Wall clock time and date at job start Fri Apr 10 2020 18:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08995 * 109.47257 * 2 1 4 4 C 1.50701 * 109.47162 * 239.99768 * 2 1 3 5 5 H 1.08010 * 119.99985 * 239.99619 * 4 2 1 6 6 C 1.37872 * 119.99809 * 60.00374 * 4 2 1 7 7 N 1.31510 * 120.00318 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99947 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47073 * 59.99515 * 8 6 4 10 10 H 1.48501 * 109.47464 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.47251 * 300.00052 * 8 6 4 12 12 O 1.45203 * 109.47290 * 120.00146 * 2 1 3 13 13 C 1.34232 * 116.99502 * 269.99931 * 12 2 1 14 14 O 1.20823 * 120.00425 * 359.97438 * 13 12 2 15 15 C 1.50706 * 119.99675 * 179.97438 * 13 12 2 16 16 N 1.46507 * 109.46697 * 180.02562 * 15 13 12 17 17 N 1.40443 * 126.30142 * 270.28428 * 16 15 13 18 18 C 1.28443 * 108.09038 * 180.13212 * 17 16 15 19 19 N 1.38435 * 108.79626 * 359.68383 * 18 17 16 20 20 C 1.33807 * 108.43352 * 0.15275 * 19 18 17 21 21 O 1.21807 * 126.35450 * 180.10149 * 20 19 18 22 22 C 1.47221 * 122.75009 * 180.12834 * 19 18 17 23 23 C 1.53144 * 107.83651 * 67.39408 * 22 19 18 24 24 C 1.51009 * 111.77777 * 276.77793 * 23 22 19 25 25 C 1.51072 * 115.14385 * 70.80868 * 24 23 22 26 26 C 1.51506 * 128.60730 * 179.97438 * 18 17 16 27 27 H 1.09009 * 109.47157 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47459 * 300.00140 * 1 2 3 29 29 H 1.08997 * 109.47035 * 60.00390 * 1 2 3 30 30 H 0.97003 * 120.00057 * 180.02562 * 7 6 4 31 31 H 1.08994 * 109.47225 * 60.00164 * 15 13 12 32 32 H 1.09001 * 109.47346 * 299.99715 * 15 13 12 33 33 H 1.08993 * 109.78725 * 307.81089 * 22 19 18 34 34 H 1.09001 * 109.83410 * 187.00484 * 22 19 18 35 35 H 1.09000 * 109.01511 * 156.18916 * 23 22 19 36 36 H 1.09002 * 108.96021 * 37.33104 * 23 22 19 37 37 H 1.09000 * 108.34685 * 309.33985 * 24 23 22 38 38 H 1.09003 * 108.20804 * 192.17566 * 24 23 22 39 39 H 1.08997 * 109.06756 * 169.07225 * 25 24 23 40 40 H 1.09004 * 109.06584 * 50.14069 * 25 24 23 41 41 H 1.09000 * 109.81485 * 232.27311 * 26 18 17 42 42 H 1.08997 * 109.81078 * 353.10780 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3225 -1.1196 -4.0079 9 1 1.8281 -2.5199 -4.0080 10 1 1.8270 -0.4200 -5.2204 11 1 3.8075 -1.1191 -4.0076 12 8 2.0140 -0.6845 1.1856 13 6 2.2171 0.0641 2.2811 14 8 1.9982 1.2519 2.2503 15 6 2.7183 -0.5772 3.5495 16 7 2.8562 0.4437 4.5912 17 7 4.0000 1.2157 4.8525 18 6 3.7380 1.9956 5.8388 19 7 2.4345 1.7737 6.2490 20 6 1.9040 0.8199 5.4748 21 8 0.7732 0.3737 5.5514 22 6 1.8137 2.5097 7.3626 23 6 1.6601 3.9711 6.9313 24 6 2.9339 4.7543 7.1423 25 6 4.0640 4.4075 6.2016 26 6 4.6385 3.0191 6.4999 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 0.7082 1.1608 -3.4844 31 1 3.6871 -1.0408 3.3640 32 1 2.0088 -1.3368 3.8775 33 1 2.4510 2.4503 8.2448 34 1 0.8345 2.0859 7.5857 35 1 0.8603 4.4305 7.5120 36 1 1.3948 4.0024 5.8746 37 1 3.2743 4.5868 8.1642 38 1 2.7051 5.8139 7.0280 39 1 4.8549 5.1501 6.3062 40 1 3.6928 4.4264 5.1769 41 1 4.6599 2.8517 7.5767 42 1 5.6470 2.9408 6.0939 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113689890.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:11 Heat of formation + Delta-G solvation = -49.598989 kcal Electronic energy + Delta-G solvation = -26101.866906 eV Core-core repulsion = 22277.026158 eV Total energy + Delta-G solvation = -3824.840748 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.152 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.57255 -39.50077 -37.91194 -37.02154 -35.77689 -34.23236 -33.28862 -33.08877 -30.40304 -29.59101 -28.71242 -26.24320 -25.29033 -24.23099 -22.54455 -21.36853 -20.77869 -20.49506 -19.70570 -17.73053 -17.34976 -16.63338 -16.30419 -15.94685 -15.91429 -15.32957 -15.15238 -15.00387 -14.75582 -14.43459 -14.22637 -13.70940 -13.24717 -12.95239 -12.93277 -12.62839 -12.19481 -12.08422 -12.02443 -11.73151 -11.68800 -11.32027 -11.19483 -11.11820 -11.09083 -11.03342 -10.82863 -10.38532 -10.29314 -10.24668 -10.16313 -9.59388 -9.51871 -8.90848 -8.52336 -8.46919 -6.16711 -4.24097 1.65104 1.93401 2.73899 2.89445 2.95636 3.27889 3.30995 3.33745 3.70064 4.13886 4.26515 4.32284 4.34814 4.40647 4.60711 4.84515 4.92977 4.97040 5.07660 5.15971 5.27575 5.27794 5.30176 5.42679 5.57454 5.60163 5.69329 5.71220 5.78868 5.90158 5.95272 6.15738 6.50413 6.66143 6.92268 6.93732 7.16289 7.60435 7.65744 7.74087 7.93898 8.10159 8.14691 8.61012 8.87215 9.41051 10.90686 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.024333 B = 0.003105 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.421797 B = 9014.897085 C = 9179.246090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.217 3.783 3 H 0.046 0.954 4 C -0.522 4.522 5 H 0.069 0.931 6 C 0.062 3.938 7 N -0.889 5.889 8 Si 0.914 3.086 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.274 1.274 12 O -0.354 6.354 13 C 0.436 3.564 14 O -0.509 6.509 15 C 0.168 3.832 16 N -0.441 5.441 17 N -0.262 5.262 18 C 0.272 3.728 19 N -0.559 5.559 20 C 0.660 3.340 21 O -0.554 6.554 22 C 0.132 3.868 23 C -0.142 4.142 24 C -0.121 4.121 25 C -0.122 4.122 26 C -0.036 4.036 27 H 0.038 0.962 28 H 0.015 0.985 29 H 0.100 0.900 30 H 0.267 0.733 31 H 0.133 0.867 32 H 0.132 0.868 33 H 0.089 0.911 34 H 0.100 0.900 35 H 0.084 0.916 36 H 0.074 0.926 37 H 0.064 0.936 38 H 0.069 0.931 39 H 0.082 0.918 40 H 0.072 0.928 41 H 0.096 0.904 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.107 6.041 22.904 24.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.165 3.835 3 H 0.064 0.936 4 C -0.560 4.560 5 H 0.088 0.912 6 C -0.140 4.140 7 N -0.527 5.527 8 Si 0.741 3.259 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.199 1.199 12 O -0.269 6.269 13 C 0.276 3.724 14 O -0.398 6.398 15 C 0.045 3.955 16 N -0.262 5.262 17 N -0.082 5.082 18 C -0.007 4.007 19 N -0.289 5.289 20 C 0.360 3.640 21 O -0.427 6.427 22 C 0.011 3.989 23 C -0.180 4.180 24 C -0.158 4.158 25 C -0.160 4.160 26 C -0.076 4.076 27 H 0.057 0.943 28 H 0.034 0.966 29 H 0.118 0.882 30 H 0.077 0.923 31 H 0.151 0.849 32 H 0.150 0.850 33 H 0.108 0.892 34 H 0.118 0.882 35 H 0.103 0.897 36 H 0.092 0.908 37 H 0.083 0.917 38 H 0.087 0.913 39 H 0.101 0.899 40 H 0.090 0.910 41 H 0.114 0.886 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 6.759 5.808 21.993 23.730 hybrid contribution -0.465 -0.043 -0.579 0.744 sum 6.294 5.765 21.414 23.052 Atomic orbital electron populations 1.22162 0.97485 1.00215 1.01407 1.20657 0.91429 0.93893 0.77497 0.93636 1.20992 1.32632 1.13538 0.88821 0.91234 1.24897 0.94915 0.95099 0.99085 1.69896 1.35967 1.22568 1.24285 0.86304 0.79204 0.79525 0.80912 1.19899 1.21048 1.19947 1.86470 1.75848 1.43485 1.21136 1.23582 0.75710 0.86538 0.86573 1.90618 1.47872 1.16828 1.84451 1.20795 1.05607 0.86892 0.82203 1.48489 1.09783 1.36768 1.31120 1.76611 1.09037 1.07395 1.15147 1.24482 0.85451 0.97304 0.93433 1.46314 1.13264 1.36530 1.32809 1.16334 0.84926 0.81510 0.81230 1.91078 1.15731 1.61825 1.74096 1.21929 0.99694 0.91033 0.86252 1.21680 0.98703 0.94044 1.03620 1.20872 0.94533 1.00577 0.99819 1.21278 0.98504 0.95094 1.01156 1.20544 0.97049 0.89834 1.00124 0.94301 0.96560 0.88209 0.92337 0.84906 0.84988 0.89242 0.88200 0.89738 0.90774 0.91683 0.91259 0.89933 0.90956 0.88551 0.87605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.15 9.33 37.15 0.35 -3.80 16 2 C 0.22 6.09 2.56 -27.89 -0.07 6.02 16 3 H 0.05 1.41 7.16 -51.93 -0.37 1.04 16 4 C -0.52 -15.00 8.90 -34.44 -0.31 -15.31 16 5 H 0.07 1.94 7.81 -52.48 -0.41 1.53 16 6 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -25.86 11.32 55.43 0.63 -25.24 16 8 Si 0.91 21.41 29.54 -169.99 -5.02 16.39 16 9 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 12 O -0.35 -8.74 9.86 -39.26 -0.39 -9.12 16 13 C 0.44 9.78 8.00 36.01 0.29 10.06 16 14 O -0.51 -13.14 15.65 -18.75 -0.29 -13.44 16 15 C 0.17 2.81 6.98 -5.19 -0.04 2.77 16 16 N -0.44 -7.65 3.13 -66.49 -0.21 -7.86 16 17 N -0.26 -4.05 12.50 33.24 0.42 -3.63 16 18 C 0.27 3.28 7.10 -153.50 -1.09 2.19 16 19 N -0.56 -7.31 2.76 -117.20 -0.32 -7.63 16 20 C 0.66 11.66 8.68 -87.36 -0.76 10.90 16 21 O -0.55 -11.41 17.75 5.09 0.09 -11.32 16 22 C 0.13 1.13 6.32 -3.57 -0.02 1.11 16 23 C -0.14 -1.08 5.63 -27.66 -0.16 -1.23 16 24 C -0.12 -0.66 5.19 -28.70 -0.15 -0.81 16 25 C -0.12 -0.79 5.57 -27.60 -0.15 -0.94 16 26 C -0.04 -0.24 5.81 -27.39 -0.16 -0.40 16 27 H 0.04 0.98 8.14 -51.92 -0.42 0.56 16 28 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.10 2.82 6.07 -51.93 -0.32 2.50 16 30 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 31 H 0.13 1.78 8.14 -51.93 -0.42 1.35 16 32 H 0.13 1.93 8.11 -51.93 -0.42 1.51 16 33 H 0.09 0.47 7.67 -51.93 -0.40 0.08 16 34 H 0.10 0.91 8.01 -51.93 -0.42 0.50 16 35 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.81 8.06 -51.93 -0.42 0.40 16 37 H 0.06 0.23 7.80 -51.93 -0.41 -0.17 16 38 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.07 0.69 7.89 -51.93 -0.41 0.28 16 41 H 0.10 0.39 7.70 -51.93 -0.40 -0.01 16 42 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 350.75 15.07 5.29 5.29 Total: -1.00 -37.45 350.75 -8.23 -45.69 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -6.06 Total: -1.34 kcal Atomic # 6 Polarization: 14.58 SS G_CDS: -2.36 Total: 12.21 kcal Atomic # 7 Polarization: -44.87 SS G_CDS: 0.51 Total: -44.36 kcal Atomic # 8 Polarization: -33.29 SS G_CDS: -0.59 Total: -33.88 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -37.45 -8.23 -45.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113689890.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.911 kcal (2) G-P(sol) polarization free energy of solvation -37.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds