5 C 1.50705 * 109.46635 * 66.04384 * 4 3 2 6 6 H 1.07999 * 120.00465 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99504 * 179.97438 * 5 4 3 8 8 N 1.31516 * 120.00228 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99996 * 179.97438 * 7 5 4 10 10 H 1.48508 * 109.46987 * 60.00165 * 9 7 5 11 11 H 1.48499 * 109.47370 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47157 * 300.00235 * 9 7 5 13 13 C 1.46893 * 111.00267 * 76.05981 * 3 2 1 14 14 C 1.50703 * 109.47405 * 200.15146 * 13 3 2 15 15 O 1.21237 * 119.99490 * 356.02834 * 14 13 3 16 16 N 1.34780 * 120.00119 * 176.02330 * 14 13 3 17 17 C 1.34773 * 119.99688 * 179.97438 * 16 14 13 18 18 O 1.21543 * 120.00416 * 0.02562 * 17 16 14 19 19 N 1.34776 * 120.00017 * 179.97438 * 17 16 14 20 20 C 1.46496 * 120.00156 * 180.02562 * 19 17 16 21 21 C 1.50706 * 109.47073 * 180.02562 * 20 19 17 22 22 C 1.34514 * 125.78744 * 90.00142 * 21 20 19 23 23 C 1.41385 * 106.83686 * 179.97438 * 22 21 20 24 24 C 1.34508 * 106.84381 * 0.02562 * 23 22 21 25 25 O 1.34300 * 125.78597 * 269.69334 * 21 20 19 26 26 H 1.09001 * 109.46757 * 294.74344 * 1 2 3 27 27 H 1.08994 * 109.46829 * 54.73640 * 1 2 3 28 28 H 1.08998 * 109.47117 * 174.74102 * 1 2 3 29 29 H 1.09000 * 109.47129 * 239.99806 * 2 1 3 30 30 H 1.08998 * 109.47105 * 119.99936 * 2 1 3 31 31 H 1.08994 * 109.47025 * 186.04040 * 4 3 2 32 32 H 1.09001 * 109.46727 * 306.04977 * 4 3 2 33 33 H 0.96994 * 119.99858 * 179.97438 * 8 7 5 34 34 H 1.09002 * 109.47420 * 80.15172 * 13 3 2 35 35 H 1.09004 * 109.47486 * 320.15266 * 13 3 2 36 36 H 0.96993 * 120.00135 * 0.02562 * 16 14 13 37 37 H 0.97001 * 119.99759 * 0.02562 * 19 17 16 38 38 H 1.09003 * 109.47267 * 300.00446 * 20 19 17 39 39 H 1.09005 * 109.46992 * 60.00731 * 20 19 17 40 40 H 1.07996 * 126.58157 * 0.03941 * 22 21 20 41 41 H 1.07999 * 126.57907 * 179.97438 * 23 22 21 42 42 H 1.08005 * 125.79175 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4101 1.4518 -0.4694 5 6 3.4701 1.0502 -1.9207 6 1 2.5658 0.7735 -2.4423 7 6 4.6794 1.0371 -2.5829 8 7 5.7806 1.3746 -1.9479 9 14 4.7540 0.5387 -4.3816 10 1 3.9143 1.4621 -5.1864 11 1 6.1595 0.6063 -4.8562 12 1 4.2475 -0.8492 -4.5321 13 6 1.8837 1.9915 1.3309 14 6 1.9129 3.4929 1.2043 15 8 2.1070 4.0063 0.1232 16 7 1.7232 4.2649 2.2927 17 6 1.7499 5.6076 2.1794 18 8 1.9446 6.1223 1.0957 19 7 1.5596 6.3796 3.2676 20 6 1.5881 7.8391 3.1444 21 6 1.3509 8.4620 4.4960 22 6 2.3015 8.7824 5.3922 23 6 1.6391 9.3377 6.5110 24 6 0.3234 9.3230 6.2319 25 8 0.1552 8.7968 5.0076 26 1 -0.3633 0.4301 0.9333 27 1 -0.3633 0.5933 -0.8391 28 1 -0.3633 -1.0233 -0.0942 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.7825 2.4702 -0.3585 32 1 4.0259 0.7733 0.1211 33 1 6.6313 1.3650 -2.4136 34 1 2.7075 1.6643 1.9653 35 1 0.9378 1.6828 1.7761 36 1 1.5682 3.8541 3.1575 37 1 1.4039 5.9688 4.1324 38 1 2.5608 8.1529 2.7656 39 1 0.8083 8.1607 2.4539 40 1 3.3664 8.6432 5.2785 41 1 2.1008 9.7029 7.4165 42 1 -0.4639 9.6788 6.8800 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081040109.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:03 Heat of formation + Delta-G solvation = -60.583608 kcal Electronic energy + Delta-G solvation = -24855.414226 eV Core-core repulsion = 21030.097149 eV Total energy + Delta-G solvation = -3825.317077 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.152 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.55811 -42.16890 -39.84302 -37.97914 -36.19018 -35.63201 -34.73914 -33.91902 -31.76948 -31.41578 -30.10695 -27.59264 -26.64932 -24.27283 -23.53230 -22.70734 -21.85108 -21.57466 -21.33571 -20.03477 -18.66093 -18.50430 -17.90606 -17.32409 -17.20718 -16.81033 -16.32740 -16.14510 -15.93189 -15.62357 -15.38816 -15.24773 -14.87248 -14.30845 -14.22842 -14.18591 -13.85232 -13.76867 -13.54222 -13.15170 -13.00332 -12.81401 -12.61492 -12.55566 -12.35891 -12.15509 -11.85275 -11.59278 -11.29330 -11.19222 -10.91586 -10.70368 -10.56484 -10.32135 -9.55630 -8.98221 -8.18977 -6.26837 0.51954 1.11447 1.33358 1.37513 1.43205 1.50058 1.71810 2.02374 2.23961 2.40786 2.90869 3.13947 3.37752 3.58631 3.81304 4.10242 4.11868 4.19629 4.34177 4.36547 4.41598 4.45231 4.59441 4.79823 4.88179 5.00296 5.02898 5.06765 5.09790 5.12054 5.15620 5.23534 5.40454 5.52186 5.54513 5.55979 5.66732 6.09477 6.15496 6.38780 6.50022 6.67286 6.87786 7.22656 7.31343 7.40892 8.92511 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.021768 B = 0.002550 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.011670 B =10979.363599 C =11771.635467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.055 3.945 3 N -0.543 5.543 4 C 0.213 3.787 5 C -0.518 4.518 6 H 0.059 0.941 7 C -0.004 4.004 8 N -0.936 5.936 9 Si 0.968 3.032 10 H -0.277 1.277 11 H -0.282 1.282 12 H -0.259 1.259 13 C 0.042 3.958 14 C 0.509 3.491 15 O -0.500 6.500 16 N -0.671 5.671 17 C 0.694 3.306 18 O -0.589 6.589 19 N -0.714 5.714 20 C 0.221 3.779 21 C -0.053 4.053 22 C -0.182 4.182 23 C -0.230 4.230 24 C -0.023 4.023 25 O -0.188 6.188 26 H 0.070 0.930 27 H 0.041 0.959 28 H 0.075 0.925 29 H 0.058 0.942 30 H 0.044 0.956 31 H -0.003 1.003 32 H -0.030 1.030 33 H 0.263 0.737 34 H 0.082 0.918 35 H 0.146 0.854 36 H 0.434 0.566 37 H 0.418 0.582 38 H 0.098 0.902 39 H 0.076 0.924 40 H 0.160 0.840 41 H 0.171 0.829 42 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.773 9.658 24.270 29.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.072 4.072 3 N -0.268 5.268 4 C 0.087 3.913 5 C -0.556 4.556 6 H 0.077 0.923 7 C -0.201 4.201 8 N -0.577 5.577 9 Si 0.792 3.208 10 H -0.203 1.203 11 H -0.207 1.207 12 H -0.184 1.184 13 C -0.089 4.089 14 C 0.295 3.705 15 O -0.368 6.368 16 N -0.341 5.341 17 C 0.394 3.606 18 O -0.464 6.464 19 N -0.374 5.374 20 C 0.097 3.903 21 C -0.103 4.103 22 C -0.202 4.202 23 C -0.249 4.249 24 C -0.091 4.091 25 O -0.085 6.085 26 H 0.089 0.911 27 H 0.060 0.940 28 H 0.094 0.906 29 H 0.077 0.923 30 H 0.062 0.938 31 H 0.015 0.985 32 H -0.013 1.013 33 H 0.071 0.929 34 H 0.100 0.900 35 H 0.164 0.836 36 H 0.273 0.727 37 H 0.256 0.744 38 H 0.116 0.884 39 H 0.094 0.906 40 H 0.177 0.823 41 H 0.188 0.812 42 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -12.854 10.654 22.081 27.682 hybrid contribution 1.150 -0.597 0.425 1.364 sum -11.703 10.058 22.505 27.288 Atomic orbital electron populations 1.21738 0.93286 1.02098 1.02056 1.22068 0.96739 0.87485 1.00922 1.61643 1.23333 1.19284 1.22534 1.19341 0.83332 0.94016 0.94610 1.21424 0.93251 1.44177 0.96775 0.92251 1.25930 0.95261 0.95635 1.03264 1.70081 0.98991 1.50003 1.38658 0.85461 0.77011 0.79227 0.79059 1.20260 1.20687 1.18362 1.22081 1.05689 0.88170 0.92965 1.21672 0.74912 0.90904 0.82965 1.90874 1.41869 1.75473 1.28537 1.43911 1.70482 1.05337 1.14327 1.16330 0.77994 0.81766 0.84517 1.91080 1.53956 1.73413 1.27983 1.45051 1.76645 1.05968 1.09730 1.19361 1.03575 0.77460 0.89876 1.21988 0.83244 1.07558 0.97487 1.22015 1.01038 1.02999 0.94134 1.22218 0.93958 1.07088 1.01620 1.24933 0.99710 1.00123 0.84328 1.84051 1.32470 1.62283 1.29650 0.91148 0.94011 0.90598 0.92293 0.93829 0.98462 1.01266 0.92856 0.89987 0.83612 0.72686 0.74406 0.88408 0.90563 0.82278 0.81169 0.74409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.64 9.96 71.98 0.72 -2.92 16 2 C 0.06 1.98 5.51 86.30 0.48 2.46 16 3 N -0.54 -23.68 4.01 -905.35 -3.63 -27.31 16 4 C 0.21 11.99 4.33 85.56 0.37 12.36 16 5 C -0.52 -31.46 8.23 25.60 0.21 -31.25 16 6 H 0.06 3.55 7.32 -2.91 -0.02 3.53 16 7 C 0.00 -0.22 5.46 84.66 0.46 0.24 16 8 N -0.94 -59.96 13.29 21.45 0.28 -59.67 16 9 Si 0.97 47.46 29.54 68.60 2.03 49.48 16 10 H -0.28 -13.55 7.11 99.48 0.71 -12.85 16 11 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 12 H -0.26 -11.83 7.11 99.48 0.71 -11.13 16 13 C 0.04 1.34 5.30 85.56 0.45 1.80 16 14 C 0.51 19.06 7.50 87.66 0.66 19.72 16 15 O -0.50 -26.53 13.48 19.86 0.27 -26.27 16 16 N -0.67 -17.24 5.24 -440.52 -2.31 -19.55 16 17 C 0.69 21.04 8.50 179.06 1.52 22.57 16 18 O -0.59 -26.02 14.74 18.91 0.28 -25.74 16 19 N -0.71 -13.81 5.55 -482.34 -2.68 -16.49 16 20 C 0.22 4.31 6.20 85.64 0.53 4.84 16 21 C -0.05 -0.86 6.69 24.83 0.17 -0.70 16 22 C -0.18 -2.54 10.81 22.19 0.24 -2.30 16 23 C -0.23 -2.48 10.91 22.19 0.24 -2.23 16 24 C -0.02 -0.23 12.09 66.97 0.81 0.58 16 25 O -0.19 -3.01 10.65 -2.56 -0.03 -3.04 16 26 H 0.07 1.50 6.91 -2.39 -0.02 1.48 16 27 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.06 2.49 6.58 -2.39 -0.02 2.47 16 30 H 0.04 1.36 7.99 -2.39 -0.02 1.34 16 31 H 0.00 -0.18 6.63 -2.39 -0.02 -0.19 16 32 H -0.03 -1.76 8.12 -2.39 -0.02 -1.78 16 33 H 0.26 15.83 8.31 -92.71 -0.77 15.06 16 34 H 0.08 2.33 7.99 -2.39 -0.02 2.31 16 35 H 0.15 3.05 6.58 -2.38 -0.02 3.04 16 36 H 0.43 5.53 8.71 -92.71 -0.81 4.72 16 37 H 0.42 4.88 8.48 -92.71 -0.79 4.09 16 38 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 39 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 40 H 0.16 1.90 8.06 -2.91 -0.02 1.87 16 41 H 0.17 1.05 8.06 -2.91 -0.02 1.03 16 42 H 0.24 0.34 8.06 -2.91 -0.02 0.32 16 Total: -1.00 -94.75 359.66 0.54 -94.21 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -0.53 Total: 9.24 kcal Atomic # 6 Polarization: 18.29 SS G_CDS: 6.86 Total: 25.14 kcal Atomic # 7 Polarization: -114.70 SS G_CDS: -8.33 Total: -123.02 kcal Atomic # 8 Polarization: -55.57 SS G_CDS: 0.52 Total: -55.05 kcal Atomic # 14 Polarization: 47.46 SS G_CDS: 2.03 Total: 49.48 kcal Total: -94.75 0.54 -94.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081040109.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.624 kcal (2) G-P(sol) polarization free energy of solvation -94.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds