Wall clock time and date at job start Fri Apr 10 2020 18:01:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34236 * 116.99575 * 2 1 4 4 O 1.20822 * 120.00233 * 359.97438 * 3 2 1 5 5 C 1.50703 * 119.99448 * 179.97438 * 3 2 1 6 6 N 1.46496 * 109.46745 * 179.97438 * 5 3 2 7 7 C 1.36832 * 120.00362 * 274.56734 * 6 5 3 8 8 H 1.08002 * 120.00458 * 127.26070 * 7 6 5 9 9 C 1.39053 * 119.99896 * 307.26724 * 7 6 5 10 10 N 1.31357 * 119.99982 * 4.44008 * 9 7 6 11 11 Si 1.86808 * 119.99954 * 184.44308 * 9 7 6 12 12 H 1.48500 * 109.47069 * 89.99692 * 11 9 7 13 13 H 1.48506 * 109.46883 * 210.00170 * 11 9 7 14 14 H 1.48504 * 109.47023 * 329.99698 * 11 9 7 15 15 C 1.34778 * 119.99922 * 94.57089 * 6 5 3 16 16 O 1.21681 * 120.00237 * 3.51823 * 15 6 5 17 17 C 1.47029 * 120.00189 * 183.51751 * 15 6 5 18 18 C 1.38521 * 126.89695 * 173.32422 * 17 15 6 19 19 C 1.39642 * 105.34493 * 180.10432 * 18 17 15 20 20 C 1.50705 * 126.05648 * 179.85418 * 19 18 17 21 21 C 1.52993 * 109.47278 * 74.71292 * 20 19 18 22 22 C 1.53001 * 109.46738 * 314.71206 * 20 19 18 23 23 C 1.52999 * 109.46882 * 194.71566 * 20 19 18 24 24 N 1.30877 * 107.88543 * 359.58766 * 19 18 17 25 25 N 1.28438 * 110.94560 * 0.26578 * 24 19 18 26 26 H 0.97007 * 125.19094 * 179.97438 * 25 24 19 27 27 H 1.08999 * 109.47266 * 300.00269 * 1 2 3 28 28 H 1.09001 * 109.47021 * 59.99995 * 1 2 3 29 29 H 1.08996 * 109.46982 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47269 * 59.99757 * 5 3 2 31 31 H 1.09005 * 109.47218 * 299.99447 * 5 3 2 32 32 H 0.97003 * 120.00073 * 180.02562 * 10 9 7 33 33 H 1.08000 * 127.32737 * 359.95240 * 18 17 15 34 34 H 1.09002 * 109.47497 * 300.00173 * 21 20 19 35 35 H 1.09000 * 109.47092 * 60.00389 * 21 20 19 36 36 H 1.09000 * 109.47005 * 179.97438 * 21 20 19 37 37 H 1.09000 * 109.46807 * 180.02562 * 22 20 19 38 38 H 1.08994 * 109.47386 * 300.00042 * 22 20 19 39 39 H 1.09002 * 109.46915 * 60.00514 * 22 20 19 40 40 H 1.09000 * 109.47350 * 299.99526 * 23 20 19 41 41 H 1.09003 * 109.47398 * 60.00010 * 23 20 19 42 42 H 1.09000 * 109.47084 * 179.97438 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 0.0006 6 7 3.9816 2.6798 -0.0002 7 6 4.0856 3.3619 -1.1817 8 1 3.5756 4.3056 -1.3073 9 6 4.8479 2.8401 -2.2211 10 7 5.3965 1.6526 -2.1011 11 14 5.0918 3.8278 -3.7878 12 1 6.3041 4.6751 -3.6551 13 1 5.2587 2.9011 -4.9362 14 1 3.9064 4.6923 -4.0175 15 6 4.2614 3.3004 1.1631 16 8 4.2312 2.6773 2.2078 17 6 4.6030 4.7304 1.1698 18 6 4.7879 5.5361 2.2813 19 6 5.0912 6.8014 1.7743 20 6 5.3768 8.0377 2.5873 21 6 6.7777 7.9369 3.1938 22 6 4.3431 8.1606 3.7087 23 6 5.2992 9.2708 1.6849 24 7 5.0891 6.7220 0.4679 25 7 4.8086 5.5299 0.0808 26 1 4.7511 5.2412 -0.8435 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 3.9565 0.7806 -0.8891 31 1 3.9557 0.7811 0.8909 32 1 5.9286 1.2887 -2.8260 33 1 4.7110 5.2477 3.3192 34 1 6.8330 7.0585 3.8368 35 1 7.5141 7.8494 2.3949 36 1 6.9844 8.8314 3.7815 37 1 4.5494 9.0550 4.2965 38 1 3.3451 8.2324 3.2766 39 1 4.3984 7.2821 4.3516 40 1 6.0355 9.1833 0.8860 41 1 4.3010 9.3426 1.2528 42 1 5.5053 10.1650 2.2730 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120648309.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:15 Heat of formation + Delta-G solvation = -48.660380 kcal Electronic energy + Delta-G solvation = -26448.168564 eV Core-core repulsion = 22623.368517 eV Total energy + Delta-G solvation = -3824.800047 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.152 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.81523 -39.83335 -38.36710 -36.56870 -35.85861 -35.01752 -32.00006 -30.36464 -30.23883 -28.48318 -27.05349 -27.02504 -26.48067 -25.28538 -22.25213 -22.05944 -20.38793 -19.77918 -18.72921 -18.14897 -17.02024 -16.43115 -15.88650 -15.52424 -15.45376 -14.96901 -14.75734 -14.71811 -14.18973 -13.83818 -13.62485 -13.40227 -13.02562 -12.86658 -12.72575 -12.60062 -12.07304 -11.96916 -11.89228 -11.58200 -11.54129 -11.44232 -11.30893 -11.00410 -10.86323 -10.76606 -10.75370 -10.63855 -10.29580 -9.96815 -9.81452 -9.48585 -9.04012 -8.40989 -8.31093 -7.82581 -6.79878 -4.78233 2.17988 2.88368 2.96993 2.98339 3.00294 3.18664 3.27873 3.73798 3.79881 4.22741 4.43103 4.63139 4.91674 5.07286 5.25369 5.40488 5.46888 5.49460 5.56361 5.73644 5.79481 5.80903 5.85980 5.94085 6.00463 6.07690 6.10325 6.14852 6.25233 6.26720 6.36999 6.54710 6.55174 6.63981 6.67818 6.94383 6.98789 7.18896 7.51697 7.82239 7.92814 8.49884 8.55981 8.82061 9.03759 9.44953 10.19678 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.013365 B = 0.004984 C = 0.004027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.483719 B = 5616.126166 C = 6951.643804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.368 6.368 3 C 0.446 3.554 4 O -0.506 6.506 5 C 0.118 3.882 6 N -0.423 5.423 7 C -0.366 4.366 8 H 0.090 0.910 9 C 0.060 3.940 10 N -0.847 5.847 11 Si 0.908 3.092 12 H -0.265 1.265 13 H -0.271 1.271 14 H -0.261 1.261 15 C 0.565 3.435 16 O -0.577 6.577 17 C 0.014 3.986 18 C -0.185 4.185 19 C 0.021 3.979 20 C 0.021 3.979 21 C -0.136 4.136 22 C -0.137 4.137 23 C -0.132 4.132 24 N -0.296 5.296 25 N -0.356 5.356 26 H 0.451 0.549 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.093 0.907 30 H 0.151 0.849 31 H 0.105 0.895 32 H 0.282 0.718 33 H 0.150 0.850 34 H 0.058 0.942 35 H 0.055 0.945 36 H 0.056 0.944 37 H 0.056 0.944 38 H 0.055 0.945 39 H 0.059 0.941 40 H 0.060 0.940 41 H 0.054 0.946 42 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.184 4.676 3.203 5.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.285 6.285 3 C 0.288 3.712 4 O -0.392 6.392 5 C -0.007 4.007 6 N -0.143 5.143 7 C -0.494 4.494 8 H 0.107 0.893 9 C -0.151 4.151 10 N -0.480 5.480 11 Si 0.731 3.269 12 H -0.190 1.190 13 H -0.196 1.196 14 H -0.185 1.185 15 C 0.354 3.646 16 O -0.459 6.459 17 C -0.116 4.116 18 C -0.215 4.215 19 C -0.136 4.136 20 C 0.019 3.981 21 C -0.194 4.194 22 C -0.195 4.195 23 C -0.190 4.190 24 N -0.130 5.130 25 N -0.082 5.082 26 H 0.311 0.689 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.111 0.889 30 H 0.168 0.832 31 H 0.123 0.877 32 H 0.093 0.907 33 H 0.168 0.832 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.074 0.926 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.156 5.087 2.590 5.824 hybrid contribution -0.442 -0.377 -0.773 0.967 sum -1.598 4.710 1.817 5.295 Atomic orbital electron populations 1.23094 0.78057 1.02658 1.01986 1.86551 1.22230 1.34769 1.84913 1.25282 0.93543 0.80875 0.71527 1.90584 1.67056 1.36423 1.45131 1.21253 0.84305 0.87641 1.07550 1.42697 1.57530 1.08927 1.05100 1.19285 1.31563 1.06606 0.91977 0.89326 1.25754 0.93559 0.95981 0.99808 1.69538 1.29500 1.15066 1.33943 0.86202 0.79934 0.80101 0.80636 1.18990 1.19583 1.18469 1.17372 0.78588 0.84555 0.84107 1.90686 1.57181 1.65754 1.32292 1.21621 1.08786 0.93362 0.87877 1.21735 1.09126 0.92157 0.98468 1.21598 1.06673 0.95371 0.89915 1.18778 0.95620 0.90318 0.93409 1.21849 0.95374 1.01554 1.00580 1.21853 0.98539 1.01591 0.97469 1.21738 1.02461 0.95636 0.99127 1.72943 1.20277 1.04606 1.15137 1.45372 1.47576 1.04365 1.10896 0.68948 0.92538 0.92476 0.88857 0.83204 0.87737 0.90733 0.83218 0.92296 0.92613 0.92537 0.92507 0.92560 0.92173 0.92104 0.92641 0.93063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.53 10.56 101.05 1.07 1.60 16 2 O -0.37 -6.94 10.57 -39.27 -0.41 -7.35 16 3 C 0.45 9.90 8.00 36.01 0.29 10.19 16 4 O -0.51 -12.47 16.10 -18.75 -0.30 -12.77 16 5 C 0.12 2.68 5.72 -5.19 -0.03 2.65 16 6 N -0.42 -10.36 1.98 -117.46 -0.23 -10.59 16 7 C -0.37 -8.73 6.53 -15.02 -0.10 -8.83 16 8 H 0.09 2.11 6.04 -52.49 -0.32 1.79 16 9 C 0.06 1.37 5.40 -17.45 -0.09 1.27 16 10 N -0.85 -19.94 11.17 55.50 0.62 -19.32 16 11 Si 0.91 17.62 29.50 -169.99 -5.02 12.60 16 12 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 13 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 14 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 15 C 0.57 14.11 7.62 -12.70 -0.10 14.01 16 16 O -0.58 -15.18 16.42 5.21 0.09 -15.09 16 17 C 0.01 0.32 6.85 -82.06 -0.56 -0.24 16 18 C -0.19 -3.74 10.14 -38.95 -0.39 -4.13 16 19 C 0.02 0.39 5.64 -82.47 -0.47 -0.07 16 20 C 0.02 0.29 0.96 -155.66 -0.15 0.14 16 21 C -0.14 -1.70 8.46 37.15 0.31 -1.39 16 22 C -0.14 -1.69 8.21 37.16 0.30 -1.39 16 23 C -0.13 -1.72 8.04 37.16 0.30 -1.42 16 24 N -0.30 -5.91 11.47 33.63 0.39 -5.52 16 25 N -0.36 -7.64 6.26 33.48 0.21 -7.43 16 26 H 0.45 9.58 5.11 -190.45 -0.97 8.61 16 27 H 0.06 0.82 8.13 -51.93 -0.42 0.40 16 28 H 0.06 0.83 8.13 -51.93 -0.42 0.40 16 29 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.15 3.46 5.68 -51.93 -0.29 3.17 16 31 H 0.10 2.32 7.25 -51.93 -0.38 1.95 16 32 H 0.28 6.20 8.31 -40.82 -0.34 5.86 16 33 H 0.15 2.80 7.80 -52.49 -0.41 2.39 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.06 0.74 7.60 -51.93 -0.39 0.35 16 40 H 0.06 0.84 8.08 -51.93 -0.42 0.42 16 41 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 42 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 354.19 15.07 5.34 5.34 Total: -1.00 -28.82 354.19 -5.49 -34.31 By element: Atomic # 1 Polarization: 19.99 SS G_CDS: -6.55 Total: 13.45 kcal Atomic # 6 Polarization: 12.00 SS G_CDS: 0.38 Total: 12.38 kcal Atomic # 7 Polarization: -43.85 SS G_CDS: 0.98 Total: -42.86 kcal Atomic # 8 Polarization: -34.58 SS G_CDS: -0.63 Total: -35.21 kcal Atomic # 14 Polarization: 17.62 SS G_CDS: -5.02 Total: 12.60 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -28.82 -5.49 -34.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120648309.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.349 kcal (2) G-P(sol) polarization free energy of solvation -28.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds