Wall clock time and date at job start Fri Apr 10 2020 18:01:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47129 * 2 1 4 4 C 1.50701 * 109.47207 * 119.99812 * 2 1 3 5 5 H 1.07998 * 120.00092 * 116.69119 * 4 2 1 6 6 C 1.37877 * 119.99970 * 296.69708 * 4 2 1 7 7 N 1.31518 * 119.99869 * 352.38029 * 6 4 2 8 8 Si 1.86799 * 120.00092 * 172.65762 * 6 4 2 9 9 H 1.48504 * 109.47119 * 264.79864 * 8 6 4 10 10 H 1.48500 * 109.46950 * 24.79265 * 8 6 4 11 11 H 1.48495 * 109.47323 * 144.79340 * 8 6 4 12 12 O 1.45194 * 109.47239 * 239.99916 * 2 1 3 13 13 C 1.34234 * 117.00026 * 90.00510 * 12 2 1 14 14 O 1.20827 * 120.00001 * 359.97438 * 13 12 2 15 15 C 1.50704 * 120.00166 * 180.02562 * 13 12 2 16 16 N 1.46500 * 109.47168 * 179.97438 * 15 13 12 17 17 N 1.40444 * 126.30487 * 269.68663 * 16 15 13 18 18 C 1.28442 * 108.08738 * 179.81839 * 17 16 15 19 19 N 1.38431 * 108.79996 * 0.47426 * 18 17 16 20 20 C 1.33808 * 108.43621 * 359.66039 * 19 18 17 21 21 O 1.21802 * 126.35828 * 180.02562 * 20 19 18 22 22 C 1.47221 * 122.75245 * 179.60397 * 19 18 17 23 23 C 1.53120 * 107.84365 * 67.40085 * 22 19 18 24 24 C 1.51013 * 111.77770 * 276.79035 * 23 22 19 25 25 C 1.51075 * 115.15114 * 70.79956 * 24 23 22 26 26 C 1.51503 * 128.60145 * 180.18094 * 18 17 16 27 27 H 1.08995 * 109.47232 * 297.93176 * 1 2 3 28 28 H 1.09001 * 109.47019 * 57.93111 * 1 2 3 29 29 H 1.09001 * 109.47267 * 177.92378 * 1 2 3 30 30 H 0.97004 * 119.99840 * 180.27763 * 7 6 4 31 31 H 1.08999 * 109.46814 * 299.99407 * 15 13 12 32 32 H 1.08999 * 109.47096 * 59.99447 * 15 13 12 33 33 H 1.08999 * 109.78527 * 186.99513 * 22 19 18 34 34 H 1.09001 * 109.78650 * 307.82779 * 22 19 18 35 35 H 1.09000 * 109.01867 * 156.19882 * 23 22 19 36 36 H 1.08998 * 108.95787 * 37.33867 * 23 22 19 37 37 H 1.09005 * 108.34916 * 309.32958 * 24 23 22 38 38 H 1.09002 * 108.21075 * 192.16780 * 24 23 22 39 39 H 1.08996 * 109.06478 * 169.06895 * 25 24 23 40 40 H 1.09002 * 109.05988 * 50.13276 * 25 24 23 41 41 H 1.09003 * 109.81726 * 232.90163 * 26 18 17 42 42 H 1.09002 * 109.82103 * 353.74752 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6084 -1.6186 1.1323 6 6 1.7564 -0.2009 2.4816 7 7 1.1870 0.9787 2.6003 8 14 2.1983 -1.1825 4.0082 9 1 1.0147 -1.9590 4.4572 10 1 3.3107 -2.1142 3.6927 11 1 2.6206 -0.2550 5.0881 12 8 2.0140 -0.6845 -1.1855 13 6 2.2172 0.0641 -2.2811 14 8 1.9975 1.2518 -2.2506 15 6 2.7184 -0.5772 -3.5495 16 7 2.8565 0.4436 -4.5912 17 7 1.8697 0.8301 -5.5127 18 6 2.3613 1.7514 -6.2606 19 7 3.6681 1.9914 -5.8719 20 6 3.9598 1.1832 -4.8462 21 8 5.0218 1.1241 -4.2528 22 6 4.5255 2.9886 -6.5337 23 6 3.9509 4.3755 -6.2321 24 6 2.8284 4.7343 -7.1764 25 6 1.5466 3.9610 -6.9734 26 6 1.6987 2.4973 -7.4007 27 1 -0.3633 0.4814 0.9079 28 1 -0.3633 0.5456 -0.8709 29 1 -0.3634 -1.0270 -0.0372 30 1 0.9965 1.3389 3.4806 31 1 3.6872 -1.0408 -3.3639 32 1 2.0089 -1.3369 -3.8774 33 1 5.5414 2.9175 -6.1453 34 1 4.5282 2.8166 -7.6101 35 1 4.7445 5.1168 -6.3257 36 1 3.5726 4.3874 -5.2100 37 1 3.1720 4.5670 -8.1973 38 1 2.6109 5.7960 -7.0592 39 1 0.7547 4.4235 -7.5625 40 1 1.2720 3.9975 -5.9191 41 1 2.3209 2.4358 -8.2936 42 1 0.7180 2.0669 -7.6035 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113689888.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:08 Heat of formation + Delta-G solvation = -50.459954 kcal Electronic energy + Delta-G solvation = -26097.307894 eV Core-core repulsion = 22272.429812 eV Total energy + Delta-G solvation = -3824.878082 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.152 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.56521 -39.49909 -37.90500 -37.01291 -35.77541 -34.22694 -33.26065 -33.07627 -30.41243 -29.65179 -28.72749 -26.24672 -25.26776 -24.22759 -22.54963 -21.37914 -20.77824 -20.50239 -19.70593 -17.72145 -17.34904 -16.64006 -16.29804 -15.96161 -15.82879 -15.35292 -15.12528 -15.09067 -14.70748 -14.42949 -14.19956 -13.70568 -13.25373 -12.93646 -12.90065 -12.66824 -12.18196 -12.16947 -11.96986 -11.78923 -11.68861 -11.32517 -11.21610 -11.12103 -11.09107 -11.04229 -10.80890 -10.43071 -10.29943 -10.25545 -10.15253 -9.60535 -9.50968 -8.92522 -8.50745 -8.46743 -6.17943 -4.22570 1.65326 1.93510 2.75230 2.89443 2.96103 3.26701 3.32379 3.36810 3.70326 4.14268 4.26687 4.32524 4.35928 4.41082 4.60965 4.84584 4.93195 4.97623 5.07738 5.16013 5.27222 5.27881 5.30888 5.42997 5.57353 5.59567 5.69691 5.71348 5.79042 5.90681 5.95619 6.16256 6.50825 6.61484 6.84406 6.87760 7.11635 7.58400 7.66000 7.69271 7.88552 8.11310 8.13292 8.61153 8.89091 9.41701 10.91228 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.024663 B = 0.003103 C = 0.003072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.024534 B = 9020.633328 C = 9111.066039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.215 3.785 3 H 0.050 0.950 4 C -0.523 4.523 5 H 0.070 0.930 6 C 0.063 3.937 7 N -0.888 5.888 8 Si 0.911 3.089 9 H -0.278 1.278 10 H -0.271 1.271 11 H -0.284 1.284 12 O -0.353 6.353 13 C 0.436 3.564 14 O -0.508 6.508 15 C 0.168 3.832 16 N -0.442 5.442 17 N -0.264 5.264 18 C 0.273 3.727 19 N -0.559 5.559 20 C 0.660 3.340 21 O -0.552 6.552 22 C 0.132 3.868 23 C -0.142 4.142 24 C -0.121 4.121 25 C -0.122 4.122 26 C -0.036 4.036 27 H 0.087 0.913 28 H 0.019 0.981 29 H 0.040 0.960 30 H 0.266 0.734 31 H 0.133 0.867 32 H 0.132 0.868 33 H 0.100 0.900 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.074 0.926 37 H 0.064 0.936 38 H 0.069 0.931 39 H 0.082 0.918 40 H 0.072 0.928 41 H 0.096 0.904 42 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.877 4.888 -24.455 25.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.163 3.837 3 H 0.068 0.932 4 C -0.561 4.561 5 H 0.088 0.912 6 C -0.139 4.139 7 N -0.525 5.525 8 Si 0.737 3.263 9 H -0.204 1.204 10 H -0.195 1.195 11 H -0.210 1.210 12 O -0.269 6.269 13 C 0.276 3.724 14 O -0.397 6.397 15 C 0.045 3.955 16 N -0.262 5.262 17 N -0.084 5.084 18 C -0.006 4.006 19 N -0.289 5.289 20 C 0.360 3.640 21 O -0.425 6.425 22 C 0.011 3.989 23 C -0.181 4.181 24 C -0.158 4.158 25 C -0.160 4.160 26 C -0.076 4.076 27 H 0.105 0.895 28 H 0.038 0.962 29 H 0.059 0.941 30 H 0.076 0.924 31 H 0.151 0.849 32 H 0.150 0.850 33 H 0.118 0.882 34 H 0.108 0.892 35 H 0.103 0.897 36 H 0.092 0.908 37 H 0.083 0.917 38 H 0.087 0.913 39 H 0.101 0.899 40 H 0.090 0.910 41 H 0.114 0.886 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 1.716 4.689 -23.507 24.031 hybrid contribution 0.675 0.156 0.993 1.210 sum 2.391 4.845 -22.514 23.153 Atomic orbital electron populations 1.22080 0.97715 0.99798 1.01119 1.20660 0.91113 0.94343 0.77593 0.93190 1.21015 1.35469 1.10756 0.88827 0.91150 1.24909 0.95046 0.94887 0.99080 1.69983 1.42315 1.15913 1.24299 0.86277 0.78817 0.79644 0.81517 1.20363 1.19509 1.21020 1.86465 1.75878 1.43467 1.21110 1.23585 0.75728 0.86550 0.86549 1.90621 1.47868 1.16782 1.84428 1.20783 1.05801 0.87242 0.81642 1.48469 1.09719 1.37722 1.30306 1.76589 1.14209 1.14889 1.02677 1.24467 0.83656 0.94603 0.97893 1.46317 1.13377 1.37178 1.32054 1.16339 0.85042 0.80991 0.81638 1.91087 1.24378 1.71558 1.55483 1.21930 0.94292 0.85468 0.97220 1.21677 0.99031 0.95900 1.01459 1.20874 0.94611 1.00690 0.99628 1.21286 0.98313 0.93061 1.03350 1.20554 1.01396 0.93910 0.91694 0.89475 0.96203 0.94131 0.92426 0.84931 0.85003 0.88176 0.89246 0.89722 0.90753 0.91687 0.91260 0.89949 0.90964 0.88555 0.87632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.85 9.39 37.16 0.35 -3.50 16 2 C 0.22 6.00 2.44 -27.88 -0.07 5.93 16 3 H 0.05 1.57 7.15 -51.93 -0.37 1.19 16 4 C -0.52 -15.12 8.85 -34.44 -0.30 -15.42 16 5 H 0.07 2.00 7.82 -52.49 -0.41 1.59 16 6 C 0.06 1.79 5.21 -17.82 -0.09 1.70 16 7 N -0.89 -26.05 11.92 55.43 0.66 -25.39 16 8 Si 0.91 21.56 29.54 -169.99 -5.02 16.54 16 9 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 10 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 O -0.35 -8.70 9.86 -39.27 -0.39 -9.09 16 13 C 0.44 9.76 8.00 36.01 0.29 10.05 16 14 O -0.51 -13.13 15.65 -18.75 -0.29 -13.43 16 15 C 0.17 2.81 6.98 -5.19 -0.04 2.77 16 16 N -0.44 -7.66 3.13 -66.50 -0.21 -7.86 16 17 N -0.26 -4.02 12.50 33.24 0.42 -3.61 16 18 C 0.27 3.26 7.10 -153.50 -1.09 2.17 16 19 N -0.56 -7.36 2.76 -117.21 -0.32 -7.68 16 20 C 0.66 11.77 8.68 -87.35 -0.76 11.02 16 21 O -0.55 -11.57 17.75 5.10 0.09 -11.48 16 22 C 0.13 1.15 6.32 -3.59 -0.02 1.13 16 23 C -0.14 -1.09 5.63 -27.67 -0.16 -1.25 16 24 C -0.12 -0.66 5.19 -28.70 -0.15 -0.81 16 25 C -0.12 -0.78 5.57 -27.58 -0.15 -0.93 16 26 C -0.04 -0.23 5.81 -27.36 -0.16 -0.39 16 27 H 0.09 2.38 6.60 -51.93 -0.34 2.04 16 28 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 31 H 0.13 1.97 8.11 -51.93 -0.42 1.55 16 32 H 0.13 1.73 8.14 -51.93 -0.42 1.30 16 33 H 0.10 0.93 8.00 -51.93 -0.42 0.52 16 34 H 0.09 0.48 7.67 -51.93 -0.40 0.08 16 35 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.83 8.06 -51.93 -0.42 0.41 16 37 H 0.06 0.23 7.80 -51.93 -0.41 -0.17 16 38 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.07 0.68 7.89 -51.93 -0.41 0.27 16 41 H 0.10 0.38 7.70 -51.93 -0.40 -0.01 16 42 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 351.70 15.07 5.30 5.30 Total: -1.00 -37.76 351.70 -8.21 -45.97 By element: Atomic # 1 Polarization: 4.35 SS G_CDS: -6.09 Total: -1.74 kcal Atomic # 6 Polarization: 14.81 SS G_CDS: -2.35 Total: 12.46 kcal Atomic # 7 Polarization: -45.09 SS G_CDS: 0.55 Total: -44.54 kcal Atomic # 8 Polarization: -33.40 SS G_CDS: -0.59 Total: -33.99 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -37.76 -8.21 -45.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113689888.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.492 kcal (2) G-P(sol) polarization free energy of solvation -37.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds